Wall clock time and date at job start Thu Apr 9 2020 12:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38665 * 120.41778 * 2 1 4 4 C 1.38628 * 118.42115 * 180.23289 * 3 2 1 5 5 C 1.38224 * 119.15884 * 359.47787 * 4 3 2 6 6 N 1.31852 * 120.76471 * 0.53441 * 5 4 3 7 7 C 1.31882 * 121.72425 * 359.74046 * 6 5 4 8 8 C 1.50704 * 119.61843 * 180.02562 * 7 6 5 9 9 H 1.08995 * 109.47479 * 164.26299 * 8 7 6 10 10 C 1.52999 * 109.46982 * 284.26639 * 8 7 6 11 11 N 1.46901 * 109.47074 * 44.26399 * 8 7 6 12 12 C 1.46903 * 111.00117 * 155.00302 * 11 8 7 13 13 H 1.08994 * 109.46995 * 34.99633 * 12 11 8 14 14 C 1.52999 * 109.46758 * 274.99905 * 12 11 8 15 15 C 1.52994 * 109.47113 * 155.00132 * 12 11 8 16 16 C 1.50701 * 109.47318 * 294.99732 * 15 12 11 17 17 H 1.08003 * 119.99425 * 0.02562 * 16 15 12 18 18 C 1.37875 * 120.00010 * 180.02562 * 16 15 12 19 19 N 1.31511 * 120.00393 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99723 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47128 * 90.00398 * 20 18 16 22 22 H 1.48501 * 109.47164 * 210.00267 * 20 18 16 23 23 H 1.48496 * 109.47446 * 330.00226 * 20 18 16 24 24 H 1.08998 * 109.47118 * 95.74220 * 1 2 3 25 25 H 1.09004 * 109.47224 * 215.74017 * 1 2 3 26 26 H 1.08999 * 109.47357 * 335.73801 * 1 2 3 27 27 H 1.08003 * 120.79094 * 359.95139 * 3 2 1 28 28 H 1.08000 * 120.42215 * 179.74873 * 4 3 2 29 29 H 1.08001 * 119.61923 * 180.27421 * 5 4 3 30 30 H 1.08999 * 109.47201 * 180.02562 * 10 8 7 31 31 H 1.08998 * 109.47237 * 299.99498 * 10 8 7 32 32 H 1.09001 * 109.47342 * 59.99985 * 10 8 7 33 33 H 1.00901 * 111.00291 * 278.95855 * 11 8 7 34 34 H 1.09000 * 109.47744 * 299.99927 * 14 12 11 35 35 H 1.08999 * 109.47278 * 60.00053 * 14 12 11 36 36 H 1.09001 * 109.47317 * 179.97438 * 14 12 11 37 37 H 1.09008 * 109.47325 * 54.99930 * 15 12 11 38 38 H 1.09000 * 109.46798 * 174.99847 * 15 12 11 39 39 H 0.96996 * 120.00220 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5945 1.1475 -0.0050 5 6 4.2255 -0.0823 0.0013 6 7 3.5255 -1.1996 0.0013 7 6 2.2067 -1.1916 0.0004 8 6 1.4539 -2.4972 0.0011 9 1 0.4154 -2.3177 0.2790 10 6 1.5081 -3.1177 -1.3964 11 7 2.0680 -3.4160 0.9689 12 6 1.0952 -4.4102 1.4414 13 1 0.4182 -4.6711 0.6280 14 6 0.2926 -3.8252 2.6052 15 6 1.8350 -5.6642 1.9114 16 6 2.5262 -6.3093 0.7379 17 1 2.4461 -5.8685 -0.2449 18 6 3.2606 -7.4620 0.9188 19 7 3.3577 -7.9989 2.1154 20 14 4.1168 -8.2619 -0.5360 21 1 5.4872 -7.7060 -0.6708 22 1 4.1969 -9.7286 -0.3180 23 1 3.3470 -7.9871 -1.7758 24 1 -0.3633 -0.1028 -1.0225 25 1 -0.3634 -0.8342 0.6003 26 1 -0.3634 0.9369 0.4223 27 1 1.6889 2.1423 -0.0008 28 1 4.1735 2.0592 -0.0092 29 1 5.3046 -0.1285 0.0020 30 1 0.9633 -4.0618 -1.3961 31 1 1.0524 -2.4360 -2.1145 32 1 2.5467 -3.2972 -1.6743 33 1 2.8816 -3.8648 0.5755 34 1 0.9696 -3.5642 3.4187 35 1 -0.2344 -2.9318 2.2704 36 1 -0.4295 -4.5627 2.9556 37 1 2.5753 -5.3892 2.6629 38 1 1.1218 -6.3661 2.3438 39 1 3.8741 -8.8100 2.2426 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660607339.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:23 Heat of formation + Delta-G solvation = 15.928180 kcal Electronic energy + Delta-G solvation = -18254.041345 eV Core-core repulsion = 15581.740696 eV Total energy + Delta-G solvation = -2672.300649 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.26314 -37.00661 -33.86416 -33.32824 -32.13232 -30.42703 -27.46389 -27.34300 -27.15754 -24.21946 -22.98722 -22.01253 -20.45328 -19.36452 -16.73692 -16.28289 -16.18207 -15.09710 -14.78704 -14.44837 -14.37768 -13.71327 -13.53427 -12.99068 -12.78024 -12.74215 -12.54626 -12.42427 -11.95500 -11.72895 -11.61769 -11.43881 -11.21493 -10.93038 -10.65187 -10.50250 -10.40749 -10.16900 -9.57927 -9.27367 -9.05774 -9.00666 -8.62520 -8.33573 -7.52116 -5.97016 -3.99358 1.26156 1.44547 3.34472 3.40758 3.43115 3.95632 4.48528 4.53939 4.67602 4.86230 4.97318 5.07069 5.24075 5.40677 5.42332 5.46498 5.60942 5.63201 5.68952 5.77810 5.98260 5.99531 6.04402 6.17600 6.24581 6.27126 6.31819 6.41775 6.56393 6.59591 6.88349 6.98701 7.00458 7.59651 7.70301 8.02723 8.11240 8.32834 8.39913 8.45983 9.06550 9.64534 11.14058 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.025760 B = 0.005865 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.698675 B = 4772.679568 C = 5243.815155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.141 4.141 3 C -0.080 4.080 4 C -0.185 4.185 5 C 0.094 3.906 6 N -0.458 5.458 7 C 0.160 3.840 8 C 0.126 3.874 9 H 0.089 0.911 10 C -0.173 4.173 11 N -0.668 5.668 12 C 0.086 3.914 13 H 0.030 0.970 14 C -0.135 4.135 15 C 0.021 3.979 16 C -0.520 4.520 17 H 0.053 0.947 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.888 3.112 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.275 1.275 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.151 0.849 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.364 0.636 34 H 0.054 0.946 35 H 0.034 0.966 36 H 0.048 0.952 37 H 0.025 0.975 38 H 0.021 0.979 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.438 17.316 -4.918 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.143 4.143 3 C -0.106 4.106 4 C -0.205 4.205 5 C -0.063 4.063 6 N -0.166 5.166 7 C 0.021 3.979 8 C 0.015 3.985 9 H 0.107 0.893 10 C -0.233 4.233 11 N -0.302 5.302 12 C -0.023 4.023 13 H 0.048 0.952 14 C -0.193 4.193 15 C -0.016 4.016 16 C -0.558 4.558 17 H 0.071 0.929 18 C -0.141 4.141 19 N -0.531 5.531 20 Si 0.716 3.284 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.200 1.200 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.168 0.832 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.186 0.814 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.044 0.956 38 H 0.039 0.961 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.998 16.750 -4.273 17.743 hybrid contribution 0.170 -0.139 -1.528 1.544 sum -3.828 16.612 -5.801 18.007 Atomic orbital electron populations 1.20791 0.90663 1.02955 1.02455 1.20683 0.97365 0.93660 1.02595 1.21366 0.94182 0.97660 0.97424 1.22045 0.95217 0.99465 1.03779 1.22770 1.00283 0.87738 0.95554 1.67515 1.07836 1.30821 1.10397 1.21237 0.89645 0.94318 0.92702 1.20521 0.96641 0.89380 0.91967 0.89340 1.22432 1.03000 1.01012 0.96811 1.60555 1.09574 1.21438 1.38631 1.21643 0.93136 0.92553 0.94984 0.95180 1.21820 0.99160 0.99000 0.99360 1.19265 0.95350 0.90122 0.96876 1.21180 1.30894 1.09209 0.94559 0.92877 1.24971 0.96461 0.97161 0.95480 1.69960 1.41074 1.20816 1.21277 0.86657 0.80163 0.78524 0.83028 1.20602 1.21334 1.20036 0.91123 0.90628 0.91700 0.85428 0.85395 0.83176 0.91482 0.93286 0.91771 0.81361 0.92702 0.94726 0.93311 0.95635 0.96102 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.41 36.01 0.34 -0.81 16 2 C -0.14 -1.85 5.90 -104.48 -0.62 -2.46 16 3 C -0.08 -0.92 9.84 -39.28 -0.39 -1.30 16 4 C -0.19 -2.10 10.11 -39.44 -0.40 -2.50 16 5 C 0.09 1.29 11.18 -17.55 -0.20 1.09 16 6 N -0.46 -7.78 10.05 -9.47 -0.10 -7.87 16 7 C 0.16 2.56 5.73 -82.59 -0.47 2.08 16 8 C 0.13 2.10 2.48 -68.86 -0.17 1.93 16 9 H 0.09 1.35 4.58 -51.93 -0.24 1.11 16 10 C -0.17 -2.79 9.13 37.16 0.34 -2.45 16 11 N -0.67 -13.43 5.86 -100.96 -0.59 -14.02 16 12 C 0.09 1.80 2.40 -67.71 -0.16 1.64 16 13 H 0.03 0.63 7.11 -51.93 -0.37 0.26 16 14 C -0.14 -2.46 9.40 37.16 0.35 -2.11 16 15 C 0.02 0.55 4.57 -27.89 -0.13 0.42 16 16 C -0.52 -14.41 8.12 -34.44 -0.28 -14.69 16 17 H 0.05 1.43 7.49 -52.48 -0.39 1.04 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 20 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.08 0.82 6.21 -51.93 -0.32 0.50 16 26 H 0.06 0.55 8.06 -51.93 -0.42 0.13 16 27 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 28 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.15 1.69 8.06 -52.49 -0.42 1.26 16 30 H 0.07 1.13 7.43 -51.93 -0.39 0.75 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 1.12 8.13 -51.93 -0.42 0.70 16 33 H 0.36 8.21 6.95 -39.29 -0.27 7.94 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.03 0.55 7.43 -51.93 -0.39 0.16 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.03 0.72 8.14 -51.92 -0.42 0.29 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 318.50 15.07 4.80 4.80 Total: -1.00 -30.86 318.50 -8.20 -39.06 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -6.15 Total: 4.90 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -1.88 Total: -17.53 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.05 Total: -48.00 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.86 -8.20 -39.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660607339.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.986 kcal (2) G-P(sol) polarization free energy of solvation -30.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds