Wall clock time and date at job start Thu Apr 9 2020 12:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41381 * 126.80151 * 2 1 4 4 C 1.35451 * 103.98592 * 180.02562 * 3 2 1 5 5 C 1.50694 * 126.77831 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.46988 * 89.99973 * 5 4 3 7 7 O 1.21293 * 120.00320 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00000 * 180.02562 * 6 5 4 9 9 C 1.37099 * 119.99970 * 180.02562 * 8 6 5 10 10 H 1.07995 * 120.00240 * 17.71776 * 9 8 6 11 11 C 1.38949 * 119.99842 * 197.72659 * 9 8 6 12 12 N 1.31413 * 120.00110 * 20.88072 * 11 9 8 13 13 Si 1.86796 * 119.99953 * 200.88955 * 11 9 8 14 14 H 1.48502 * 109.47306 * 89.99530 * 13 11 9 15 15 H 1.48500 * 109.47317 * 209.99539 * 13 11 9 16 16 H 1.48499 * 109.47063 * 329.99517 * 13 11 9 17 17 C 1.46498 * 120.00054 * 359.72170 * 8 6 5 18 18 C 1.47199 * 109.47094 * 84.30487 * 17 8 6 19 19 N 7.04863 * 133.90626 * 356.83926 * 2 1 3 20 20 O 1.34048 * 106.44750 * 0.23597 * 4 3 2 21 21 N 1.20927 * 111.56320 * 359.56887 * 20 4 3 22 22 H 1.09003 * 109.47098 * 90.00599 * 1 2 3 23 23 H 1.09000 * 109.47260 * 210.00433 * 1 2 3 24 24 H 1.08999 * 109.47300 * 330.01008 * 1 2 3 25 25 H 1.07998 * 128.00770 * 0.02601 * 3 2 1 26 26 H 1.09000 * 109.47378 * 330.00017 * 5 4 3 27 27 H 1.09000 * 109.47431 * 209.99356 * 5 4 3 28 28 H 0.96998 * 119.99855 * 179.97438 * 12 11 9 29 29 H 1.08999 * 109.47316 * 204.30852 * 17 8 6 30 30 H 1.09008 * 109.46954 * 324.30930 * 17 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6068 -0.0006 5 6 4.9021 1.3695 -0.0014 6 6 5.3361 1.6240 1.4192 7 8 4.6571 1.2248 2.3415 8 7 6.4788 2.2951 1.6648 9 6 6.8739 2.5261 2.9571 10 1 6.4497 1.9461 3.7634 11 6 7.8199 3.5067 3.2297 12 7 8.0354 4.4708 2.3631 13 14 8.7857 3.4543 4.8277 14 1 10.0265 2.6625 4.6306 15 1 9.1406 4.8368 5.2373 16 1 7.9578 2.8217 5.8859 17 6 7.3021 2.7720 0.5508 18 6 6.7894 4.0697 0.0821 19 7 6.3951 5.0706 -0.2800 20 8 3.4538 -0.7254 -0.0062 21 7 2.2868 -1.0424 -0.0005 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3634 0.8901 0.5137 25 1 2.0709 2.1743 0.0004 26 1 4.7648 2.3209 -0.5153 27 1 5.6657 0.7858 -0.5154 28 1 8.6955 5.1555 2.5535 29 1 8.3333 2.8878 0.8846 30 1 7.2632 2.0499 -0.2649 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611113473.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:18 Heat of formation + Delta-G solvation = 63.139212 kcal Electronic energy + Delta-G solvation = -17643.118383 eV Core-core repulsion = 14635.772858 eV Total energy + Delta-G solvation = -3007.345525 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.56399 -38.97524 -35.94142 -34.55668 -34.44698 -32.97617 -31.87823 -28.51168 -28.35200 -27.44078 -24.68957 -22.77645 -20.54466 -19.11702 -18.03409 -17.41497 -16.79851 -16.48714 -16.19080 -14.77785 -14.57158 -14.34853 -13.93519 -13.31296 -13.23711 -13.09815 -12.84628 -12.81572 -12.33760 -12.17280 -11.75908 -11.66982 -11.38856 -11.21715 -10.82522 -10.64233 -10.45116 -10.38861 -9.72819 -9.35318 -9.19374 -8.66729 -8.14797 -6.58823 -4.08879 1.78661 2.51375 3.04677 3.18601 3.22129 3.32291 3.50826 3.67523 3.88068 4.05830 4.42757 4.63207 4.74552 4.81940 5.08790 5.26811 5.31379 5.45959 5.51116 5.52033 5.65521 5.76260 5.92255 5.98780 6.09705 6.35630 6.42519 7.39991 7.77702 8.18095 8.56471 8.63483 8.89913 9.08489 9.59897 10.47254 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.031171 B = 0.006017 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.063998 B = 4652.420974 C = 5137.282596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.013 3.987 3 C -0.229 4.229 4 C 0.016 3.984 5 C -0.063 4.063 6 C 0.456 3.544 7 O -0.563 6.563 8 N -0.438 5.438 9 C -0.314 4.314 10 H 0.110 0.890 11 C 0.033 3.967 12 N -0.877 5.877 13 Si 0.929 3.071 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.269 1.269 17 C 0.217 3.783 18 C 0.244 3.756 19 N -0.470 5.470 20 O 0.099 5.901 21 N -0.373 5.373 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.167 0.833 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.274 0.726 29 H 0.131 0.869 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.745 -5.417 -6.716 9.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.145 4.145 3 C -0.251 4.251 4 C -0.048 4.048 5 C -0.105 4.105 6 C 0.244 3.756 7 O -0.445 6.445 8 N -0.159 5.159 9 C -0.440 4.440 10 H 0.127 0.873 11 C -0.171 4.171 12 N -0.515 5.515 13 Si 0.756 3.244 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.193 1.193 17 C 0.090 3.910 18 C -0.075 4.075 19 N -0.149 5.149 20 O 0.034 5.966 21 N -0.079 5.079 22 H 0.095 0.905 23 H 0.092 0.908 24 H 0.098 0.902 25 H 0.184 0.816 26 H 0.130 0.870 27 H 0.127 0.873 28 H 0.085 0.915 29 H 0.148 0.852 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.758 -5.297 -6.767 9.823 hybrid contribution 0.718 0.883 0.969 1.495 sum -4.040 -4.414 -5.797 8.331 Atomic orbital electron populations 1.20108 0.86338 1.03583 1.02879 1.23475 0.98741 0.89055 1.03271 1.22286 0.91231 1.00922 1.10671 1.23714 0.97442 0.83399 1.00225 1.20248 0.91540 0.99667 0.99005 1.19718 0.81837 0.84947 0.89131 1.90606 1.53396 1.54794 1.45691 1.43587 1.18071 1.48279 1.05948 1.19751 1.22027 1.18588 0.83665 0.87253 1.25291 0.98501 0.93634 0.99645 1.69845 1.33445 1.10957 1.37297 0.85861 0.79753 0.77500 0.81307 1.20023 1.21065 1.19299 1.18816 0.98373 0.84858 0.88986 1.29268 0.92536 0.94978 0.90700 1.80880 1.10008 1.11465 1.12591 1.84759 1.21449 1.22814 1.67535 1.73762 0.89408 1.24202 1.20542 0.90518 0.90817 0.90195 0.81570 0.86966 0.87281 0.91494 0.85166 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.47 36.01 0.38 -0.42 16 2 C 0.01 0.21 7.33 -82.10 -0.60 -0.39 16 3 C -0.23 -3.71 11.06 -39.38 -0.44 -4.15 16 4 C 0.02 0.28 5.98 -35.31 -0.21 0.07 16 5 C -0.06 -1.01 4.87 -29.04 -0.14 -1.15 16 6 C 0.46 9.80 7.56 -10.98 -0.08 9.72 16 7 O -0.56 -14.51 15.68 5.55 0.09 -14.43 16 8 N -0.44 -9.62 2.60 -117.93 -0.31 -9.92 16 9 C -0.31 -7.76 9.32 -14.93 -0.14 -7.90 16 10 H 0.11 2.90 7.38 -52.49 -0.39 2.51 16 11 C 0.03 0.79 4.88 -17.47 -0.09 0.70 16 12 N -0.88 -21.19 9.47 55.50 0.53 -20.67 16 13 Si 0.93 19.07 29.60 -169.99 -5.03 14.04 16 14 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 15 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 17 C 0.22 3.92 4.91 -6.83 -0.03 3.89 16 18 C 0.24 4.97 12.95 -20.79 -0.27 4.70 16 19 N -0.47 -10.45 18.53 42.12 0.78 -9.67 16 20 O 0.10 1.79 11.20 17.15 0.19 1.99 16 21 N -0.37 -6.63 12.07 33.43 0.40 -6.23 16 22 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.17 2.37 8.06 -52.49 -0.42 1.95 16 26 H 0.11 1.63 7.51 -51.93 -0.39 1.24 16 27 H 0.11 1.34 7.41 -51.93 -0.38 0.95 16 28 H 0.27 6.45 8.31 -40.82 -0.34 6.12 16 29 H 0.13 2.43 6.45 -51.93 -0.34 2.10 16 30 H 0.09 1.11 6.68 -51.92 -0.35 0.76 16 LS Contribution 276.04 15.07 4.16 4.16 Total: -1.00 -31.39 276.04 -3.48 -34.87 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -2.67 Total: 0.80 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -1.62 Total: 5.06 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 1.40 Total: -46.49 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.28 Total: -12.44 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.39 -3.48 -34.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611113473.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.012 kcal (2) G-P(sol) polarization free energy of solvation -31.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds