Wall clock time and date at job start Thu Apr 9 2020 12:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21294 * 119.99949 * 2 1 4 4 N 1.34774 * 120.00475 * 180.02562 * 2 1 3 5 5 C 1.40124 * 120.00520 * 185.53500 * 4 2 1 6 6 C 1.38719 * 120.08650 * 24.79773 * 5 4 2 7 7 C 1.38200 * 119.98453 * 180.02562 * 6 5 4 8 8 C 1.38274 * 120.16286 * 359.97438 * 7 6 5 9 9 C 1.38246 * 120.17768 * 0.02639 * 8 7 6 10 10 C 1.38544 * 120.01772 * 359.97438 * 9 8 7 11 11 O 1.35976 * 120.08430 * 180.02562 * 10 9 8 12 12 C 1.42898 * 116.99955 * 359.94973 * 11 10 9 13 13 C 1.53002 * 109.46950 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.46764 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00647 * 0.02562 * 14 13 12 16 16 C 1.37888 * 119.99789 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99910 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99804 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47338 * 89.99885 * 18 16 14 20 20 H 1.48506 * 109.46633 * 209.99782 * 18 16 14 21 21 H 1.48501 * 109.46982 * 329.99453 * 18 16 14 22 22 H 1.09000 * 109.46608 * 239.99783 * 1 2 3 23 23 H 1.09001 * 109.46969 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46674 * 120.00020 * 1 2 3 25 25 H 0.97003 * 119.99771 * 5.53044 * 4 2 1 26 26 H 1.08004 * 120.01067 * 0.02562 * 6 5 4 27 27 H 1.07998 * 119.92061 * 180.02562 * 7 6 5 28 28 H 1.07994 * 119.91157 * 179.74388 * 8 7 6 29 29 H 1.08006 * 119.99075 * 180.02562 * 9 8 7 30 30 H 1.08997 * 109.47001 * 300.00050 * 12 11 10 31 31 H 1.09001 * 109.47101 * 60.00276 * 12 11 10 32 32 H 1.08997 * 109.47220 * 299.99807 * 13 12 11 33 33 H 1.09001 * 109.47082 * 60.00155 * 13 12 11 34 34 H 0.96998 * 120.00139 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.5773 -1.1700 0.1165 6 6 4.2261 -0.1076 0.7287 7 6 5.6034 -0.1124 0.8425 8 6 6.3377 -1.1745 0.3479 9 6 5.6981 -2.2368 -0.2634 10 6 4.3177 -2.2396 -0.3816 11 8 3.6872 -3.2840 -0.9822 12 6 4.5105 -4.3452 -1.4701 13 6 3.6301 -5.4212 -2.1089 14 6 4.4984 -6.5406 -2.6228 15 1 5.5708 -6.4899 -2.5052 16 6 3.9237 -7.6296 -3.2433 17 7 2.6178 -7.6916 -3.3861 18 14 4.9999 -9.0175 -3.8797 19 1 5.1796 -10.0339 -2.8122 20 1 4.3508 -9.6466 -5.0580 21 1 6.3246 -8.4752 -4.2751 22 1 -0.3632 -0.5139 0.8900 23 1 -0.3633 1.0277 0.0005 24 1 -0.3633 -0.5139 -0.8900 25 1 1.6994 -2.0052 -0.0819 26 1 3.6550 0.7231 1.1163 27 1 6.1073 0.7150 1.3197 28 1 7.4141 -1.1721 0.4353 29 1 6.2746 -3.0650 -0.6484 30 1 5.2038 -3.9541 -2.2147 31 1 5.0723 -4.7789 -0.6428 32 1 2.9366 -5.8123 -1.3646 33 1 3.0686 -4.9872 -2.9362 34 1 2.2134 -8.4575 -3.8229 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019518607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:42 Heat of formation + Delta-G solvation = -59.287922 kcal Electronic energy + Delta-G solvation = -17413.945389 eV Core-core repulsion = 14504.831368 eV Total energy + Delta-G solvation = -2909.114021 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.59952 -39.05949 -36.98356 -34.68449 -33.40762 -30.96557 -30.54129 -29.46476 -28.16425 -25.17582 -23.09807 -22.01076 -21.00390 -20.11794 -18.25387 -17.08278 -16.90554 -16.14208 -15.70291 -15.25098 -14.96643 -14.70690 -14.47497 -14.16523 -13.48855 -13.05490 -12.88588 -12.70258 -12.36883 -12.28660 -11.68741 -11.58302 -11.42344 -10.92643 -10.91891 -10.62711 -10.44494 -9.89223 -9.72853 -9.71911 -9.35557 -8.49861 -8.38574 -7.54559 -6.15601 -4.20173 1.39553 1.64319 2.60220 3.11954 3.24287 3.30578 3.33253 3.71912 4.00842 4.36833 4.66477 5.08159 5.13140 5.13779 5.21287 5.22798 5.37744 5.56309 5.63470 5.78764 5.91390 5.98131 6.04016 6.32547 6.40111 6.55253 6.65100 6.71891 7.01712 7.41817 7.47002 7.56778 7.74199 7.94241 8.13047 8.18303 8.85195 9.44570 10.95956 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.027114 B = 0.004744 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.429677 B = 5900.231955 C = 6869.956441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.509 3.491 3 O -0.537 6.537 4 N -0.659 5.659 5 C 0.105 3.895 6 C -0.098 4.098 7 C -0.151 4.151 8 C -0.097 4.097 9 C -0.194 4.194 10 C 0.117 3.883 11 O -0.320 6.320 12 C 0.067 3.933 13 C 0.026 3.974 14 C -0.527 4.527 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.899 3.101 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 H 0.091 0.909 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.418 0.582 26 H 0.147 0.853 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.134 0.866 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.301 12.586 8.220 15.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.298 3.702 3 O -0.414 6.414 4 N -0.303 5.303 5 C 0.010 3.990 6 C -0.118 4.118 7 C -0.170 4.170 8 C -0.116 4.116 9 C -0.213 4.213 10 C 0.069 3.931 11 O -0.234 6.234 12 C -0.007 4.007 13 C -0.011 4.011 14 C -0.565 4.565 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.528 5.528 18 Si 0.726 3.274 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 H 0.109 0.891 23 H 0.113 0.887 24 H 0.111 0.889 25 H 0.255 0.745 26 H 0.164 0.836 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.152 0.848 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.309 13.176 8.106 15.473 hybrid contribution 0.559 -1.414 -0.509 1.604 sum 0.250 11.762 7.597 14.004 Atomic orbital electron populations 1.21921 0.90864 1.05662 1.04804 1.20960 0.90884 0.83058 0.75345 1.90664 1.70471 1.31489 1.48801 1.43439 1.05252 1.10218 1.71426 1.17146 0.82653 0.95841 1.03311 1.21182 0.94758 0.97891 0.97946 1.20871 0.93457 0.99212 1.03428 1.20919 0.99661 0.93349 0.97680 1.21187 0.92896 1.01493 1.05772 1.18878 0.91046 0.88984 0.94239 1.86077 1.37795 1.28642 1.70849 1.23338 0.94801 0.85625 0.96907 1.19119 0.95236 0.90613 0.96099 1.20968 0.93304 1.03551 1.38724 0.92340 1.24982 0.95076 0.98349 0.95698 1.69966 1.09481 1.30466 1.42878 0.86484 0.80438 0.81941 0.78519 1.20468 1.21029 1.19733 0.89058 0.88750 0.88908 0.74537 0.83597 0.86026 0.86056 0.84818 0.93062 0.93043 0.95455 0.95450 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.32 36.01 0.37 -1.06 16 2 C 0.51 6.68 7.75 -10.98 -0.09 6.59 16 3 O -0.54 -8.81 14.26 5.55 0.08 -8.73 16 4 N -0.66 -9.21 5.29 -9.75 -0.05 -9.26 16 5 C 0.10 1.70 6.45 -83.50 -0.54 1.16 16 6 C -0.10 -1.48 8.72 -39.42 -0.34 -1.83 16 7 C -0.15 -2.03 10.04 -39.58 -0.40 -2.43 16 8 C -0.10 -1.32 10.04 -39.57 -0.40 -1.72 16 9 C -0.19 -3.05 9.04 -39.47 -0.36 -3.41 16 10 C 0.12 2.03 6.70 -39.08 -0.26 1.77 16 11 O -0.32 -6.19 9.55 -19.67 -0.19 -6.38 16 12 C 0.07 1.39 4.68 37.16 0.17 1.56 16 13 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 14 C -0.53 -14.36 9.11 -34.44 -0.31 -14.67 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 18 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.09 0.73 8.12 -51.93 -0.42 0.30 16 24 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.42 5.24 8.35 -40.82 -0.34 4.90 16 26 H 0.15 2.23 5.79 -52.48 -0.30 1.92 16 27 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 28 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.13 2.02 6.30 -52.48 -0.33 1.69 16 30 H 0.05 1.02 7.67 -51.93 -0.40 0.63 16 31 H 0.05 1.01 7.66 -51.93 -0.40 0.61 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 295.50 15.07 4.45 4.45 Total: -1.00 -31.55 295.50 -6.66 -38.21 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -4.27 Total: 2.88 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -2.39 Total: -11.91 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.68 Total: -34.40 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.11 Total: -15.11 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.55 -6.66 -38.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019518607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.081 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds