Wall clock time and date at job start Thu Apr 9 2020 12:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46903 * 110.99924 * 2 1 4 4 C 1.50695 * 109.46665 * 66.05341 * 3 2 1 5 5 H 1.08000 * 120.00346 * 359.97438 * 4 3 2 6 6 C 1.37886 * 119.99741 * 179.97438 * 4 3 2 7 7 N 1.31509 * 119.99752 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99680 * 179.97438 * 6 4 3 9 9 H 1.48494 * 109.47416 * 60.00062 * 8 6 4 10 10 H 1.48503 * 109.46904 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47223 * 299.99800 * 8 6 4 12 12 C 1.46902 * 110.99639 * 236.05293 * 2 1 3 13 13 C 1.50698 * 109.47046 * 293.95123 * 12 2 1 14 14 C 1.38395 * 119.92643 * 270.25179 * 13 12 2 15 15 C 1.38342 * 120.30516 * 180.29977 * 14 13 12 16 16 C 1.37974 * 120.14875 * 359.44610 * 15 14 13 17 17 C 1.39608 * 119.84372 * 0.27850 * 16 15 14 18 18 C 1.47731 * 120.14574 * 179.97438 * 17 16 15 19 19 O 1.21470 * 119.99879 * 179.97438 * 18 17 16 20 20 O 1.34713 * 119.99818 * 359.97438 * 18 17 16 21 21 C 1.37925 * 119.92591 * 90.00108 * 13 12 2 22 22 H 1.08996 * 109.46523 * 183.95271 * 1 2 3 23 23 H 1.09002 * 109.46495 * 303.94566 * 1 2 3 24 24 H 1.09000 * 109.47363 * 63.94867 * 1 2 3 25 25 H 1.09001 * 109.47185 * 186.04990 * 3 2 1 26 26 H 1.08993 * 109.47233 * 306.05356 * 3 2 1 27 27 H 0.97002 * 119.99327 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.46890 * 173.95109 * 12 2 1 29 29 H 1.08997 * 109.47613 * 53.94959 * 12 2 1 30 30 H 1.08000 * 119.84625 * 0.02862 * 14 13 12 31 31 H 1.08002 * 119.92904 * 179.72812 * 15 14 13 32 32 H 1.07999 * 120.07593 * 180.25535 * 16 15 14 33 33 H 0.96703 * 116.99394 * 179.97438 * 20 18 17 34 34 H 1.07997 * 120.07375 * 0.02562 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6371 2.0470 1.2985 5 1 1.0742 1.5113 2.0486 6 6 2.0278 3.3491 1.5290 7 7 2.7137 4.0011 0.6159 8 14 1.5829 4.1866 3.1384 9 1 2.1737 3.4290 4.2707 10 1 2.1151 5.5730 3.1385 11 1 0.1056 4.2241 3.2851 12 6 1.9954 -0.7659 -1.1377 13 6 1.6369 -2.2203 -0.9731 14 6 2.4936 -3.0701 -0.2954 15 6 2.1752 -4.4080 -0.1451 16 6 0.9944 -4.9015 -0.6607 17 6 0.1230 -4.0486 -1.3405 18 6 -1.1428 -4.5700 -1.8958 19 8 -1.8993 -3.8254 -2.4864 20 8 -1.4580 -5.8713 -1.7472 21 6 0.4533 -2.7004 -1.4936 22 1 -0.3632 -1.0252 0.0708 23 1 -0.3632 0.5739 0.8526 24 1 -0.3634 0.4513 -0.9232 25 1 3.0798 1.3445 -0.1083 26 1 1.5611 1.9274 -0.8308 27 1 2.9889 4.9170 0.7783 28 1 3.0797 -0.6610 -1.1758 29 1 1.5610 -0.3871 -2.0629 30 1 3.4169 -2.6880 0.1141 31 1 2.8502 -5.0667 0.3811 32 1 0.7451 -5.9453 -0.5391 33 1 -2.2970 -6.1659 -2.1273 34 1 -0.2160 -2.0354 -2.0191 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021520607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:53 Heat of formation + Delta-G solvation = -64.450251 kcal Electronic energy + Delta-G solvation = -17437.013435 eV Core-core repulsion = 14527.675558 eV Total energy + Delta-G solvation = -2909.337876 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.48945 -38.96235 -36.36615 -36.20217 -32.80407 -31.53323 -31.11026 -27.22666 -26.73520 -24.75485 -23.85888 -21.75580 -21.09285 -20.13984 -18.02486 -17.27394 -16.30333 -15.96277 -15.73149 -15.27356 -14.92703 -14.45675 -14.25561 -13.70395 -13.48920 -13.37254 -12.51464 -12.44113 -11.93478 -11.72858 -11.69726 -11.38844 -11.18058 -11.01828 -10.86748 -10.70292 -10.61279 -10.43501 -9.87969 -9.27141 -9.01024 -8.76846 -8.43745 -7.29230 -6.03768 -4.05150 0.69943 1.36298 2.50964 2.88702 3.33604 3.37426 3.40565 3.77306 4.42715 4.75332 4.88116 4.95872 5.12009 5.21416 5.32537 5.35808 5.45389 5.72621 5.87587 5.98084 6.11634 6.19714 6.22861 6.31268 6.33605 6.39455 6.68593 6.76726 6.86960 7.24287 7.31309 7.76111 7.77311 8.04097 8.15832 8.51113 9.02024 9.59017 11.07106 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.035572 B = 0.004439 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.949306 B = 6306.037512 C = 6564.355119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.534 5.534 3 C 0.192 3.808 4 C -0.508 4.508 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.087 3.913 13 C -0.072 4.072 14 C -0.059 4.059 15 C -0.137 4.137 16 C -0.070 4.070 17 C -0.136 4.136 18 C 0.528 3.472 19 O -0.515 6.515 20 O -0.514 6.514 21 C -0.048 4.048 22 H 0.046 0.954 23 H 0.075 0.925 24 H 0.012 0.988 25 H 0.031 0.969 26 H -0.008 1.008 27 H 0.262 0.738 28 H 0.081 0.919 29 H 0.036 0.964 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.412 0.588 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.047 -18.348 -4.093 19.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.259 5.259 3 C 0.068 3.932 4 C -0.547 4.547 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.041 4.041 13 C -0.073 4.073 14 C -0.078 4.078 15 C -0.155 4.155 16 C -0.089 4.089 17 C -0.138 4.138 18 C 0.373 3.627 19 O -0.405 6.405 20 O -0.326 6.326 21 C -0.066 4.066 22 H 0.065 0.935 23 H 0.094 0.906 24 H 0.031 0.969 25 H 0.049 0.951 26 H 0.010 0.990 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.151 0.849 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.270 0.730 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.630 -18.032 -3.690 18.592 hybrid contribution -1.080 0.770 -0.145 1.334 sum -3.709 -17.262 -3.834 18.067 Atomic orbital electron populations 1.22296 0.88783 0.99743 1.00688 1.62188 1.07161 1.17773 1.38748 1.19762 0.95417 0.81258 0.96802 1.21114 1.34941 0.96951 1.01666 0.91880 1.24983 0.95265 0.97301 0.97005 1.69947 1.38262 1.11545 1.34111 0.86550 0.78727 0.78324 0.83750 1.20144 1.21346 1.20279 1.21085 1.00775 0.88580 0.93660 1.19973 0.93742 0.96596 0.96991 1.21418 0.99363 0.92746 0.94279 1.21144 0.97224 0.95833 1.01257 1.21355 0.93181 0.99529 0.94799 1.18940 0.93806 0.94815 1.06192 1.21008 0.86097 0.79454 0.76155 1.90894 1.51166 1.58318 1.40087 1.84562 1.45114 1.27717 1.75226 1.21210 0.95834 0.93162 0.96440 0.93499 0.90601 0.96911 0.95095 0.98983 0.92845 0.90028 0.94640 0.84949 0.85263 0.84907 0.73003 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 8.95 60.07 0.54 1.21 16 2 N -0.53 -11.45 4.74 -245.83 -1.17 -12.62 16 3 C 0.19 4.97 4.72 -4.98 -0.02 4.94 16 4 C -0.51 -14.22 8.46 -34.44 -0.29 -14.52 16 5 H 0.06 1.75 7.12 -52.49 -0.37 1.38 16 6 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 8 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.09 1.53 5.11 -4.98 -0.03 1.50 16 13 C -0.07 -1.09 4.88 -104.68 -0.51 -1.60 16 14 C -0.06 -0.78 9.69 -39.49 -0.38 -1.16 16 15 C -0.14 -1.50 10.03 -39.64 -0.40 -1.90 16 16 C -0.07 -0.79 9.62 -39.17 -0.38 -1.16 16 17 C -0.14 -1.80 5.87 -104.98 -0.62 -2.42 16 18 C 0.53 6.76 8.27 34.61 0.29 7.05 16 19 O -0.52 -8.11 17.13 -19.24 -0.33 -8.44 16 20 O -0.51 -4.65 12.68 -40.53 -0.51 -5.16 16 21 C -0.05 -0.70 7.50 -39.17 -0.29 -1.00 16 22 H 0.05 0.85 6.16 -51.93 -0.32 0.53 16 23 H 0.08 1.63 6.76 -51.93 -0.35 1.28 16 24 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 25 H 0.03 0.84 7.93 -51.93 -0.41 0.43 16 26 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 28 H 0.08 1.38 7.88 -51.93 -0.41 0.97 16 29 H 0.04 0.62 8.06 -51.93 -0.42 0.20 16 30 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.13 1.20 7.61 -52.49 -0.40 0.80 16 33 H 0.41 1.82 9.11 45.56 0.42 2.24 16 34 H 0.13 2.06 7.62 -52.49 -0.40 1.66 16 LS Contribution 296.22 15.07 4.46 4.46 Total: -1.00 -32.34 296.22 -7.52 -39.85 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -3.49 Total: -1.25 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -2.19 Total: -7.58 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: -0.43 Total: -38.48 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.84 Total: -13.60 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.34 -7.52 -39.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021520607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.597 kcal (2) G-P(sol) polarization free energy of solvation -32.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds