Wall clock time and date at job start Thu Apr 9 2020 12:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46903 * 110.99924 * 2 1 4 4 C 1.50695 * 109.46665 * 66.05341 * 3 2 1 5 5 H 1.08000 * 120.00346 * 359.97438 * 4 3 2 6 6 C 1.37886 * 119.99741 * 179.97438 * 4 3 2 7 7 N 1.31509 * 119.99752 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99680 * 179.97438 * 6 4 3 9 9 H 1.48494 * 109.47416 * 60.00062 * 8 6 4 10 10 H 1.48503 * 109.46904 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47223 * 299.99800 * 8 6 4 12 12 C 1.46902 * 110.99639 * 236.05293 * 2 1 3 13 13 C 1.50698 * 109.47046 * 293.95123 * 12 2 1 14 14 C 1.38395 * 119.92643 * 270.25179 * 13 12 2 15 15 C 1.38342 * 120.30516 * 180.29977 * 14 13 12 16 16 C 1.37974 * 120.14875 * 359.44610 * 15 14 13 17 17 C 1.39608 * 119.84372 * 0.27850 * 16 15 14 18 18 C 1.47731 * 120.14574 * 179.97438 * 17 16 15 19 19 O 1.21470 * 119.99879 * 179.97438 * 18 17 16 20 20 O 1.34713 * 119.99818 * 359.97438 * 18 17 16 21 21 C 1.37925 * 119.92591 * 90.00108 * 13 12 2 22 22 H 1.08996 * 109.46523 * 183.95271 * 1 2 3 23 23 H 1.09002 * 109.46495 * 303.94566 * 1 2 3 24 24 H 1.09000 * 109.47363 * 63.94867 * 1 2 3 25 25 H 1.09001 * 109.47185 * 186.04990 * 3 2 1 26 26 H 1.08993 * 109.47233 * 306.05356 * 3 2 1 27 27 H 0.97002 * 119.99327 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.46890 * 173.95109 * 12 2 1 29 29 H 1.08997 * 109.47613 * 53.94959 * 12 2 1 30 30 H 1.08000 * 119.84625 * 0.02862 * 14 13 12 31 31 H 1.08002 * 119.92904 * 179.72812 * 15 14 13 32 32 H 1.07999 * 120.07593 * 180.25535 * 16 15 14 33 33 H 0.96703 * 116.99394 * 179.97438 * 20 18 17 34 34 H 1.07997 * 120.07375 * 0.02562 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6371 2.0470 1.2985 5 1 1.0742 1.5113 2.0486 6 6 2.0278 3.3491 1.5290 7 7 2.7137 4.0011 0.6159 8 14 1.5829 4.1866 3.1384 9 1 2.1737 3.4290 4.2707 10 1 2.1151 5.5730 3.1385 11 1 0.1056 4.2241 3.2851 12 6 1.9954 -0.7659 -1.1377 13 6 1.6369 -2.2203 -0.9731 14 6 2.4936 -3.0701 -0.2954 15 6 2.1752 -4.4080 -0.1451 16 6 0.9944 -4.9015 -0.6607 17 6 0.1230 -4.0486 -1.3405 18 6 -1.1428 -4.5700 -1.8958 19 8 -1.8993 -3.8254 -2.4864 20 8 -1.4580 -5.8713 -1.7472 21 6 0.4533 -2.7004 -1.4936 22 1 -0.3632 -1.0252 0.0708 23 1 -0.3632 0.5739 0.8526 24 1 -0.3634 0.4513 -0.9232 25 1 3.0798 1.3445 -0.1083 26 1 1.5611 1.9274 -0.8308 27 1 2.9889 4.9170 0.7783 28 1 3.0797 -0.6610 -1.1758 29 1 1.5610 -0.3871 -2.0629 30 1 3.4169 -2.6880 0.1141 31 1 2.8502 -5.0667 0.3811 32 1 0.7451 -5.9453 -0.5391 33 1 -2.2970 -6.1659 -2.1273 34 1 -0.2160 -2.0354 -2.0191 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021520607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:53 Heat of formation + Delta-G solvation = -86.658700 kcal Electronic energy + Delta-G solvation = -17437.976465 eV Core-core repulsion = 14527.675558 eV Total energy + Delta-G solvation = -2910.300907 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.46889 -40.04926 -37.95913 -37.10508 -34.80004 -32.82036 -32.18182 -29.19436 -28.23008 -25.77734 -25.60609 -22.98501 -22.40587 -21.51013 -18.98876 -18.58428 -18.10822 -16.95347 -16.85513 -16.67689 -16.45485 -15.99260 -15.62158 -15.31935 -14.82399 -14.36266 -13.99898 -13.71518 -13.56368 -13.31443 -12.84576 -12.78695 -12.64626 -12.57715 -12.46562 -12.41643 -12.08370 -11.82953 -11.65209 -11.30040 -10.61556 -10.01267 -9.84668 -9.07142 -8.20418 -6.30543 -0.29946 0.34682 1.41963 1.44924 1.52097 1.53276 2.03436 2.40726 2.74562 3.12310 3.45702 3.74380 3.88827 4.06298 4.12578 4.29095 4.37781 4.46693 4.60279 4.68791 4.72829 4.89055 4.99435 5.02943 5.16363 5.23160 5.28319 5.42892 5.53901 5.61406 5.64404 5.88823 6.02688 6.26274 6.56779 6.84515 6.95214 7.38987 8.90483 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.035572 B = 0.004439 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.949306 B = 6306.037512 C = 6564.355119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.538 5.538 3 C 0.206 3.794 4 C -0.525 4.525 5 H 0.062 0.938 6 C 0.003 3.997 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.270 1.270 12 C 0.089 3.911 13 C -0.090 4.090 14 C -0.065 4.065 15 C -0.125 4.125 16 C -0.055 4.055 17 C -0.148 4.148 18 C 0.535 3.465 19 O -0.554 6.554 20 O -0.499 6.499 21 C -0.061 4.061 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.008 0.992 25 H 0.011 0.989 26 H -0.038 1.038 27 H 0.265 0.735 28 H 0.083 0.917 29 H 0.030 0.970 30 H 0.139 0.861 31 H 0.167 0.833 32 H 0.164 0.836 33 H 0.433 0.567 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.155 -20.758 -2.696 21.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.262 5.262 3 C 0.080 3.920 4 C -0.564 4.564 5 H 0.081 0.919 6 C -0.195 4.195 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.191 1.191 10 H -0.208 1.208 11 H -0.195 1.195 12 C -0.038 4.038 13 C -0.090 4.090 14 C -0.083 4.083 15 C -0.142 4.142 16 C -0.073 4.073 17 C -0.149 4.149 18 C 0.381 3.619 19 O -0.446 6.446 20 O -0.312 6.312 21 C -0.080 4.080 22 H 0.087 0.913 23 H 0.078 0.922 24 H 0.027 0.973 25 H 0.029 0.971 26 H -0.020 1.020 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.048 0.952 30 H 0.157 0.843 31 H 0.184 0.816 32 H 0.181 0.819 33 H 0.295 0.705 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.753 -20.496 -2.297 20.808 hybrid contribution -1.045 1.363 -0.631 1.830 sum -3.799 -19.134 -2.928 19.726 Atomic orbital electron populations 1.22215 0.88049 1.00751 0.99691 1.62097 1.07835 1.15302 1.40985 1.19429 0.94036 0.83413 0.95097 1.21425 1.35025 0.97588 1.02331 0.91938 1.25896 0.94950 0.97965 1.00678 1.70074 1.39217 1.11959 1.36204 0.85441 0.78729 0.77221 0.79259 1.19143 1.20785 1.19469 1.21077 1.00663 0.90117 0.91987 1.19693 0.94939 0.95074 0.99304 1.21601 0.99222 0.93703 0.93777 1.21520 0.97440 0.95091 1.00179 1.21721 0.92305 1.00534 0.92746 1.19072 0.94661 0.94446 1.06751 1.20934 0.85536 0.80178 0.75265 1.90887 1.52304 1.59552 1.41887 1.84498 1.46602 1.25382 1.74768 1.21081 0.95660 0.94118 0.97156 0.91274 0.92242 0.97301 0.97060 1.02028 0.92634 0.89840 0.95221 0.84279 0.81575 0.81879 0.70459 0.86586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.70 8.95 127.69 1.14 2.85 16 2 N -0.54 -23.69 4.74 -931.66 -4.42 -28.11 16 3 C 0.21 11.09 4.72 85.55 0.40 11.50 16 4 C -0.53 -30.01 8.46 25.60 0.22 -29.79 16 5 H 0.06 3.50 7.12 -2.91 -0.02 3.48 16 6 C 0.00 0.19 5.46 84.66 0.46 0.65 16 7 N -0.93 -56.36 13.29 21.45 0.28 -56.08 16 8 Si 0.97 44.39 29.54 68.60 2.03 46.42 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 C 0.09 3.22 5.11 85.56 0.44 3.66 16 13 C -0.09 -2.67 4.88 -19.90 -0.10 -2.77 16 14 C -0.06 -1.56 9.69 22.33 0.22 -1.35 16 15 C -0.12 -2.26 10.03 22.23 0.22 -2.04 16 16 C -0.05 -1.02 9.62 22.54 0.22 -0.81 16 17 C -0.15 -3.65 5.87 -20.10 -0.12 -3.76 16 18 C 0.53 12.79 8.27 70.33 0.58 13.37 16 19 O -0.55 -17.24 17.13 19.93 0.34 -16.90 16 20 O -0.50 -7.43 12.68 -56.23 -0.71 -8.14 16 21 C -0.06 -1.79 7.50 22.54 0.17 -1.62 16 22 H 0.07 2.52 6.16 -2.39 -0.01 2.51 16 23 H 0.06 2.61 6.76 -2.39 -0.02 2.59 16 24 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.01 0.64 7.93 -2.39 -0.02 0.62 16 26 H -0.04 -2.23 8.12 -2.39 -0.02 -2.25 16 27 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 28 H 0.08 2.92 7.88 -2.39 -0.02 2.90 16 29 H 0.03 1.09 8.06 -2.39 -0.02 1.07 16 30 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 31 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 32 H 0.16 2.08 7.61 -2.91 -0.02 2.06 16 33 H 0.43 2.50 9.11 -74.05 -0.67 1.83 16 34 H 0.12 3.73 7.62 -2.91 -0.02 3.71 16 Total: -1.00 -70.89 296.22 1.81 -69.08 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: 0.44 Total: 3.85 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 3.86 Total: -10.11 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -4.14 Total: -84.19 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.37 Total: -25.04 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -70.89 1.81 -69.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021520607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.583 kcal (2) G-P(sol) polarization free energy of solvation -70.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds