Wall clock time and date at job start Thu Apr 9 2020 12:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 115.56069 * 2 1 4 4 C 1.53005 * 117.49870 * 145.68625 * 2 1 3 5 5 C 1.52995 * 117.49850 * 214.30805 * 2 1 3 6 6 H 1.08995 * 117.50186 * 0.02641 * 5 2 1 7 7 C 1.50706 * 117.49613 * 145.02136 * 5 2 1 8 8 O 1.21288 * 119.99937 * 0.02562 * 7 5 2 9 9 N 1.34776 * 119.99634 * 180.02562 * 7 5 2 10 10 C 1.40160 * 120.00074 * 180.02562 * 9 7 5 11 11 C 1.40415 * 125.96939 * 359.97438 * 10 9 7 12 12 C 1.35236 * 107.86600 * 180.02562 * 11 10 9 13 13 N 1.34971 * 107.86496 * 0.02562 * 12 11 10 14 14 C 1.46491 * 125.97907 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.46957 * 124.99763 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 N 1.31214 * 125.97783 * 180.36598 * 10 9 7 24 24 H 1.09002 * 109.46882 * 205.69177 * 1 2 3 25 25 H 1.09000 * 109.47091 * 325.69288 * 1 2 3 26 26 H 1.09002 * 109.46926 * 85.68920 * 1 2 3 27 27 H 1.09000 * 117.49527 * 359.97438 * 4 2 1 28 28 H 1.08999 * 117.49678 * 214.97992 * 4 2 1 29 29 H 0.97000 * 120.00741 * 359.97438 * 9 7 5 30 30 H 1.07994 * 126.06438 * 0.02562 * 11 10 9 31 31 H 1.08001 * 126.07102 * 180.02562 * 12 11 10 32 32 H 1.09004 * 109.47166 * 5.00029 * 14 13 12 33 33 H 1.08994 * 109.47507 * 244.99735 * 14 13 12 34 34 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9834 0.0000 4 6 2.2365 -1.1210 0.7651 5 6 2.2364 -1.1210 -0.7649 6 1 1.6113 -1.8582 -1.2685 7 6 3.5293 -0.7811 -1.4608 8 8 3.9720 0.3465 -1.4008 9 7 4.1935 -1.7301 -2.1497 10 6 5.3962 -1.4143 -2.7964 11 6 6.0199 -0.1563 -2.8094 12 6 7.1536 -0.2629 -3.5389 13 7 7.2480 -1.5372 -3.9737 14 6 8.3253 -2.0870 -4.8001 15 6 8.9223 -3.2882 -4.1132 16 1 8.5373 -3.6101 -3.1568 17 6 9.9558 -3.9800 -4.7086 18 7 10.4243 -3.5882 -5.8733 19 14 10.6905 -5.4735 -3.8607 20 1 9.9911 -5.7048 -2.5713 21 1 10.5300 -6.6659 -4.7313 22 1 12.1344 -5.2376 -3.6057 23 7 6.1323 -2.2404 -3.5016 24 1 -0.3633 -0.9261 0.4455 25 1 -0.3633 0.8489 0.5792 26 1 -0.3633 0.0772 -1.0248 27 1 1.6112 -1.8582 1.2687 28 1 3.1716 -0.8751 1.2683 29 1 3.8396 -2.6320 -2.1974 30 1 5.6584 0.7376 -2.3231 31 1 7.8585 0.5307 -3.7383 32 1 9.0963 -1.3298 -4.9430 33 1 7.9244 -2.3845 -5.7690 34 1 11.1516 -4.0747 -6.2920 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117711218.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:05 Heat of formation + Delta-G solvation = 64.362956 kcal Electronic energy + Delta-G solvation = -17196.941748 eV Core-core repulsion = 14325.482383 eV Total energy + Delta-G solvation = -2871.459365 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.72603 -39.61328 -36.98459 -34.68951 -33.34133 -31.01159 -29.33560 -29.00375 -26.80206 -24.68758 -22.80814 -21.51210 -20.74281 -19.91734 -19.47517 -17.29241 -16.61976 -16.52172 -15.42879 -15.20218 -14.85040 -14.36169 -14.10785 -13.71480 -13.52163 -13.09132 -12.72255 -12.35218 -12.27064 -12.22330 -11.77265 -11.65284 -11.05863 -10.87818 -10.59712 -10.41052 -10.31233 -10.25673 -9.98685 -9.55889 -9.48237 -8.64348 -8.12898 -7.46737 -6.25058 -4.30016 2.23893 2.76460 2.89455 3.21924 3.29417 3.36179 3.49981 3.80354 3.87057 4.31499 4.50480 4.52324 4.60908 4.95586 5.07023 5.10230 5.36551 5.47384 5.49215 5.57448 5.72947 5.78848 5.82692 6.07960 6.28676 6.49316 6.62500 6.85876 7.04976 7.42183 7.58349 7.71037 7.88756 8.04450 8.28828 8.63659 8.80054 9.35692 10.83759 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.042471 B = 0.004048 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.114462 B = 6915.310974 C = 7342.423323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 H 0.119 0.881 4 C -0.148 4.148 5 C -0.188 4.188 6 H 0.126 0.874 7 C 0.548 3.452 8 O -0.519 6.519 9 N -0.627 5.627 10 C 0.256 3.744 11 C -0.288 4.288 12 C 0.051 3.949 13 N -0.319 5.319 14 C 0.258 3.742 15 C -0.528 4.528 16 H 0.069 0.931 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.908 3.092 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.282 1.282 23 N -0.304 5.304 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.411 0.589 30 H 0.159 0.841 31 H 0.168 0.832 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.022 5.130 9.756 19.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.139 4.139 3 H 0.137 0.863 4 C -0.186 4.186 5 C -0.209 4.209 6 H 0.144 0.856 7 C 0.334 3.666 8 O -0.394 6.394 9 N -0.274 5.274 10 C 0.003 3.997 11 C -0.319 4.319 12 C -0.099 4.099 13 N -0.101 5.101 14 C 0.140 3.860 15 C -0.566 4.566 16 H 0.087 0.913 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.735 3.265 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.207 1.207 23 N -0.136 5.136 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.123 0.877 28 H 0.119 0.881 29 H 0.247 0.753 30 H 0.177 0.823 31 H 0.185 0.815 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.349 4.658 9.142 18.463 hybrid contribution 0.375 -0.615 0.431 0.840 sum -14.974 4.042 9.574 18.227 Atomic orbital electron populations 1.21409 0.92215 1.02201 1.02264 1.22400 0.95183 0.95165 1.01158 0.86311 1.23141 1.03274 1.01476 0.90672 1.22223 0.97185 1.05628 0.95859 0.85624 1.19632 0.84527 0.84352 0.78065 1.90628 1.67629 1.20917 1.60208 1.42411 1.20602 1.14050 1.50315 1.19136 0.88838 0.93528 0.98203 1.21519 0.98800 0.98867 1.12740 1.22566 0.99183 0.89116 0.99014 1.49086 1.17022 1.05813 1.38138 1.19754 0.81088 0.95696 0.89445 1.21302 1.17254 1.11624 1.06456 0.91253 1.24953 0.96293 0.97960 0.94920 1.69930 1.27010 1.40575 1.15845 0.86269 0.78716 0.81868 0.79629 1.19559 1.20681 1.20746 1.77329 0.98418 1.19240 1.18573 0.92340 0.91659 0.91873 0.87673 0.88061 0.75336 0.82338 0.81459 0.92502 0.93707 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.19 37.16 0.38 -0.45 16 2 C -0.12 -1.09 5.92 -90.62 -0.54 -1.63 16 3 H 0.12 1.26 7.67 -51.93 -0.40 0.87 16 4 C -0.15 -1.27 9.88 -26.73 -0.26 -1.53 16 5 C -0.19 -1.89 5.91 -91.77 -0.54 -2.43 16 6 H 0.13 0.98 8.14 -51.93 -0.42 0.55 16 7 C 0.55 8.06 7.58 -10.98 -0.08 7.97 16 8 O -0.52 -9.24 13.39 5.55 0.07 -9.16 16 9 N -0.63 -9.96 5.45 -11.13 -0.06 -10.02 16 10 C 0.26 5.26 8.11 -154.39 -1.25 4.00 16 11 C -0.29 -5.84 9.61 -39.83 -0.38 -6.22 16 12 C 0.05 1.04 11.44 -17.24 -0.20 0.85 16 13 N -0.32 -7.52 3.66 -62.57 -0.23 -7.75 16 14 C 0.26 6.60 6.26 -5.20 -0.03 6.57 16 15 C -0.53 -14.78 9.24 -34.44 -0.32 -15.10 16 16 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.90 -25.41 13.29 55.43 0.74 -24.68 16 19 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 N -0.30 -7.13 12.43 31.44 0.39 -6.74 16 24 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.10 0.67 8.05 -51.93 -0.42 0.25 16 28 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.41 5.33 8.82 -40.82 -0.36 4.97 16 30 H 0.16 3.12 5.91 -52.49 -0.31 2.81 16 31 H 0.17 2.77 8.06 -52.49 -0.42 2.35 16 32 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 LS Contribution 299.97 15.07 4.52 4.52 Total: -1.00 -32.33 299.97 -7.31 -39.64 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -4.40 Total: 4.17 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -3.33 Total: -6.37 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.84 Total: -49.18 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.07 Total: -9.16 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.33 -7.31 -39.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117711218.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.005 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds