Wall clock time and date at job start Thu Apr 9 2020 12:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 115.56069 * 2 1 4 4 C 1.53005 * 117.49870 * 145.68625 * 2 1 3 5 5 C 1.52995 * 117.49850 * 214.30805 * 2 1 3 6 6 H 1.08995 * 117.50186 * 0.02641 * 5 2 1 7 7 C 1.50706 * 117.49613 * 145.02136 * 5 2 1 8 8 O 1.21288 * 119.99937 * 0.02562 * 7 5 2 9 9 N 1.34776 * 119.99634 * 180.02562 * 7 5 2 10 10 C 1.40160 * 120.00074 * 180.02562 * 9 7 5 11 11 C 1.40415 * 125.96939 * 359.97438 * 10 9 7 12 12 C 1.35236 * 107.86600 * 180.02562 * 11 10 9 13 13 N 1.34971 * 107.86496 * 0.02562 * 12 11 10 14 14 C 1.46491 * 125.97907 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.46957 * 124.99763 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 N 1.31214 * 125.97783 * 180.36598 * 10 9 7 24 24 H 1.09002 * 109.46882 * 205.69177 * 1 2 3 25 25 H 1.09000 * 109.47091 * 325.69288 * 1 2 3 26 26 H 1.09002 * 109.46926 * 85.68920 * 1 2 3 27 27 H 1.09000 * 117.49527 * 359.97438 * 4 2 1 28 28 H 1.08999 * 117.49678 * 214.97992 * 4 2 1 29 29 H 0.97000 * 120.00741 * 359.97438 * 9 7 5 30 30 H 1.07994 * 126.06438 * 0.02562 * 11 10 9 31 31 H 1.08001 * 126.07102 * 180.02562 * 12 11 10 32 32 H 1.09004 * 109.47166 * 5.00029 * 14 13 12 33 33 H 1.08994 * 109.47507 * 244.99735 * 14 13 12 34 34 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9834 0.0000 4 6 2.2365 -1.1210 0.7651 5 6 2.2364 -1.1210 -0.7649 6 1 1.6113 -1.8582 -1.2685 7 6 3.5293 -0.7811 -1.4608 8 8 3.9720 0.3465 -1.4008 9 7 4.1935 -1.7301 -2.1497 10 6 5.3962 -1.4143 -2.7964 11 6 6.0199 -0.1563 -2.8094 12 6 7.1536 -0.2629 -3.5389 13 7 7.2480 -1.5372 -3.9737 14 6 8.3253 -2.0870 -4.8001 15 6 8.9223 -3.2882 -4.1132 16 1 8.5373 -3.6101 -3.1568 17 6 9.9558 -3.9800 -4.7086 18 7 10.4243 -3.5882 -5.8733 19 14 10.6905 -5.4735 -3.8607 20 1 9.9911 -5.7048 -2.5713 21 1 10.5300 -6.6659 -4.7313 22 1 12.1344 -5.2376 -3.6057 23 7 6.1323 -2.2404 -3.5016 24 1 -0.3633 -0.9261 0.4455 25 1 -0.3633 0.8489 0.5792 26 1 -0.3633 0.0772 -1.0248 27 1 1.6112 -1.8582 1.2687 28 1 3.1716 -0.8751 1.2683 29 1 3.8396 -2.6320 -2.1974 30 1 5.6584 0.7376 -2.3231 31 1 7.8585 0.5307 -3.7383 32 1 9.0963 -1.3298 -4.9430 33 1 7.9244 -2.3845 -5.7690 34 1 11.1516 -4.0747 -6.2920 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117711218.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:04 Heat of formation + Delta-G solvation = 44.166894 kcal Electronic energy + Delta-G solvation = -17197.817515 eV Core-core repulsion = 14325.482383 eV Total energy + Delta-G solvation = -2872.335132 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.25568 -40.88210 -37.89481 -36.19627 -35.27657 -32.83248 -30.99522 -29.71781 -28.61125 -25.96926 -24.53901 -22.71191 -21.91754 -21.23589 -20.74910 -18.71009 -18.45754 -18.05847 -17.06222 -16.54110 -16.23135 -15.90855 -15.51825 -14.91290 -14.59378 -14.25545 -14.13026 -13.85475 -13.69497 -13.66427 -12.94943 -12.88652 -12.72780 -12.33717 -12.29008 -12.07347 -11.64191 -11.40491 -11.31589 -11.01130 -10.83740 -10.73463 -9.79134 -9.15363 -8.34781 -6.48974 0.88404 1.33449 1.36732 1.37523 1.40130 1.52084 2.14410 2.28279 2.40369 2.86331 2.97087 3.54014 3.76185 3.86912 3.96446 4.20563 4.24885 4.45793 4.72521 4.78939 4.87270 4.89840 4.90774 4.99054 5.00387 5.07086 5.15230 5.26350 5.46921 5.55207 5.77965 5.90017 6.22370 6.28386 6.63083 6.98372 7.10910 7.21195 8.73263 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.042471 B = 0.004048 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.114462 B = 6915.310974 C = 7342.423323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.121 4.121 3 H 0.097 0.903 4 C -0.136 4.136 5 C -0.192 4.192 6 H 0.156 0.844 7 C 0.545 3.455 8 O -0.553 6.553 9 N -0.622 5.622 10 C 0.262 3.738 11 C -0.296 4.296 12 C 0.057 3.943 13 N -0.343 5.343 14 C 0.272 3.728 15 C -0.548 4.548 16 H 0.052 0.948 17 C 0.018 3.982 18 N -0.921 5.921 19 Si 0.973 3.027 20 H -0.274 1.274 21 H -0.272 1.272 22 H -0.269 1.269 23 N -0.346 5.346 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.136 0.864 28 H 0.087 0.913 29 H 0.425 0.575 30 H 0.166 0.834 31 H 0.202 0.798 32 H 0.059 0.941 33 H 0.022 0.978 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.228 4.547 11.118 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 H 0.115 0.885 4 C -0.173 4.173 5 C -0.213 4.213 6 H 0.173 0.827 7 C 0.334 3.666 8 O -0.430 6.430 9 N -0.271 5.271 10 C 0.008 3.992 11 C -0.327 4.327 12 C -0.092 4.092 13 N -0.125 5.125 14 C 0.153 3.847 15 C -0.586 4.586 16 H 0.070 0.930 17 C -0.182 4.182 18 N -0.559 5.559 19 Si 0.797 3.203 20 H -0.199 1.199 21 H -0.198 1.198 22 H -0.194 1.194 23 N -0.177 5.177 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.154 0.846 28 H 0.106 0.894 29 H 0.263 0.737 30 H 0.183 0.817 31 H 0.219 0.781 32 H 0.077 0.923 33 H 0.040 0.960 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.585 4.076 10.513 20.055 hybrid contribution 0.668 -0.332 0.057 0.748 sum -15.917 3.744 10.570 19.470 Atomic orbital electron populations 1.21417 0.90007 1.03509 1.02693 1.22469 0.96742 0.94060 1.00683 0.88502 1.23273 1.03053 1.01673 0.89282 1.22290 0.95025 1.07285 0.96694 0.82678 1.20567 0.85421 0.83515 0.77085 1.90601 1.68787 1.22346 1.61234 1.42617 1.19206 1.15289 1.49960 1.19527 0.89636 0.93233 0.96818 1.21711 0.98933 0.99108 1.12965 1.23176 0.99642 0.88671 0.97674 1.48860 1.17290 1.06909 1.39473 1.19360 0.81490 0.95195 0.88656 1.21427 1.18045 1.12998 1.06151 0.93004 1.25757 0.96401 1.00581 0.95488 1.70003 1.27402 1.41728 1.16802 0.85274 0.78217 0.78417 0.78343 1.19918 1.19761 1.19447 1.77249 0.99261 1.20626 1.20515 0.90576 0.90933 0.91793 0.84569 0.89420 0.73729 0.81681 0.78095 0.92281 0.96023 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 10.19 71.98 0.73 -0.50 16 2 C -0.12 -1.95 5.92 -10.79 -0.06 -2.01 16 3 H 0.10 2.01 7.67 -2.38 -0.02 1.99 16 4 C -0.14 -1.97 9.88 30.60 0.30 -1.67 16 5 C -0.19 -3.43 5.91 -11.54 -0.07 -3.50 16 6 H 0.16 1.87 8.14 -2.39 -0.02 1.85 16 7 C 0.55 15.54 7.58 87.66 0.66 16.21 16 8 O -0.55 -19.59 13.39 -3.06 -0.04 -19.63 16 9 N -0.62 -19.37 5.45 -307.51 -1.68 -21.04 16 10 C 0.26 10.80 8.11 133.33 1.08 11.88 16 11 C -0.30 -11.98 9.61 22.11 0.21 -11.77 16 12 C 0.06 2.31 11.44 83.52 0.96 3.27 16 13 N -0.34 -16.49 3.66 -351.86 -1.29 -17.78 16 14 C 0.27 14.29 6.26 85.64 0.54 14.83 16 15 C -0.55 -31.26 9.24 25.60 0.24 -31.02 16 16 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 17 C 0.02 1.00 5.46 84.66 0.46 1.47 16 18 N -0.92 -52.40 13.29 21.45 0.28 -52.11 16 19 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 23 N -0.35 -16.46 12.43 -54.45 -0.68 -17.13 16 24 H 0.08 0.54 7.90 -2.39 -0.02 0.53 16 25 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.14 1.17 8.05 -2.39 -0.02 1.15 16 28 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.42 10.60 8.82 -92.71 -0.82 9.78 16 30 H 0.17 6.48 5.91 -2.91 -0.02 6.46 16 31 H 0.20 6.43 8.06 -2.91 -0.02 6.41 16 32 H 0.06 3.03 8.07 -2.38 -0.02 3.01 16 33 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.27 14.46 8.31 -92.70 -0.77 13.69 16 Total: -1.00 -70.37 299.97 3.98 -66.39 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.30 Total: 18.33 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 5.05 Total: -2.83 kcal Atomic # 7 Polarization: -104.71 SS G_CDS: -3.36 Total: -108.07 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.04 Total: -19.63 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -70.37 3.98 -66.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117711218.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.560 kcal (2) G-P(sol) polarization free energy of solvation -70.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds