Wall clock time and date at job start Thu Apr 9 2020 12:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 115.54737 * 2 1 4 4 C 1.53001 * 117.50076 * 214.32886 * 2 1 3 5 5 C 1.52995 * 117.49917 * 145.70562 * 2 1 3 6 6 H 1.09001 * 117.49902 * 0.02562 * 5 2 1 7 7 C 1.50703 * 117.49940 * 214.98140 * 5 2 1 8 8 O 1.21285 * 120.00114 * 0.02562 * 7 5 2 9 9 N 1.34771 * 119.99750 * 180.02562 * 7 5 2 10 10 C 1.40161 * 120.00098 * 179.97438 * 9 7 5 11 11 C 1.40416 * 125.96837 * 359.72150 * 10 9 7 12 12 C 1.35236 * 107.86449 * 179.82582 * 11 10 9 13 13 N 1.34967 * 107.86354 * 0.42686 * 12 11 10 14 14 C 1.46499 * 125.98001 * 179.69370 * 13 12 11 15 15 C 1.50697 * 109.47538 * 125.01795 * 14 13 12 16 16 H 1.08004 * 119.99740 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00097 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00205 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99915 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47127 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47666 * 119.99579 * 19 17 15 22 22 H 1.48503 * 109.46956 * 239.99691 * 19 17 15 23 23 N 1.31216 * 125.97899 * 180.02562 * 10 9 7 24 24 H 1.09001 * 109.47002 * 154.27587 * 1 2 3 25 25 H 1.08993 * 109.46955 * 274.28024 * 1 2 3 26 26 H 1.09000 * 109.47050 * 34.27853 * 1 2 3 27 27 H 1.08998 * 117.49578 * 0.02562 * 4 2 1 28 28 H 1.08997 * 117.49524 * 144.99695 * 4 2 1 29 29 H 0.97003 * 120.00450 * 359.97438 * 9 7 5 30 30 H 1.07997 * 126.06778 * 359.97368 * 11 10 9 31 31 H 1.07995 * 126.06744 * 180.15363 * 12 11 10 32 32 H 1.09003 * 109.46926 * 245.01760 * 14 13 12 33 33 H 1.08997 * 109.46931 * 5.01407 * 14 13 12 34 34 H 0.96999 * 119.99718 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2366 -1.1207 -0.7653 5 6 2.2365 -1.1212 0.7646 6 1 1.6113 -1.8591 1.2674 7 6 3.5293 -0.7815 1.4606 8 8 3.9716 0.3463 1.4018 9 7 4.1940 -1.7310 2.1484 10 6 5.3966 -1.4152 2.7953 11 6 6.0229 -0.1585 2.8045 12 6 7.1540 -0.2640 3.5383 13 7 7.2494 -1.5389 3.9709 14 6 8.3282 -2.0897 4.7949 15 6 7.7428 -2.7256 6.0295 16 1 6.6740 -2.7203 6.1845 17 6 8.5717 -3.3140 6.9609 18 7 9.8732 -3.3208 6.7719 19 14 7.8460 -4.1028 8.4909 20 1 6.3679 -3.9626 8.4664 21 1 8.2065 -5.5430 8.5239 22 1 8.3867 -3.4293 9.6989 23 7 6.1370 -2.2436 3.4935 24 1 -0.3633 -0.9258 -0.4461 25 1 -0.3633 0.0767 1.0247 26 1 -0.3633 0.8492 -0.5788 27 1 1.6113 -1.8578 -1.2692 28 1 3.1714 -0.8746 -1.2688 29 1 3.8401 -2.6329 2.1958 30 1 5.6638 0.7344 2.3147 31 1 7.8583 0.5297 3.7386 32 1 8.8745 -2.8404 4.2238 33 1 9.0080 -1.2890 5.0861 34 1 10.4562 -3.7351 7.4271 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117711221.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:06 Heat of formation + Delta-G solvation = 64.380259 kcal Electronic energy + Delta-G solvation = -17193.252009 eV Core-core repulsion = 14321.793394 eV Total energy + Delta-G solvation = -2871.458615 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.72696 -39.61484 -36.98697 -34.68970 -33.34174 -31.01111 -29.33618 -29.00291 -26.80197 -24.68901 -22.80882 -21.51517 -20.74417 -19.91788 -19.47597 -17.29384 -16.61402 -16.52675 -15.43596 -15.20703 -14.82451 -14.35633 -14.15602 -13.68124 -13.52776 -13.08535 -12.73404 -12.35428 -12.24771 -12.22572 -11.80869 -11.63623 -11.05718 -10.87977 -10.58612 -10.42622 -10.30845 -10.25761 -9.98649 -9.56118 -9.47949 -8.64343 -8.12900 -7.46762 -6.24992 -4.30000 2.23968 2.75126 2.90840 3.22006 3.29479 3.36183 3.49795 3.79988 3.87112 4.31507 4.50294 4.52015 4.60731 4.95773 5.07105 5.10304 5.36576 5.46809 5.49404 5.57306 5.72293 5.79205 5.82619 6.07909 6.28671 6.49286 6.62482 6.85886 7.04906 7.42172 7.58331 7.71123 7.88786 8.04366 8.28830 8.63693 8.80121 9.35777 10.83824 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.042024 B = 0.004027 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.125921 B = 6952.250367 C = 7341.721885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 H 0.119 0.881 4 C -0.148 4.148 5 C -0.188 4.188 6 H 0.126 0.874 7 C 0.548 3.452 8 O -0.519 6.519 9 N -0.627 5.627 10 C 0.256 3.744 11 C -0.288 4.288 12 C 0.051 3.949 13 N -0.319 5.319 14 C 0.258 3.742 15 C -0.528 4.528 16 H 0.069 0.931 17 C 0.062 3.938 18 N -0.895 5.895 19 Si 0.908 3.092 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.282 1.282 23 N -0.304 5.304 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.411 0.589 30 H 0.159 0.841 31 H 0.168 0.832 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.384 4.344 -12.419 19.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.139 4.139 3 H 0.137 0.863 4 C -0.186 4.186 5 C -0.209 4.209 6 H 0.144 0.856 7 C 0.334 3.666 8 O -0.394 6.394 9 N -0.274 5.274 10 C 0.003 3.997 11 C -0.319 4.319 12 C -0.099 4.099 13 N -0.101 5.101 14 C 0.140 3.860 15 C -0.566 4.566 16 H 0.088 0.912 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.735 3.265 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.207 1.207 23 N -0.135 5.135 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.123 0.877 28 H 0.119 0.881 29 H 0.247 0.753 30 H 0.177 0.823 31 H 0.185 0.815 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.667 3.851 -11.876 18.511 hybrid contribution -0.367 -0.252 0.777 0.895 sum -14.034 3.599 -11.100 18.251 Atomic orbital electron populations 1.21410 0.92211 1.02191 1.02296 1.22398 0.95200 0.95164 1.01128 0.86309 1.23136 1.03255 1.01508 0.90675 1.22225 0.97206 1.05641 0.95818 0.85610 1.19627 0.84513 0.84347 0.78084 1.90627 1.67644 1.20878 1.60231 1.42411 1.20562 1.14045 1.50359 1.19137 0.88953 0.93663 0.97959 1.21520 0.98724 0.98902 1.12781 1.22563 0.99543 0.89154 0.98619 1.49087 1.17400 1.06032 1.37543 1.19755 0.81665 0.95649 0.88911 1.21300 0.94454 1.37223 1.03664 0.91245 1.24950 0.94743 0.95731 0.98694 1.69928 1.02723 1.44430 1.36291 0.86270 0.79426 0.78930 0.81866 1.19563 1.20674 1.20748 1.77330 0.98562 1.19551 1.18099 0.92341 0.91851 0.91659 0.87687 0.88089 0.75336 0.82339 0.81461 0.93698 0.92507 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.19 37.16 0.38 -0.46 16 2 C -0.12 -1.09 5.92 -90.62 -0.54 -1.63 16 3 H 0.12 1.26 7.67 -51.93 -0.40 0.87 16 4 C -0.15 -1.24 9.88 -26.73 -0.26 -1.51 16 5 C -0.19 -1.89 5.91 -91.77 -0.54 -2.43 16 6 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 7 C 0.55 8.06 7.58 -10.99 -0.08 7.97 16 8 O -0.52 -9.24 13.39 5.55 0.07 -9.16 16 9 N -0.63 -9.96 5.45 -11.13 -0.06 -10.02 16 10 C 0.26 5.25 8.11 -154.39 -1.25 4.00 16 11 C -0.29 -5.84 9.61 -39.83 -0.38 -6.22 16 12 C 0.05 1.04 11.44 -17.24 -0.20 0.85 16 13 N -0.32 -7.52 3.67 -62.57 -0.23 -7.75 16 14 C 0.26 6.60 6.26 -5.20 -0.03 6.57 16 15 C -0.53 -14.79 9.24 -34.44 -0.32 -15.11 16 16 H 0.07 2.02 7.81 -52.48 -0.41 1.61 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.90 -25.42 13.29 55.43 0.74 -24.68 16 19 Si 0.91 21.42 29.54 -169.99 -5.02 16.40 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 N -0.30 -7.12 12.42 31.44 0.39 -6.73 16 24 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.10 0.65 8.05 -51.93 -0.42 0.23 16 28 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.41 5.33 8.82 -40.82 -0.36 4.97 16 30 H 0.16 3.12 5.92 -52.49 -0.31 2.81 16 31 H 0.17 2.77 8.06 -52.49 -0.42 2.35 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.42 8.07 -51.93 -0.42 1.01 16 34 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 299.97 15.07 4.52 4.52 Total: -1.00 -32.34 299.97 -7.31 -39.65 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -4.40 Total: 4.13 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -3.33 Total: -6.36 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.84 Total: -49.18 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.07 Total: -9.16 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.34 -7.31 -39.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117711221.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.032 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds