Wall clock time and date at job start Thu Apr 9 2020 12:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 115.55950 * 2 1 4 4 C 1.53002 * 117.49855 * 145.68545 * 2 1 3 5 5 C 1.52995 * 117.49733 * 214.30611 * 2 1 3 6 6 H 1.08998 * 117.51744 * 145.02782 * 5 2 1 7 7 C 1.50698 * 117.50058 * 0.02562 * 5 2 1 8 8 O 1.21292 * 120.00277 * 359.97438 * 7 5 2 9 9 N 1.34780 * 120.00045 * 179.97438 * 7 5 2 10 10 C 1.40162 * 120.00035 * 179.97438 * 9 7 5 11 11 C 1.40404 * 125.97093 * 0.02562 * 10 9 7 12 12 C 1.35235 * 107.86890 * 179.97438 * 11 10 9 13 13 N 1.34978 * 107.85839 * 0.02562 * 12 11 10 14 14 C 1.46496 * 125.97492 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47106 * 124.99953 * 14 13 12 16 16 H 1.07999 * 119.99515 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00176 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99883 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47216 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 119.99848 * 19 17 15 22 22 H 1.48501 * 109.47057 * 239.99829 * 19 17 15 23 23 N 1.31214 * 125.97297 * 180.25916 * 10 9 7 24 24 H 1.09005 * 109.47035 * 205.69378 * 1 2 3 25 25 H 1.09004 * 109.46899 * 325.69144 * 1 2 3 26 26 H 1.09000 * 109.47123 * 85.69120 * 1 2 3 27 27 H 1.09001 * 117.49372 * 359.97438 * 4 2 1 28 28 H 1.08998 * 117.49894 * 214.98160 * 4 2 1 29 29 H 0.97000 * 119.99686 * 0.02562 * 9 7 5 30 30 H 1.08001 * 126.06971 * 359.95734 * 11 10 9 31 31 H 1.07994 * 126.07585 * 179.97438 * 12 11 10 32 32 H 1.09001 * 109.47001 * 5.00244 * 14 13 12 33 33 H 1.09000 * 109.47574 * 245.00460 * 14 13 12 34 34 H 0.97004 * 119.99507 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1210 0.7651 5 6 2.2364 -1.1210 -0.7649 6 1 3.1716 -0.8756 -1.2682 7 6 1.3720 -2.1404 -1.4611 8 8 0.1637 -2.0531 -1.4015 9 7 1.9416 -3.1491 -2.1501 10 6 1.1376 -4.0975 -2.7972 11 6 -0.2662 -4.1171 -2.8105 12 6 -0.6594 -5.1856 -3.5403 13 7 0.4496 -5.8214 -3.9739 14 6 0.4807 -7.0313 -4.7993 15 6 1.3063 -6.7759 -6.0340 16 1 1.7625 -5.8093 -6.1880 17 6 1.4791 -7.7764 -6.9667 18 7 0.9231 -8.9534 -6.7793 19 14 2.5031 -7.4601 -8.4967 20 1 3.0143 -6.0662 -8.4708 21 1 3.6468 -8.4067 -8.5314 22 1 1.6617 -7.6559 -9.7046 23 7 1.5653 -5.1246 -3.4927 24 1 -0.3633 -0.9261 0.4456 25 1 -0.3633 0.8489 0.5793 26 1 -0.3633 0.0772 -1.0248 27 1 1.6112 -1.8581 1.2687 28 1 3.1715 -0.8751 1.2684 29 1 2.9079 -3.2191 -2.1974 30 1 -0.9168 -3.4054 -2.3241 31 1 -1.6794 -5.4788 -3.7400 32 1 -0.5352 -7.2987 -5.0904 33 1 0.9223 -7.8487 -4.2294 34 1 1.0451 -9.6574 -7.4354 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117711223.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:08 Heat of formation + Delta-G solvation = 68.839725 kcal Electronic energy + Delta-G solvation = -17406.612998 eV Core-core repulsion = 14535.347760 eV Total energy + Delta-G solvation = -2871.265238 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.75464 -39.69855 -36.80999 -34.66438 -33.34633 -31.00968 -29.34082 -28.65776 -26.81939 -24.75147 -22.80483 -21.52118 -20.89681 -19.86790 -19.31337 -17.02495 -16.64664 -16.57940 -15.52872 -15.23232 -14.80724 -14.35812 -14.09633 -13.69408 -13.16427 -12.93114 -12.51262 -12.38966 -12.34316 -12.22065 -11.75613 -11.62783 -11.05551 -10.87112 -10.51010 -10.34958 -10.27375 -10.21724 -9.91968 -9.48418 -9.36505 -8.64271 -8.12210 -7.46042 -6.25003 -4.30005 2.25744 2.77148 2.91508 3.21961 3.29453 3.36160 3.51075 3.80921 3.88886 4.31660 4.43477 4.62996 4.66190 4.95414 5.10302 5.19661 5.44905 5.56955 5.62911 5.74138 5.82985 5.87918 6.01050 6.27618 6.43949 6.49749 6.64493 6.86136 7.04974 7.43387 7.59086 7.71227 7.88973 8.04663 8.31286 8.64266 8.80200 9.35781 10.83798 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.045086 B = 0.004191 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.891254 B = 6679.112436 C = 6990.348677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.116 4.116 3 H 0.111 0.889 4 C -0.151 4.151 5 C -0.190 4.190 6 H 0.125 0.875 7 C 0.548 3.452 8 O -0.513 6.513 9 N -0.628 5.628 10 C 0.257 3.743 11 C -0.288 4.288 12 C 0.051 3.949 13 N -0.319 5.319 14 C 0.258 3.742 15 C -0.528 4.528 16 H 0.069 0.931 17 C 0.062 3.938 18 N -0.895 5.895 19 Si 0.908 3.092 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.282 1.282 23 N -0.305 5.305 24 H 0.065 0.935 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.411 0.589 30 H 0.160 0.840 31 H 0.168 0.832 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.329 14.239 12.371 18.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.135 4.135 3 H 0.129 0.871 4 C -0.188 4.188 5 C -0.212 4.212 6 H 0.143 0.857 7 C 0.334 3.666 8 O -0.387 6.387 9 N -0.275 5.275 10 C 0.004 3.996 11 C -0.319 4.319 12 C -0.099 4.099 13 N -0.101 5.101 14 C 0.140 3.860 15 C -0.566 4.566 16 H 0.087 0.913 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.735 3.265 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.207 1.207 23 N -0.136 5.136 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.246 0.754 30 H 0.177 0.823 31 H 0.185 0.815 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.455 13.376 11.832 17.917 hybrid contribution 0.504 0.267 -0.781 0.967 sum 1.959 13.643 11.051 17.666 Atomic orbital electron populations 1.21398 0.91368 1.01511 1.02830 1.22386 0.96727 0.93433 1.00956 0.87096 1.23114 1.03136 1.01939 0.90659 1.22205 1.02128 1.00979 0.95846 0.85693 1.19634 0.88253 0.80592 0.78127 1.90638 1.14312 1.73761 1.60026 1.42476 1.09763 1.24891 1.50390 1.19131 0.90488 0.92057 0.97950 1.21517 0.93114 1.04355 1.12898 1.22568 0.93765 0.94928 0.98687 1.49080 1.01354 1.22223 1.37414 1.19752 0.99527 0.77834 0.88867 1.21299 1.32097 0.99610 1.03622 0.91258 1.24949 0.95811 0.94659 0.98688 1.69933 1.43954 1.03220 1.36264 0.86271 0.79789 0.78566 0.81874 1.19569 1.20674 1.20746 1.77329 1.10596 1.07618 1.18093 0.91571 0.93326 0.91147 0.88055 0.87780 0.75439 0.82290 0.81508 0.92519 0.93722 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 8.43 37.16 0.31 -0.89 16 2 C -0.12 -1.04 6.41 -90.62 -0.58 -1.63 16 3 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.15 -1.26 9.88 -26.73 -0.26 -1.52 16 5 C -0.19 -1.89 6.19 -91.78 -0.57 -2.45 16 6 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 7 C 0.55 7.83 7.56 -10.98 -0.08 7.75 16 8 O -0.51 -8.59 10.24 5.55 0.06 -8.54 16 9 N -0.63 -9.86 5.45 -11.13 -0.06 -9.92 16 10 C 0.26 5.21 8.11 -154.39 -1.25 3.96 16 11 C -0.29 -5.74 9.60 -39.84 -0.38 -6.12 16 12 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 13 N -0.32 -7.49 3.67 -62.56 -0.23 -7.72 16 14 C 0.26 6.59 6.26 -5.19 -0.03 6.56 16 15 C -0.53 -14.77 9.24 -34.44 -0.32 -15.09 16 16 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.90 -25.40 13.29 55.43 0.74 -24.66 16 19 Si 0.91 21.40 29.54 -169.99 -5.02 16.38 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 N -0.31 -7.11 12.43 31.44 0.39 -6.72 16 24 H 0.07 0.79 7.02 -51.93 -0.36 0.43 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.86 7.26 -51.93 -0.38 0.49 16 27 H 0.10 0.94 8.05 -51.93 -0.42 0.52 16 28 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.41 5.30 8.82 -40.82 -0.36 4.94 16 30 H 0.16 3.06 5.92 -52.49 -0.31 2.74 16 31 H 0.17 2.75 8.06 -52.49 -0.42 2.32 16 32 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 33 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 294.51 15.07 4.44 4.44 Total: -1.00 -31.79 294.51 -7.48 -39.28 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -4.33 Total: 4.46 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -3.46 Total: -7.01 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.84 Total: -49.02 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.06 Total: -8.54 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.79 -7.48 -39.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117711223.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.116 kcal (2) G-P(sol) polarization free energy of solvation -31.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds