Wall clock time and date at job start Thu Apr 9 2020 12:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 115.55950 * 2 1 4 4 C 1.53002 * 117.49855 * 145.68545 * 2 1 3 5 5 C 1.52995 * 117.49733 * 214.30611 * 2 1 3 6 6 H 1.08998 * 117.51744 * 145.02782 * 5 2 1 7 7 C 1.50698 * 117.50058 * 0.02562 * 5 2 1 8 8 O 1.21292 * 120.00277 * 359.97438 * 7 5 2 9 9 N 1.34780 * 120.00045 * 179.97438 * 7 5 2 10 10 C 1.40162 * 120.00035 * 179.97438 * 9 7 5 11 11 C 1.40404 * 125.97093 * 0.02562 * 10 9 7 12 12 C 1.35235 * 107.86890 * 179.97438 * 11 10 9 13 13 N 1.34978 * 107.85839 * 0.02562 * 12 11 10 14 14 C 1.46496 * 125.97492 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47106 * 124.99953 * 14 13 12 16 16 H 1.07999 * 119.99515 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00176 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99883 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47216 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 119.99848 * 19 17 15 22 22 H 1.48501 * 109.47057 * 239.99829 * 19 17 15 23 23 N 1.31214 * 125.97297 * 180.25916 * 10 9 7 24 24 H 1.09005 * 109.47035 * 205.69378 * 1 2 3 25 25 H 1.09004 * 109.46899 * 325.69144 * 1 2 3 26 26 H 1.09000 * 109.47123 * 85.69120 * 1 2 3 27 27 H 1.09001 * 117.49372 * 359.97438 * 4 2 1 28 28 H 1.08998 * 117.49894 * 214.98160 * 4 2 1 29 29 H 0.97000 * 119.99686 * 0.02562 * 9 7 5 30 30 H 1.08001 * 126.06971 * 359.95734 * 11 10 9 31 31 H 1.07994 * 126.07585 * 179.97438 * 12 11 10 32 32 H 1.09001 * 109.47001 * 5.00244 * 14 13 12 33 33 H 1.09000 * 109.47574 * 245.00460 * 14 13 12 34 34 H 0.97004 * 119.99507 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1210 0.7651 5 6 2.2364 -1.1210 -0.7649 6 1 3.1716 -0.8756 -1.2682 7 6 1.3720 -2.1404 -1.4611 8 8 0.1637 -2.0531 -1.4015 9 7 1.9416 -3.1491 -2.1501 10 6 1.1376 -4.0975 -2.7972 11 6 -0.2662 -4.1171 -2.8105 12 6 -0.6594 -5.1856 -3.5403 13 7 0.4496 -5.8214 -3.9739 14 6 0.4807 -7.0313 -4.7993 15 6 1.3063 -6.7759 -6.0340 16 1 1.7625 -5.8093 -6.1880 17 6 1.4791 -7.7764 -6.9667 18 7 0.9231 -8.9534 -6.7793 19 14 2.5031 -7.4601 -8.4967 20 1 3.0143 -6.0662 -8.4708 21 1 3.6468 -8.4067 -8.5314 22 1 1.6617 -7.6559 -9.7046 23 7 1.5653 -5.1246 -3.4927 24 1 -0.3633 -0.9261 0.4456 25 1 -0.3633 0.8489 0.5793 26 1 -0.3633 0.0772 -1.0248 27 1 1.6112 -1.8581 1.2687 28 1 3.1715 -0.8751 1.2684 29 1 2.9079 -3.2191 -2.1974 30 1 -0.9168 -3.4054 -2.3241 31 1 -1.6794 -5.4788 -3.7400 32 1 -0.5352 -7.2987 -5.0904 33 1 0.9223 -7.8487 -4.2294 34 1 1.0451 -9.6574 -7.4354 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117711223.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:08 Heat of formation + Delta-G solvation = 49.122869 kcal Electronic energy + Delta-G solvation = -17407.467985 eV Core-core repulsion = 14535.347760 eV Total energy + Delta-G solvation = -2872.120225 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.24230 -40.94192 -37.75096 -36.12132 -35.26732 -32.82407 -30.98446 -29.57199 -28.62568 -26.03094 -24.53382 -22.65953 -22.05738 -21.31709 -20.55254 -18.70922 -18.18130 -18.01702 -17.03684 -16.54211 -16.21928 -15.94011 -15.42881 -15.07925 -14.54535 -14.24138 -14.03122 -13.83468 -13.64244 -13.48866 -13.13495 -12.93047 -12.72541 -12.32935 -12.32069 -12.05339 -11.59883 -11.38418 -11.17668 -10.97138 -10.73820 -10.55089 -9.76665 -9.12606 -8.34575 -6.48899 0.92309 1.34665 1.36685 1.38925 1.44196 1.52055 2.17849 2.29645 2.42580 2.88333 2.97203 3.55907 3.76699 3.94529 3.99146 4.21060 4.26483 4.53157 4.77867 4.82817 4.89265 4.91586 4.93139 5.00210 5.02751 5.09522 5.16695 5.26358 5.55309 5.60185 5.78384 5.93648 6.24457 6.31035 6.63500 7.02461 7.15965 7.21364 8.73368 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.045086 B = 0.004191 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.891254 B = 6679.112436 C = 6990.348677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.115 4.115 3 H 0.141 0.859 4 C -0.136 4.136 5 C -0.197 4.197 6 H 0.154 0.846 7 C 0.543 3.457 8 O -0.540 6.540 9 N -0.625 5.625 10 C 0.264 3.736 11 C -0.294 4.294 12 C 0.055 3.945 13 N -0.344 5.344 14 C 0.272 3.728 15 C -0.548 4.548 16 H 0.051 0.949 17 C 0.019 3.981 18 N -0.921 5.921 19 Si 0.973 3.027 20 H -0.275 1.275 21 H -0.272 1.272 22 H -0.269 1.269 23 N -0.348 5.348 24 H 0.044 0.956 25 H 0.068 0.932 26 H 0.047 0.953 27 H 0.087 0.913 28 H 0.136 0.864 29 H 0.423 0.577 30 H 0.168 0.832 31 H 0.201 0.799 32 H 0.059 0.941 33 H 0.021 0.979 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.337 15.949 12.807 20.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.134 4.134 3 H 0.159 0.841 4 C -0.174 4.174 5 C -0.218 4.218 6 H 0.172 0.828 7 C 0.331 3.669 8 O -0.416 6.416 9 N -0.274 5.274 10 C 0.010 3.990 11 C -0.325 4.325 12 C -0.094 4.094 13 N -0.126 5.126 14 C 0.153 3.847 15 C -0.586 4.586 16 H 0.070 0.930 17 C -0.182 4.182 18 N -0.559 5.559 19 Si 0.797 3.203 20 H -0.200 1.200 21 H -0.197 1.197 22 H -0.194 1.194 23 N -0.179 5.179 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.106 0.894 28 H 0.154 0.846 29 H 0.260 0.740 30 H 0.185 0.815 31 H 0.218 0.782 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.469 15.104 12.292 19.630 hybrid contribution 0.124 -0.179 -0.798 0.828 sum 2.593 14.925 11.494 19.016 Atomic orbital electron populations 1.21339 0.93010 1.01255 1.01478 1.22547 0.95579 0.94743 1.00497 0.84130 1.23234 1.04076 1.00833 0.89212 1.22284 1.02595 1.00115 0.96787 0.82792 1.20580 0.88564 0.80463 0.77244 1.90622 1.15912 1.74307 1.60761 1.42707 1.10215 1.24305 1.50155 1.19524 0.91366 0.91644 0.96495 1.21718 0.93279 1.04497 1.13030 1.23178 0.94501 0.94262 0.97417 1.48842 1.02427 1.22555 1.38777 1.19348 0.98889 0.78329 0.88120 1.21426 1.32992 0.99154 1.05049 0.93030 1.25750 0.96671 0.94289 1.01482 1.70006 1.44653 1.03885 1.37398 0.85278 0.78455 0.78180 0.78364 1.19952 1.19742 1.19442 1.77246 1.11369 1.09183 1.20095 0.93702 0.91356 0.93404 0.89436 0.84580 0.73951 0.81497 0.78229 0.92345 0.96073 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.26 8.43 71.98 0.61 -1.65 16 2 C -0.12 -1.73 6.41 -10.79 -0.07 -1.79 16 3 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.14 -1.84 9.88 30.59 0.30 -1.54 16 5 C -0.20 -3.37 6.19 -11.54 -0.07 -3.44 16 6 H 0.15 1.77 8.14 -2.39 -0.02 1.75 16 7 C 0.54 14.96 7.56 87.66 0.66 15.62 16 8 O -0.54 -17.98 10.24 -3.07 -0.03 -18.01 16 9 N -0.62 -19.20 5.45 -307.51 -1.68 -20.87 16 10 C 0.26 10.78 8.11 133.32 1.08 11.86 16 11 C -0.29 -11.74 9.60 22.10 0.21 -11.53 16 12 C 0.06 2.22 11.44 83.52 0.96 3.18 16 13 N -0.34 -16.50 3.67 -351.84 -1.29 -17.79 16 14 C 0.27 14.33 6.26 85.64 0.54 14.86 16 15 C -0.55 -31.31 9.24 25.60 0.24 -31.07 16 16 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 17 C 0.02 1.02 5.46 84.65 0.46 1.49 16 18 N -0.92 -52.45 13.29 21.45 0.28 -52.16 16 19 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 N -0.35 -16.54 12.43 -54.45 -0.68 -17.22 16 24 H 0.04 1.06 7.02 -2.38 -0.02 1.04 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.05 1.16 7.26 -2.39 -0.02 1.14 16 27 H 0.09 1.46 8.05 -2.39 -0.02 1.44 16 28 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.42 10.53 8.82 -92.71 -0.82 9.71 16 30 H 0.17 6.40 5.92 -2.91 -0.02 6.38 16 31 H 0.20 6.38 8.06 -2.91 -0.02 6.36 16 32 H 0.06 3.00 8.07 -2.39 -0.02 2.98 16 33 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -69.68 294.51 3.85 -65.83 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.30 Total: 18.40 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 4.91 Total: -4.03 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -3.36 Total: -108.05 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.03 Total: -18.01 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -69.68 3.85 -65.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117711223.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.955 kcal (2) G-P(sol) polarization free energy of solvation -69.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds