Wall clock time and date at job start Thu Apr 9 2020 12:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46907 * 110.99975 * 2 1 4 4 C 1.50693 * 109.47015 * 66.04813 * 3 2 1 5 5 O 1.21292 * 120.00249 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99816 * 180.02562 * 4 3 2 7 7 C 1.37098 * 120.00254 * 179.97438 * 6 4 3 8 8 H 1.08005 * 119.99724 * 0.02562 * 7 6 4 9 9 C 1.38944 * 120.00374 * 180.02562 * 7 6 4 10 10 N 1.31408 * 119.99982 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00134 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47110 * 89.99862 * 11 9 7 13 13 H 1.48496 * 109.47159 * 209.99612 * 11 9 7 14 14 H 1.48498 * 109.47150 * 330.00124 * 11 9 7 15 15 C 1.46904 * 111.00121 * 236.04413 * 2 1 3 16 16 C 1.50695 * 109.47190 * 293.95627 * 15 2 1 17 17 C 1.38678 * 120.41675 * 270.25239 * 16 15 2 18 18 C 1.38627 * 118.41930 * 180.24221 * 17 16 15 19 19 C 1.38232 * 119.16085 * 359.75178 * 18 17 16 20 20 N 1.31857 * 120.76541 * 359.97438 * 19 18 17 21 21 C 1.31889 * 121.72235 * 0.02562 * 20 19 18 22 22 H 1.09002 * 109.46973 * 183.95386 * 1 2 3 23 23 H 1.08998 * 109.46823 * 303.95614 * 1 2 3 24 24 H 1.08996 * 109.47167 * 63.95467 * 1 2 3 25 25 H 1.09000 * 109.46788 * 186.04531 * 3 2 1 26 26 H 1.08994 * 109.46987 * 306.04018 * 3 2 1 27 27 H 0.96997 * 120.00314 * 359.97438 * 6 4 3 28 28 H 0.96998 * 120.00323 * 180.02562 * 10 9 7 29 29 H 1.09001 * 109.46737 * 173.95446 * 15 2 1 30 30 H 1.08996 * 109.46745 * 53.95365 * 15 2 1 31 31 H 1.07994 * 120.78944 * 359.96926 * 17 16 15 32 32 H 1.07997 * 120.42083 * 179.72800 * 18 17 16 33 33 H 1.07999 * 119.61954 * 180.02562 * 19 18 17 34 34 H 1.08002 * 119.61237 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2984 5 8 1.0047 1.4456 2.1408 6 7 2.0181 3.3202 1.5233 7 6 1.6915 3.9351 2.7043 8 1 1.1293 3.3992 3.4547 9 6 2.0839 5.2477 2.9359 10 7 2.7676 5.8999 2.0227 11 14 1.6396 6.0853 4.5454 12 1 2.7170 5.8497 5.5400 13 1 1.4863 7.5447 4.3181 14 1 0.3624 5.5272 5.0577 15 6 1.9955 -0.7660 -1.1376 16 6 1.6370 -2.2204 -0.9729 17 6 2.4878 -3.0809 -0.2955 18 6 2.1194 -4.4117 -0.1727 19 6 0.9224 -4.8326 -0.7212 20 7 0.1354 -3.9849 -1.3541 21 6 0.4537 -2.7122 -1.4899 22 1 -0.3633 -1.0252 0.0709 23 1 -0.3633 0.5740 0.8524 24 1 -0.3633 0.4512 -0.9233 25 1 3.0798 1.3444 -0.1082 26 1 1.5612 1.9273 -0.8309 27 1 2.5234 3.8014 0.8495 28 1 3.0419 6.8162 2.1845 29 1 3.0798 -0.6611 -1.1755 30 1 1.5612 -0.3873 -2.0627 31 1 3.4172 -2.7237 0.1226 32 1 2.7598 -5.1109 0.3445 33 1 0.6280 -5.8677 -0.6295 34 1 -0.2163 -2.0477 -2.0153 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119022597.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:10 Heat of formation + Delta-G solvation = 8.546481 kcal Electronic energy + Delta-G solvation = -17423.434175 eV Core-core repulsion = 14549.554425 eV Total energy + Delta-G solvation = -2873.879749 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.27783 -38.54162 -36.46426 -33.90436 -32.63811 -31.62788 -31.21973 -27.86647 -27.15261 -24.81194 -23.56752 -22.98528 -21.08590 -19.17302 -17.85142 -17.12353 -16.45235 -16.18179 -15.46187 -15.15205 -14.71770 -14.50531 -13.92390 -13.64227 -13.59979 -13.33231 -13.07840 -12.92502 -12.13714 -11.81874 -11.64212 -11.49635 -11.29083 -11.15956 -10.94682 -10.39477 -10.22277 -9.82077 -9.49936 -9.47856 -9.07478 -8.46964 -7.98216 -7.86340 -6.42006 -3.82774 1.03936 1.26473 3.17744 3.26432 3.32239 3.67315 3.90263 4.11673 4.31094 4.39365 4.73197 4.76872 4.95265 4.99826 5.08300 5.24298 5.32752 5.43695 5.60950 5.69022 5.70225 5.75757 5.94491 5.96569 6.07478 6.27020 6.28211 6.55224 6.64331 7.23263 7.33236 7.55109 7.90809 8.06266 8.61750 9.18113 9.54235 10.06247 10.75781 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.053505 B = 0.003932 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.186630 B = 7118.900943 C = 7204.991462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.514 5.514 3 C 0.046 3.954 4 C 0.444 3.556 5 O -0.577 6.577 6 N -0.564 5.564 7 C -0.299 4.299 8 H 0.103 0.897 9 C 0.022 3.978 10 N -0.902 5.902 11 Si 0.930 3.070 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.094 3.906 16 C -0.120 4.120 17 C -0.054 4.054 18 C -0.174 4.174 19 C 0.090 3.910 20 N -0.488 5.488 21 C 0.104 3.896 22 H 0.060 0.940 23 H 0.097 0.903 24 H 0.016 0.984 25 H 0.089 0.911 26 H 0.049 0.951 27 H 0.392 0.608 28 H 0.271 0.729 29 H 0.084 0.916 30 H 0.044 0.956 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.152 0.848 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.771 -13.879 -8.548 16.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.238 5.238 3 C -0.086 4.086 4 C 0.229 3.771 5 O -0.461 6.461 6 N -0.201 5.201 7 C -0.428 4.428 8 H 0.121 0.879 9 C -0.179 4.179 10 N -0.544 5.544 11 Si 0.757 3.243 12 H -0.204 1.204 13 H -0.209 1.209 14 H -0.194 1.194 15 C -0.035 4.035 16 C -0.122 4.122 17 C -0.081 4.081 18 C -0.194 4.194 19 C -0.067 4.067 20 N -0.196 5.196 21 C -0.054 4.054 22 H 0.078 0.922 23 H 0.115 0.885 24 H 0.034 0.966 25 H 0.107 0.893 26 H 0.067 0.933 27 H 0.225 0.775 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.169 0.831 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.221 -14.601 -7.895 16.600 hybrid contribution 0.755 1.507 0.019 1.686 sum 0.534 -13.094 -7.875 15.289 Atomic orbital electron populations 1.22603 0.86626 1.02070 1.01536 1.61603 1.08928 1.12755 1.40489 1.21881 1.00697 0.88669 0.97306 1.19714 0.85495 0.82943 0.88930 1.90492 1.43838 1.64651 1.47109 1.41861 1.49459 1.10719 1.18063 1.19699 1.32951 0.95420 0.94757 0.87924 1.25251 0.96832 0.96625 0.99207 1.69608 1.38142 1.12256 1.34372 0.85863 0.79110 0.78047 0.81304 1.20400 1.20947 1.19419 1.21033 1.00744 0.89136 0.92565 1.20779 0.95965 0.96568 0.98888 1.21509 0.99467 0.92759 0.94331 1.22140 0.98678 0.96778 1.01830 1.22716 0.90837 0.99347 0.93807 1.67677 1.33029 1.03682 1.15259 1.22663 0.94174 0.91840 0.96689 0.92166 0.88480 0.96565 0.89313 0.93288 0.77495 0.91883 0.89725 0.93789 0.84661 0.84904 0.83056 0.83210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.79 60.07 0.53 0.85 16 2 N -0.51 -8.50 4.49 -245.83 -1.10 -9.60 16 3 C 0.05 0.80 5.45 -4.98 -0.03 0.77 16 4 C 0.44 10.40 7.47 -10.99 -0.08 10.31 16 5 O -0.58 -15.53 13.91 5.55 0.08 -15.45 16 6 N -0.56 -14.19 5.29 -10.97 -0.06 -14.25 16 7 C -0.30 -8.30 9.68 -14.94 -0.14 -8.44 16 8 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 9 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 10 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 11 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 15 C 0.09 1.17 5.14 -4.98 -0.03 1.15 16 16 C -0.12 -1.49 4.89 -104.48 -0.51 -2.00 16 17 C -0.05 -0.63 9.86 -39.28 -0.39 -1.01 16 18 C -0.17 -1.78 10.11 -39.44 -0.40 -2.18 16 19 C 0.09 0.98 11.18 -17.54 -0.20 0.79 16 20 N -0.49 -6.39 10.36 -13.25 -0.14 -6.53 16 21 C 0.10 1.30 9.15 -17.55 -0.16 1.14 16 22 H 0.06 0.94 6.17 -51.93 -0.32 0.62 16 23 H 0.10 1.97 5.82 -51.93 -0.30 1.66 16 24 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.09 1.37 7.93 -51.93 -0.41 0.96 16 26 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 27 H 0.39 9.40 7.90 -40.82 -0.32 9.07 16 28 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.08 0.95 7.89 -51.93 -0.41 0.54 16 30 H 0.04 0.49 8.07 -51.93 -0.42 0.08 16 31 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.15 1.67 8.04 -52.49 -0.42 1.24 16 LS Contribution 292.93 15.07 4.41 4.41 Total: -1.00 -31.91 292.93 -6.84 -38.75 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -4.23 Total: 8.53 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.50 Total: 1.87 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.58 Total: -54.10 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: 0.08 Total: -15.45 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.91 -6.84 -38.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119022597.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.296 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds