Wall clock time and date at job start Thu Apr 9 2020 12:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46907 * 110.99975 * 2 1 4 4 C 1.50693 * 109.47015 * 66.04813 * 3 2 1 5 5 O 1.21292 * 120.00249 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99816 * 180.02562 * 4 3 2 7 7 C 1.37098 * 120.00254 * 179.97438 * 6 4 3 8 8 H 1.08005 * 119.99724 * 0.02562 * 7 6 4 9 9 C 1.38944 * 120.00374 * 180.02562 * 7 6 4 10 10 N 1.31408 * 119.99982 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00134 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47110 * 89.99862 * 11 9 7 13 13 H 1.48496 * 109.47159 * 209.99612 * 11 9 7 14 14 H 1.48498 * 109.47150 * 330.00124 * 11 9 7 15 15 C 1.46904 * 111.00121 * 236.04413 * 2 1 3 16 16 C 1.50695 * 109.47190 * 293.95627 * 15 2 1 17 17 C 1.38678 * 120.41675 * 270.25239 * 16 15 2 18 18 C 1.38627 * 118.41930 * 180.24221 * 17 16 15 19 19 C 1.38232 * 119.16085 * 359.75178 * 18 17 16 20 20 N 1.31857 * 120.76541 * 359.97438 * 19 18 17 21 21 C 1.31889 * 121.72235 * 0.02562 * 20 19 18 22 22 H 1.09002 * 109.46973 * 183.95386 * 1 2 3 23 23 H 1.08998 * 109.46823 * 303.95614 * 1 2 3 24 24 H 1.08996 * 109.47167 * 63.95467 * 1 2 3 25 25 H 1.09000 * 109.46788 * 186.04531 * 3 2 1 26 26 H 1.08994 * 109.46987 * 306.04018 * 3 2 1 27 27 H 0.96997 * 120.00314 * 359.97438 * 6 4 3 28 28 H 0.96998 * 120.00323 * 180.02562 * 10 9 7 29 29 H 1.09001 * 109.46737 * 173.95446 * 15 2 1 30 30 H 1.08996 * 109.46745 * 53.95365 * 15 2 1 31 31 H 1.07994 * 120.78944 * 359.96926 * 17 16 15 32 32 H 1.07997 * 120.42083 * 179.72800 * 18 17 16 33 33 H 1.07999 * 119.61954 * 180.02562 * 19 18 17 34 34 H 1.08002 * 119.61237 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2984 5 8 1.0047 1.4456 2.1408 6 7 2.0181 3.3202 1.5233 7 6 1.6915 3.9351 2.7043 8 1 1.1293 3.3992 3.4547 9 6 2.0839 5.2477 2.9359 10 7 2.7676 5.8999 2.0227 11 14 1.6396 6.0853 4.5454 12 1 2.7170 5.8497 5.5400 13 1 1.4863 7.5447 4.3181 14 1 0.3624 5.5272 5.0577 15 6 1.9955 -0.7660 -1.1376 16 6 1.6370 -2.2204 -0.9729 17 6 2.4878 -3.0809 -0.2955 18 6 2.1194 -4.4117 -0.1727 19 6 0.9224 -4.8326 -0.7212 20 7 0.1354 -3.9849 -1.3541 21 6 0.4537 -2.7122 -1.4899 22 1 -0.3633 -1.0252 0.0709 23 1 -0.3633 0.5740 0.8524 24 1 -0.3633 0.4512 -0.9233 25 1 3.0798 1.3444 -0.1082 26 1 1.5612 1.9273 -0.8309 27 1 2.5234 3.8014 0.8495 28 1 3.0419 6.8162 2.1845 29 1 3.0798 -0.6611 -1.1755 30 1 1.5612 -0.3873 -2.0627 31 1 3.4172 -2.7237 0.1226 32 1 2.7598 -5.1109 0.3445 33 1 0.6280 -5.8677 -0.6295 34 1 -0.2163 -2.0477 -2.0153 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119022597.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:09 Heat of formation + Delta-G solvation = -14.884151 kcal Electronic energy + Delta-G solvation = -17424.450203 eV Core-core repulsion = 14549.554425 eV Total energy + Delta-G solvation = -2874.895778 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.18659 -40.24729 -37.84295 -35.87973 -33.61432 -33.25961 -32.50939 -29.36728 -28.24359 -26.62769 -24.51527 -24.14779 -22.14967 -20.97500 -19.84764 -18.03374 -17.77671 -17.32047 -16.74538 -16.62328 -16.25109 -15.88243 -15.54094 -15.16166 -14.88990 -14.48096 -14.08563 -13.89035 -13.72117 -13.46781 -13.09023 -12.82991 -12.70696 -12.49634 -12.41570 -12.30718 -12.11708 -11.45208 -10.70614 -10.39850 -10.25541 -9.99165 -9.94924 -9.19206 -8.45515 -5.93883 0.17882 0.39893 1.38386 1.42162 1.54614 2.07570 2.29215 2.68029 3.08946 3.21659 3.45546 3.56674 3.83553 3.96790 4.13693 4.15843 4.25151 4.36235 4.49474 4.50878 4.55610 4.65933 4.72865 4.78083 4.91291 5.15656 5.23947 5.41107 5.42246 5.79967 5.88757 6.05891 6.16933 6.62678 7.04769 7.14860 7.58655 8.15068 8.71886 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.053505 B = 0.003932 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.186630 B = 7118.900943 C = 7204.991462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.534 5.534 3 C 0.058 3.942 4 C 0.441 3.559 5 O -0.617 6.617 6 N -0.574 5.574 7 C -0.332 4.332 8 H 0.077 0.923 9 C -0.012 4.012 10 N -0.920 5.920 11 Si 0.991 3.009 12 H -0.271 1.271 13 H -0.271 1.271 14 H -0.274 1.274 15 C 0.098 3.902 16 C -0.133 4.133 17 C -0.066 4.066 18 C -0.171 4.171 19 C 0.082 3.918 20 N -0.514 5.514 21 C 0.091 3.909 22 H 0.065 0.935 23 H 0.054 0.946 24 H 0.036 0.964 25 H 0.115 0.885 26 H 0.072 0.928 27 H 0.396 0.604 28 H 0.277 0.723 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.146 0.854 32 H 0.162 0.838 33 H 0.178 0.822 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.598 -14.455 -9.194 17.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.258 5.258 3 C -0.073 4.073 4 C 0.228 3.772 5 O -0.503 6.503 6 N -0.212 5.212 7 C -0.462 4.462 8 H 0.095 0.905 9 C -0.212 4.212 10 N -0.562 5.562 11 Si 0.815 3.185 12 H -0.197 1.197 13 H -0.195 1.195 14 H -0.199 1.199 15 C -0.029 4.029 16 C -0.135 4.135 17 C -0.093 4.093 18 C -0.191 4.191 19 C -0.075 4.075 20 N -0.223 5.223 21 C -0.065 4.065 22 H 0.084 0.916 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.133 0.867 26 H 0.089 0.911 27 H 0.230 0.770 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.080 0.920 31 H 0.164 0.836 32 H 0.180 0.820 33 H 0.195 0.805 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.621 -15.180 -8.573 17.444 hybrid contribution 0.495 1.567 0.201 1.656 sum 1.116 -13.613 -8.372 16.020 Atomic orbital electron populations 1.22403 0.87202 1.01782 1.00571 1.61518 1.08680 1.12357 1.43247 1.21756 1.02392 0.89101 0.94008 1.20814 0.83668 0.82213 0.90493 1.90473 1.45179 1.65437 1.49182 1.41923 1.50105 1.11549 1.17608 1.19640 1.34407 0.96385 0.95761 0.90472 1.25995 0.96301 0.96589 1.02277 1.69664 1.38202 1.12676 1.35611 0.84958 0.78618 0.77407 0.77539 1.19665 1.19542 1.19890 1.21082 1.01659 0.88565 0.91615 1.20824 0.96334 0.96642 0.99707 1.21804 0.99875 0.93421 0.94179 1.22470 0.98672 0.96815 1.01116 1.23241 0.90873 1.00326 0.93029 1.67691 1.34073 1.04187 1.16341 1.22827 0.94534 0.92065 0.97115 0.91613 0.92715 0.94572 0.86680 0.91052 0.76962 0.91325 0.88033 0.92043 0.83615 0.82023 0.80480 0.82547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 8.79 127.69 1.12 2.06 16 2 N -0.53 -16.88 4.49 -931.65 -4.18 -21.06 16 3 C 0.06 1.94 5.45 85.55 0.47 2.41 16 4 C 0.44 20.81 7.47 87.66 0.66 21.46 16 5 O -0.62 -34.16 13.91 -3.07 -0.04 -34.21 16 6 N -0.57 -29.26 5.29 -306.99 -1.62 -30.88 16 7 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 8 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 9 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 10 N -0.92 -49.44 13.05 21.66 0.28 -49.16 16 11 Si 0.99 42.97 29.55 68.60 2.03 44.99 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 13 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 15 C 0.10 2.22 5.14 85.55 0.44 2.66 16 16 C -0.13 -3.08 4.89 -19.77 -0.10 -3.17 16 17 C -0.07 -1.40 9.86 22.47 0.22 -1.18 16 18 C -0.17 -3.10 10.11 22.36 0.23 -2.87 16 19 C 0.08 1.63 11.18 84.69 0.95 2.58 16 20 N -0.51 -12.83 10.36 -195.83 -2.03 -14.86 16 21 C 0.09 2.19 9.15 84.67 0.77 2.96 16 22 H 0.07 2.04 6.17 -2.39 -0.01 2.03 16 23 H 0.05 2.27 5.82 -2.39 -0.01 2.26 16 24 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.12 3.25 7.93 -2.39 -0.02 3.24 16 26 H 0.07 2.09 8.12 -2.39 -0.02 2.07 16 27 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 28 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 29 H 0.10 1.95 7.89 -2.39 -0.02 1.93 16 30 H 0.06 1.19 8.07 -2.39 -0.02 1.18 16 31 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 32 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.16 3.31 8.04 -2.91 -0.02 3.29 16 Total: -1.00 -69.65 292.93 0.85 -68.81 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: 0.38 Total: 27.68 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 6.04 Total: 8.69 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -7.55 Total: -115.96 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -0.04 Total: -34.21 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -69.65 0.85 -68.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119022597.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.922 kcal (2) G-P(sol) polarization free energy of solvation -69.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds