Wall clock time and date at job start Thu Apr 9 2020 12:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36934 * 120.00469 * 2 1 4 4 H 1.07996 * 119.99993 * 203.04642 * 3 2 1 5 5 C 1.38812 * 119.99538 * 23.04335 * 3 2 1 6 6 N 1.31616 * 120.00421 * 12.93442 * 5 3 2 7 7 Si 1.86806 * 119.99734 * 192.92816 * 5 3 2 8 8 H 1.48501 * 109.46935 * 90.00487 * 7 5 3 9 9 H 1.48504 * 109.47002 * 210.00282 * 7 5 3 10 10 H 1.48498 * 109.47147 * 330.00139 * 7 5 3 11 11 C 1.46504 * 119.99552 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46854 * 90.00335 * 11 2 1 13 13 C 1.53000 * 109.47113 * 179.97438 * 12 11 2 14 14 C 1.50707 * 109.47128 * 179.97438 * 13 12 11 15 15 N 1.30348 * 125.89628 * 269.99915 * 14 13 12 16 16 N 1.39904 * 109.20539 * 179.97438 * 15 14 13 17 17 H 0.97000 * 125.76317 * 180.25955 * 16 15 14 18 18 C 1.34937 * 108.47369 * 0.02562 * 16 15 14 19 19 N 1.38177 * 126.44169 * 180.02562 * 18 16 15 20 20 C 1.39227 * 107.11719 * 359.97438 * 18 16 15 21 21 C 1.43196 * 126.49957 * 179.97438 * 20 18 16 22 22 N 6.13201 * 146.69041 * 239.87931 * 2 1 3 23 23 H 1.09009 * 109.47466 * 275.12380 * 1 2 3 24 24 H 1.09004 * 109.47503 * 35.12062 * 1 2 3 25 25 H 1.08999 * 109.47801 * 155.12440 * 1 2 3 26 26 H 0.97001 * 120.00597 * 179.97438 * 6 5 3 27 27 H 1.08995 * 109.47393 * 330.00389 * 11 2 1 28 28 H 1.08999 * 109.47241 * 209.99685 * 11 2 1 29 29 H 1.09001 * 109.47672 * 59.99501 * 12 11 2 30 30 H 1.09001 * 109.47152 * 299.99530 * 12 11 2 31 31 H 1.09004 * 109.46956 * 60.00293 * 13 12 11 32 32 H 1.08999 * 109.47289 * 299.99538 * 13 12 11 33 33 H 0.97007 * 119.99994 * 359.97438 * 19 18 16 34 34 H 0.96997 * 120.00360 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1650 1.2231 -0.3661 5 6 1.5387 2.3400 0.4706 6 7 0.4119 2.2597 1.1458 7 14 2.3161 4.0073 0.1455 8 1 1.7989 4.5533 -1.1349 9 1 1.9761 4.9363 1.2531 10 1 3.7910 3.8576 0.0602 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7111 -1.4418 13 6 3.2178 -3.0358 -1.4412 14 6 3.4685 -3.4717 -2.8619 15 7 2.6813 -4.2211 -3.5816 16 7 3.2518 -4.4072 -4.8454 17 1 2.8662 -4.9224 -5.5712 18 6 4.4267 -3.7448 -4.8859 19 7 5.2956 -3.6796 -5.9583 20 6 4.5981 -3.1382 -3.6445 21 6 5.7083 -2.3307 -3.2372 22 7 6.5896 -1.6899 -2.9128 23 1 -0.3634 0.0918 1.0236 24 1 -0.3634 0.8406 -0.5912 25 1 -0.3635 -0.9323 -0.4323 26 1 -0.0149 3.0662 1.4750 27 1 1.6083 -2.0282 0.5146 28 1 3.1498 -1.1383 0.5143 29 1 3.0415 -0.9517 -1.9560 30 1 1.5000 -1.8416 -1.9556 31 1 2.6290 -3.7955 -0.9270 32 1 4.1703 -2.9049 -0.9276 33 1 5.0817 -4.1405 -6.7846 34 1 6.1196 -3.1731 -5.8849 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119862643.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:11 Heat of formation + Delta-G solvation = 114.143559 kcal Electronic energy + Delta-G solvation = -17338.984773 eV Core-core repulsion = 14501.976808 eV Total energy + Delta-G solvation = -2837.007965 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.128 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.45901 -36.26232 -36.12021 -35.27075 -33.52709 -31.49522 -30.02151 -29.00280 -26.20306 -25.58780 -22.74728 -22.48727 -20.23751 -20.00345 -18.99312 -17.67090 -16.56586 -16.33063 -15.37096 -15.31372 -14.78529 -14.08747 -13.68413 -13.26137 -13.00083 -12.88022 -12.83943 -12.50961 -12.14983 -11.90002 -11.40452 -11.17601 -10.80700 -10.75137 -10.69080 -10.46181 -10.31690 -10.02639 -9.75559 -9.61813 -9.24826 -8.42200 -8.09012 -6.60004 -5.60045 -3.06206 1.59395 2.19139 2.20054 2.89703 3.38859 3.46788 3.52679 3.55035 3.72754 4.19264 4.61054 4.80095 4.88099 5.30719 5.52631 5.58249 5.67302 5.85654 6.06212 6.17971 6.25781 6.45244 6.53164 6.62885 6.85676 6.88894 6.98894 7.14984 7.17567 7.50685 7.60655 7.85170 7.86392 7.93450 8.53266 9.37195 10.01238 10.50231 11.44709 Molecular weight = 249.13amu Principal moments of inertia in cm(-1) A = 0.026043 B = 0.004984 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.902194 B = 5616.859216 C = 6224.585993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.604 5.604 3 C -0.249 4.249 4 H 0.067 0.933 5 C 0.000 4.000 6 N -0.910 5.910 7 Si 0.901 3.099 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.279 1.279 11 C 0.153 3.847 12 C -0.129 4.129 13 C -0.048 4.048 14 C 0.173 3.827 15 N -0.294 5.294 16 N -0.494 5.494 17 H 0.441 0.559 18 C 0.424 3.576 19 N -0.841 5.841 20 C -0.257 4.257 21 C 0.296 3.704 22 N -0.445 5.445 23 H 0.030 0.970 24 H 0.038 0.962 25 H -0.002 1.002 26 H 0.251 0.749 27 H 0.037 0.963 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.406 0.594 34 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.243 -15.990 -14.536 22.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.327 5.327 3 C -0.379 4.379 4 H 0.085 0.915 5 C -0.198 4.198 6 N -0.555 5.555 7 Si 0.732 3.268 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.025 3.975 12 C -0.171 4.171 13 C -0.088 4.088 14 C 0.002 3.998 15 N -0.115 5.115 16 N -0.206 5.206 17 H 0.285 0.715 18 C 0.187 3.813 19 N -0.389 5.389 20 C -0.278 4.278 21 C -0.018 4.018 22 N -0.123 5.123 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.017 0.983 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.236 0.764 34 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 6.338 -15.511 -13.906 21.775 hybrid contribution 0.765 0.912 -1.254 1.729 sum 7.103 -14.600 -15.159 22.213 Atomic orbital electron populations 1.20771 0.82760 0.95306 0.99318 1.43894 1.01835 1.00782 1.86142 1.19212 0.98192 0.85702 1.34818 0.91489 1.24995 0.97961 0.98400 0.98411 1.70071 1.19567 1.26966 1.38944 0.86293 0.78868 0.84380 0.77303 1.21626 1.21793 1.20469 1.20722 0.96080 0.88311 0.92372 1.22245 0.99295 0.93562 1.01990 1.20262 1.02234 0.99175 0.87121 1.22360 0.88967 0.91650 0.96869 1.77255 1.20378 1.24689 0.89169 1.45882 1.15279 1.44728 1.14741 0.71460 1.17933 0.84656 0.90452 0.88283 1.41497 1.24128 1.60087 1.13169 1.15163 0.99219 1.18409 0.94974 1.24396 0.91690 0.91844 0.93876 1.81319 1.11838 1.11875 1.07279 0.95197 0.94329 0.98340 0.93909 0.94466 0.93512 0.92022 0.92268 0.89717 0.89962 0.76435 0.74687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.19 8.98 59.84 0.54 4.73 16 2 N -0.60 -15.88 2.92 -181.12 -0.53 -16.40 16 3 C -0.25 -7.18 9.65 -15.06 -0.15 -7.32 16 4 H 0.07 1.91 7.86 -52.49 -0.41 1.50 16 5 C 0.00 0.00 5.10 -17.43 -0.09 -0.09 16 6 N -0.91 -27.52 10.71 55.49 0.59 -26.93 16 7 Si 0.90 22.83 29.57 -169.99 -5.03 17.81 16 8 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 9 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 C 0.15 3.22 5.64 -4.04 -0.02 3.20 16 12 C -0.13 -2.34 5.52 -26.73 -0.15 -2.49 16 13 C -0.05 -0.69 5.59 -27.88 -0.16 -0.84 16 14 C 0.17 2.38 6.51 -82.01 -0.53 1.85 16 15 N -0.29 -3.77 12.61 33.91 0.43 -3.34 16 16 N -0.49 -4.31 7.32 31.44 0.23 -4.08 16 17 H 0.44 2.14 8.96 -182.75 -1.64 0.50 16 18 C 0.42 3.85 8.44 -153.57 -1.30 2.55 16 19 N -0.84 -4.18 9.05 31.43 0.28 -3.90 16 20 C -0.26 -3.27 6.01 -106.40 -0.64 -3.91 16 21 C 0.30 4.34 15.22 -22.45 -0.34 4.00 16 22 N -0.45 -7.48 18.54 41.87 0.78 -6.70 16 23 H 0.03 0.82 7.34 -51.92 -0.38 0.44 16 24 H 0.04 1.06 7.34 -51.93 -0.38 0.67 16 25 H 0.00 -0.04 8.03 -51.93 -0.42 -0.46 16 26 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 28 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.08 1.15 7.98 -51.93 -0.41 0.73 16 33 H 0.41 0.68 8.95 -40.82 -0.37 0.32 16 34 H 0.42 2.04 8.68 -40.82 -0.35 1.68 16 LS Contribution 302.73 15.07 4.56 4.56 Total: -1.00 -35.21 302.73 -7.12 -42.33 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -5.60 Total: -5.01 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -2.83 Total: 1.66 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: 1.78 Total: -61.35 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.03 Total: 17.81 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -35.21 -7.12 -42.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119862643.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.476 kcal (2) G-P(sol) polarization free energy of solvation -35.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds