Wall clock time and date at job start Thu Apr 9 2020 12:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36934 * 120.00469 * 2 1 4 4 H 1.07996 * 119.99993 * 203.04642 * 3 2 1 5 5 C 1.38812 * 119.99538 * 23.04335 * 3 2 1 6 6 N 1.31616 * 120.00421 * 12.93442 * 5 3 2 7 7 Si 1.86806 * 119.99734 * 192.92816 * 5 3 2 8 8 H 1.48501 * 109.46935 * 90.00487 * 7 5 3 9 9 H 1.48504 * 109.47002 * 210.00282 * 7 5 3 10 10 H 1.48498 * 109.47147 * 330.00139 * 7 5 3 11 11 C 1.46504 * 119.99552 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46854 * 90.00335 * 11 2 1 13 13 C 1.53000 * 109.47113 * 179.97438 * 12 11 2 14 14 C 1.50707 * 109.47128 * 179.97438 * 13 12 11 15 15 N 1.30348 * 125.89628 * 269.99915 * 14 13 12 16 16 N 1.39904 * 109.20539 * 179.97438 * 15 14 13 17 17 H 0.97000 * 125.76317 * 180.25955 * 16 15 14 18 18 C 1.34937 * 108.47369 * 0.02562 * 16 15 14 19 19 N 1.38177 * 126.44169 * 180.02562 * 18 16 15 20 20 C 1.39227 * 107.11719 * 359.97438 * 18 16 15 21 21 C 1.43196 * 126.49957 * 179.97438 * 20 18 16 22 22 N 6.13201 * 146.69041 * 239.87931 * 2 1 3 23 23 H 1.09009 * 109.47466 * 275.12380 * 1 2 3 24 24 H 1.09004 * 109.47503 * 35.12062 * 1 2 3 25 25 H 1.08999 * 109.47801 * 155.12440 * 1 2 3 26 26 H 0.97001 * 120.00597 * 179.97438 * 6 5 3 27 27 H 1.08995 * 109.47393 * 330.00389 * 11 2 1 28 28 H 1.08999 * 109.47241 * 209.99685 * 11 2 1 29 29 H 1.09001 * 109.47672 * 59.99501 * 12 11 2 30 30 H 1.09001 * 109.47152 * 299.99530 * 12 11 2 31 31 H 1.09004 * 109.46956 * 60.00293 * 13 12 11 32 32 H 1.08999 * 109.47289 * 299.99538 * 13 12 11 33 33 H 0.97007 * 119.99994 * 359.97438 * 19 18 16 34 34 H 0.96997 * 120.00360 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1650 1.2231 -0.3661 5 6 1.5387 2.3400 0.4706 6 7 0.4119 2.2597 1.1458 7 14 2.3161 4.0073 0.1455 8 1 1.7989 4.5533 -1.1349 9 1 1.9761 4.9363 1.2531 10 1 3.7910 3.8576 0.0602 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7111 -1.4418 13 6 3.2178 -3.0358 -1.4412 14 6 3.4685 -3.4717 -2.8619 15 7 2.6813 -4.2211 -3.5816 16 7 3.2518 -4.4072 -4.8454 17 1 2.8662 -4.9224 -5.5712 18 6 4.4267 -3.7448 -4.8859 19 7 5.2956 -3.6796 -5.9583 20 6 4.5981 -3.1382 -3.6445 21 6 5.7083 -2.3307 -3.2372 22 7 6.5896 -1.6899 -2.9128 23 1 -0.3634 0.0918 1.0236 24 1 -0.3634 0.8406 -0.5912 25 1 -0.3635 -0.9323 -0.4323 26 1 -0.0149 3.0662 1.4750 27 1 1.6083 -2.0282 0.5146 28 1 3.1498 -1.1383 0.5143 29 1 3.0415 -0.9517 -1.9560 30 1 1.5000 -1.8416 -1.9556 31 1 2.6290 -3.7955 -0.9270 32 1 4.1703 -2.9049 -0.9276 33 1 5.0817 -4.1405 -6.7846 34 1 6.1196 -3.1731 -5.8849 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119862643.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:11 Heat of formation + Delta-G solvation = 89.330896 kcal Electronic energy + Delta-G solvation = -17340.060731 eV Core-core repulsion = 14501.976808 eV Total energy + Delta-G solvation = -2838.083923 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.128 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.32231 -37.92567 -37.31382 -36.26460 -34.85898 -33.14195 -31.50703 -29.89430 -27.98626 -27.49528 -24.19651 -23.61036 -21.93335 -21.08859 -19.83409 -18.68419 -18.37957 -17.13327 -16.89395 -16.25578 -16.16931 -15.71163 -15.33702 -14.83220 -14.62014 -14.13764 -14.04319 -13.97386 -13.48158 -13.35791 -13.01094 -12.74917 -12.58784 -12.32157 -12.26194 -12.06689 -12.03393 -11.79563 -11.60031 -11.27142 -10.62639 -10.15449 -8.90255 -8.72059 -7.79992 -5.28697 0.78035 1.15885 1.45283 1.45974 1.48856 1.55446 1.80121 2.51956 2.64906 2.79480 3.19681 3.32224 3.75588 3.89923 3.97097 4.29288 4.43499 4.56197 4.66906 4.82599 4.90254 4.96254 5.07382 5.29459 5.33855 5.40648 5.62016 5.66438 5.74730 5.77018 6.25916 6.36739 6.63839 6.78610 6.82126 7.19122 7.92730 8.35313 9.22720 Molecular weight = 249.13amu Principal moments of inertia in cm(-1) A = 0.026043 B = 0.004984 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.902194 B = 5616.859216 C = 6224.585993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.623 5.623 3 C -0.259 4.259 4 H 0.063 0.937 5 C -0.053 4.053 6 N -0.939 5.939 7 Si 0.963 3.037 8 H -0.286 1.286 9 H -0.291 1.291 10 H -0.273 1.273 11 C 0.148 3.852 12 C -0.109 4.109 13 C -0.040 4.040 14 C 0.161 3.839 15 N -0.310 5.310 16 N -0.476 5.476 17 H 0.460 0.540 18 C 0.451 3.549 19 N -0.816 5.816 20 C -0.291 4.291 21 C 0.315 3.685 22 N -0.495 5.495 23 H 0.005 0.995 24 H 0.011 0.989 25 H 0.034 0.966 26 H 0.248 0.752 27 H 0.058 0.942 28 H 0.040 0.960 29 H 0.035 0.965 30 H 0.054 0.946 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.426 0.574 34 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.715 -17.474 -16.465 24.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.347 5.347 3 C -0.389 4.389 4 H 0.081 0.919 5 C -0.248 4.248 6 N -0.586 5.586 7 Si 0.792 3.208 8 H -0.213 1.213 9 H -0.217 1.217 10 H -0.198 1.198 11 C 0.023 3.977 12 C -0.150 4.150 13 C -0.080 4.080 14 C -0.011 4.011 15 N -0.130 5.130 16 N -0.193 5.193 17 H 0.308 0.692 18 C 0.210 3.790 19 N -0.365 5.365 20 C -0.312 4.312 21 C 0.003 3.997 22 N -0.175 5.175 23 H 0.024 0.976 24 H 0.030 0.970 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.121 0.879 32 H 0.101 0.899 33 H 0.260 0.740 34 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 6.831 -17.051 -15.901 24.295 hybrid contribution 0.620 1.237 -0.772 1.584 sum 7.451 -15.815 -16.673 24.158 Atomic orbital electron populations 1.20527 0.82771 0.95898 0.97587 1.44177 1.02234 1.01871 1.86373 1.19457 0.98205 0.87105 1.34170 0.91932 1.25729 0.98710 1.01641 0.98673 1.70222 1.20814 1.27488 1.40055 0.85319 0.78264 0.80238 0.76991 1.21274 1.21701 1.19797 1.20929 0.95567 0.86805 0.94447 1.21881 0.99152 0.94908 0.99087 1.20077 1.01938 0.97432 0.88522 1.22148 0.89707 0.92604 0.96601 1.77153 1.20736 1.24567 0.90590 1.45756 1.14891 1.44472 1.14135 0.69150 1.17790 0.84645 0.88595 0.87966 1.41558 1.23188 1.59026 1.12750 1.15252 0.99013 1.20235 0.96741 1.24670 0.91327 0.91023 0.92701 1.81325 1.13558 1.13839 1.08766 0.97630 0.97026 0.94795 0.94276 0.92389 0.94105 0.94571 0.92700 0.87941 0.89926 0.74047 0.74146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.15 8.98 127.77 1.15 10.29 16 2 N -0.62 -32.93 2.92 -726.93 -2.12 -35.05 16 3 C -0.26 -15.07 9.65 84.03 0.81 -14.25 16 4 H 0.06 3.62 7.86 -2.91 -0.02 3.60 16 5 C -0.05 -3.10 5.10 84.86 0.43 -2.67 16 6 N -0.94 -57.73 10.71 21.65 0.23 -57.50 16 7 Si 0.96 47.43 29.57 68.60 2.03 49.46 16 8 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 9 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 10 H -0.27 -13.02 7.11 99.48 0.71 -12.32 16 11 C 0.15 6.18 5.64 86.38 0.49 6.67 16 12 C -0.11 -3.89 5.52 30.59 0.17 -3.72 16 13 C -0.04 -1.10 5.59 29.85 0.17 -0.93 16 14 C 0.16 4.17 6.51 43.56 0.28 4.45 16 15 N -0.31 -7.19 12.61 -46.64 -0.59 -7.78 16 16 N -0.48 -6.81 7.32 -54.45 -0.40 -7.21 16 17 H 0.46 2.73 8.96 -213.45 -1.91 0.81 16 18 C 0.45 6.87 8.44 132.59 1.12 7.99 16 19 N -0.82 -5.31 9.05 -54.47 -0.49 -5.80 16 20 C -0.29 -6.96 6.01 -21.01 -0.13 -7.09 16 21 C 0.32 9.09 15.22 88.32 1.34 10.44 16 22 N -0.50 -16.74 18.54 19.01 0.35 -16.39 16 23 H 0.01 0.30 7.34 -2.38 -0.02 0.29 16 24 H 0.01 0.62 7.34 -2.39 -0.02 0.60 16 25 H 0.03 1.47 8.03 -2.39 -0.02 1.45 16 26 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 27 H 0.06 2.17 8.07 -2.39 -0.02 2.15 16 28 H 0.04 1.73 8.04 -2.39 -0.02 1.71 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 32 H 0.08 2.25 7.98 -2.39 -0.02 2.23 16 33 H 0.43 -0.35 8.95 -92.70 -0.83 -1.18 16 34 H 0.43 2.84 8.68 -92.71 -0.80 2.04 16 Total: -1.00 -76.92 302.73 2.45 -74.47 By element: Atomic # 1 Polarization: -3.00 SS G_CDS: -2.39 Total: -5.39 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 5.84 Total: 11.19 kcal Atomic # 7 Polarization: -126.71 SS G_CDS: -3.02 Total: -129.73 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -76.92 2.45 -74.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119862643.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.797 kcal (2) G-P(sol) polarization free energy of solvation -76.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds