Wall clock time and date at job start Thu Apr 9 2020 12:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47285 * 2 1 4 4 C 1.46499 * 119.99687 * 264.90996 * 3 2 1 5 5 C 1.50708 * 109.47273 * 269.99876 * 4 3 2 6 6 H 1.08003 * 119.99263 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00394 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00342 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99706 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46898 * 90.00021 * 9 7 5 11 11 H 1.48498 * 109.46991 * 209.99679 * 9 7 5 12 12 H 1.48494 * 109.47312 * 329.99924 * 9 7 5 13 13 C 1.34775 * 120.00454 * 84.90903 * 3 2 1 14 14 O 1.21544 * 120.00315 * 185.47560 * 13 3 2 15 15 C 1.47831 * 119.99563 * 5.47561 * 13 3 2 16 16 C 1.39977 * 120.94205 * 54.93794 * 15 13 3 17 17 N 1.32129 * 118.92448 * 179.97438 * 16 15 13 18 18 C 1.31880 * 120.96539 * 359.97438 * 17 16 15 19 19 N 1.31854 * 122.10027 * 0.02562 * 18 17 16 20 20 C 1.32160 * 120.96439 * 359.97438 * 19 18 17 21 21 C 1.50700 * 120.53838 * 180.02562 * 20 19 18 22 22 H 1.08995 * 109.47571 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46883 * 300.00384 * 1 2 3 24 24 H 1.09003 * 109.46756 * 59.99758 * 1 2 3 25 25 H 1.09001 * 109.46883 * 239.99615 * 2 1 3 26 26 H 1.09003 * 109.46756 * 120.00242 * 2 1 3 27 27 H 1.08998 * 109.47485 * 29.99590 * 4 3 2 28 28 H 1.08999 * 109.47331 * 150.00378 * 4 3 2 29 29 H 0.96998 * 120.00083 * 180.02562 * 8 7 5 30 30 H 1.07999 * 120.53500 * 359.94783 * 16 15 13 31 31 H 1.08004 * 118.95261 * 180.02562 * 18 17 16 32 32 H 1.09002 * 109.47410 * 95.02533 * 21 20 19 33 33 H 1.08994 * 109.47169 * 215.03473 * 21 20 19 34 34 H 1.09011 * 109.46778 * 335.03392 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3687 2.0342 -1.2638 5 6 3.8231 1.7863 -1.5711 6 1 4.4260 1.2006 -0.8929 7 6 4.3840 2.3073 -2.7177 8 7 5.6530 2.0906 -2.9861 9 14 3.3412 3.3211 -3.8902 10 1 3.4112 4.7530 -3.5029 11 1 3.8521 3.1573 -5.2748 12 1 1.9315 2.8589 -3.8247 13 6 2.1454 2.0511 1.1625 14 8 2.4547 3.2265 1.1560 15 6 1.9086 1.3562 2.4457 16 6 2.6040 0.1853 2.7691 17 7 2.3614 -0.4028 3.9271 18 6 1.4805 0.0980 4.7712 19 7 0.8037 1.1982 4.5067 20 6 0.9836 1.8510 3.3717 21 6 0.2052 3.1079 3.0796 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.7534 1.6269 -2.0660 28 1 2.1928 3.1066 -1.1796 29 1 6.0477 2.4575 -3.7927 30 1 3.3269 -0.2308 2.0830 31 1 1.3080 -0.4091 5.7090 32 1 0.7967 3.9769 3.3679 33 1 -0.0181 3.1575 2.0139 34 1 -0.7262 3.0983 3.6459 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121560899.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:13 Heat of formation + Delta-G solvation = -5.924642 kcal Electronic energy + Delta-G solvation = -18375.084556 eV Core-core repulsion = 15500.577292 eV Total energy + Delta-G solvation = -2874.507264 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.42937 -40.44738 -37.20297 -35.50070 -34.96002 -33.73763 -31.91922 -30.22711 -29.23000 -26.44933 -24.73284 -24.12908 -23.80449 -20.59270 -19.19953 -18.92396 -18.17406 -17.88400 -17.50013 -16.40765 -15.96617 -15.74042 -15.11659 -15.01683 -14.65528 -14.43373 -14.17629 -14.05261 -13.88241 -13.46274 -13.32966 -13.23881 -12.85250 -12.54210 -12.46302 -12.10039 -12.05143 -11.74367 -11.59208 -10.92798 -10.83351 -10.59668 -10.43690 -9.53380 -8.33839 -6.39731 -0.50282 -0.15685 1.34458 1.38190 1.46188 1.58546 2.07941 2.31401 2.58945 2.92152 3.00513 3.07810 3.25450 3.39450 3.83262 4.00836 4.24155 4.28737 4.38063 4.50114 4.55832 4.72256 4.75084 4.83489 4.86674 4.93321 4.94999 5.24062 5.26615 5.43685 5.53050 5.74746 6.20743 6.49742 6.62130 6.89680 7.10074 7.27092 8.82662 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.031159 B = 0.006471 C = 0.006331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.387792 B = 4325.814242 C = 4421.659695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.094 3.906 3 N -0.587 5.587 4 C 0.225 3.775 5 C -0.539 4.539 6 H 0.033 0.967 7 C 0.014 3.986 8 N -0.943 5.943 9 Si 0.944 3.056 10 H -0.276 1.276 11 H -0.277 1.277 12 H -0.236 1.236 13 C 0.563 3.437 14 O -0.571 6.571 15 C -0.237 4.237 16 C 0.185 3.815 17 N -0.530 5.530 18 C 0.310 3.690 19 N -0.526 5.526 20 C 0.217 3.783 21 C -0.104 4.104 22 H 0.091 0.909 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.026 0.974 29 H 0.269 0.731 30 H 0.176 0.824 31 H 0.241 0.759 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.288 -5.291 10.775 18.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.028 4.028 3 N -0.316 5.316 4 C 0.103 3.897 5 C -0.578 4.578 6 H 0.051 0.949 7 C -0.184 4.184 8 N -0.583 5.583 9 Si 0.767 3.233 10 H -0.201 1.201 11 H -0.202 1.202 12 H -0.159 1.159 13 C 0.349 3.651 14 O -0.451 6.451 15 C -0.245 4.245 16 C 0.019 3.981 17 N -0.244 5.244 18 C 0.024 3.976 19 N -0.240 5.240 20 C 0.070 3.930 21 C -0.161 4.161 22 H 0.110 0.890 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.106 0.894 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.078 0.922 30 H 0.193 0.807 31 H 0.257 0.743 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.169 -5.145 11.482 18.949 hybrid contribution 0.750 0.882 -1.538 1.925 sum -13.419 -4.263 9.944 17.237 Atomic orbital electron populations 1.22122 0.93993 1.03563 1.01922 1.21891 0.95659 0.81349 1.03930 1.47950 1.62546 1.14931 1.06203 1.19423 0.94367 0.93840 0.82055 1.21542 0.95379 1.33769 1.07079 0.94865 1.25804 0.96116 0.96875 0.99638 1.70038 1.13892 1.46918 1.27470 0.85765 0.80560 0.79096 0.77874 1.20120 1.20211 1.15891 1.18133 0.77130 0.85970 0.83876 1.90736 1.49478 1.17383 1.87548 1.21560 1.04384 1.00392 0.98168 1.23517 0.93538 0.88140 0.92942 1.68561 1.18461 1.33816 1.03526 1.25982 0.84907 0.87976 0.98728 1.68445 1.27014 1.09797 1.18762 1.22030 0.89535 0.94476 0.86961 1.20848 1.00461 0.91839 1.02979 0.88981 0.93433 0.92218 0.89382 0.90152 0.92781 0.95628 0.92242 0.80700 0.74321 0.89140 0.90970 0.87409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 10.20 71.98 0.73 -2.91 16 2 C 0.09 2.77 5.91 86.38 0.51 3.28 16 3 N -0.59 -23.06 2.47 -829.59 -2.05 -25.11 16 4 C 0.22 10.49 4.25 85.64 0.36 10.85 16 5 C -0.54 -30.63 9.94 25.60 0.25 -30.38 16 6 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16 7 C 0.01 0.81 5.47 84.65 0.46 1.27 16 8 N -0.94 -58.46 13.96 21.44 0.30 -58.16 16 9 Si 0.94 43.08 27.47 68.60 1.88 44.96 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.24 -9.55 6.54 99.48 0.65 -8.90 16 13 C 0.56 22.60 6.17 86.78 0.54 23.14 16 14 O -0.57 -27.60 15.90 -3.85 -0.06 -27.66 16 15 C -0.24 -7.60 4.89 -19.91 -0.10 -7.70 16 16 C 0.18 5.32 8.94 85.07 0.76 6.08 16 17 N -0.53 -13.42 10.42 -198.97 -2.07 -15.49 16 18 C 0.31 6.60 12.27 180.84 2.22 8.81 16 19 N -0.53 -12.95 10.36 -187.06 -1.94 -14.89 16 20 C 0.22 6.08 6.86 42.92 0.29 6.38 16 21 C -0.10 -2.58 9.29 71.24 0.66 -1.92 16 22 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.05 1.11 8.05 -2.39 -0.02 1.09 16 24 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.09 2.65 8.03 -2.39 -0.02 2.63 16 26 H 0.08 2.13 4.55 -2.39 -0.01 2.12 16 27 H 0.05 2.30 7.13 -2.39 -0.02 2.28 16 28 H 0.03 1.28 6.78 -2.39 -0.02 1.26 16 29 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 30 H 0.18 4.94 7.38 -2.91 -0.02 4.92 16 31 H 0.24 2.81 8.06 -2.91 -0.02 2.79 16 32 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.07 1.93 7.29 -2.39 -0.02 1.92 16 34 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -72.47 291.74 3.81 -68.66 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 1.05 Total: 10.78 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 6.70 Total: 16.91 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -5.76 Total: -113.65 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.06 Total: -27.66 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.88 Total: 44.96 kcal Total: -72.47 3.81 -68.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121560899.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.734 kcal (2) G-P(sol) polarization free energy of solvation -72.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds