Wall clock time and date at job start Thu Apr 9 2020 12:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.47113 * 2 1 4 4 C 1.36919 * 120.00130 * 267.05396 * 3 2 1 5 5 H 1.07998 * 119.99847 * 143.09870 * 4 3 2 6 6 C 1.39021 * 119.99568 * 323.09507 * 4 3 2 7 7 N 1.31378 * 119.99568 * 157.83869 * 6 4 3 8 8 Si 1.86802 * 120.00415 * 337.83813 * 6 4 3 9 9 H 1.48499 * 109.47154 * 95.42488 * 8 6 4 10 10 H 1.48496 * 109.47177 * 215.42684 * 8 6 4 11 11 H 1.48504 * 109.46632 * 335.42680 * 8 6 4 12 12 C 1.34781 * 119.99938 * 87.04863 * 3 2 1 13 13 O 1.21602 * 119.99913 * 174.58166 * 12 3 2 14 14 C 1.47606 * 119.99782 * 354.58416 * 12 3 2 15 15 N 1.31896 * 126.58202 * 356.49847 * 14 12 3 16 16 N 1.28452 * 110.05170 * 179.82424 * 15 14 12 17 17 H 0.96996 * 124.88240 * 180.22166 * 16 15 14 18 18 C 1.35274 * 110.24369 * 0.47145 * 16 15 14 19 19 C 1.35044 * 107.08398 * 359.70250 * 18 16 15 20 20 C 1.50945 * 110.53022 * 180.02562 * 19 18 16 21 21 C 1.54518 * 104.96574 * 16.76923 * 20 19 18 22 22 C 1.51238 * 142.76141 * 179.73032 * 18 16 15 23 23 H 1.08997 * 109.47267 * 57.66954 * 1 2 3 24 24 H 1.09003 * 109.46896 * 177.67301 * 1 2 3 25 25 H 1.09002 * 109.47073 * 297.66808 * 1 2 3 26 26 H 1.08997 * 109.47344 * 120.00700 * 2 1 3 27 27 H 1.09001 * 109.46731 * 240.00598 * 2 1 3 28 28 H 0.97001 * 120.00127 * 180.02562 * 7 6 4 29 29 H 1.08999 * 110.33945 * 135.64634 * 20 19 18 30 30 H 1.09005 * 110.33766 * 257.79772 * 20 19 18 31 31 H 1.09002 * 110.92403 * 92.68673 * 21 20 19 32 32 H 1.08997 * 110.92963 * 216.31483 * 21 20 19 33 33 H 1.09002 * 110.32475 * 44.25072 * 22 18 16 34 34 H 1.09002 * 110.41092 * 282.07836 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3040 2.0063 -1.1842 5 1 2.0857 3.0569 -1.3065 6 6 2.8752 1.2886 -2.2289 7 7 2.7577 1.7207 -3.4640 8 14 3.8097 -0.2900 -1.8766 9 1 2.9031 -1.4524 -2.0556 10 1 4.9554 -0.4067 -2.8141 11 1 4.3135 -0.2656 -0.4798 12 6 2.1863 2.0365 1.1657 13 8 2.6838 3.1461 1.1732 14 6 1.7664 1.4074 2.4332 15 7 1.1584 0.2450 2.5702 16 7 0.9440 0.0039 3.8135 17 1 0.5121 -0.7936 4.1575 18 6 1.4022 1.0245 4.5740 19 6 1.9334 1.9382 3.7334 20 6 2.4722 3.1179 4.5057 21 6 2.5883 2.6207 5.9641 22 6 1.5291 1.4972 6.0050 23 1 -0.3633 0.5496 -0.8683 24 1 -0.3633 -1.0269 -0.0417 25 1 -0.3633 0.4772 0.9102 26 1 1.8934 -0.5139 0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 3.1558 1.2199 -4.1930 29 1 3.4519 3.4051 4.1240 30 1 1.7810 3.9586 4.4442 31 1 3.5841 2.2240 6.1620 32 1 2.3410 3.4159 6.6674 33 1 1.8662 0.6815 6.6447 34 1 0.5764 1.8885 6.3620 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124150509.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:15 Heat of formation + Delta-G solvation = 70.477855 kcal Electronic energy + Delta-G solvation = -18615.567857 eV Core-core repulsion = 15744.373654 eV Total energy + Delta-G solvation = -2871.194203 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.48750 -38.37489 -36.64819 -35.01201 -32.34346 -31.28201 -29.55287 -28.48186 -27.49731 -25.42056 -22.94314 -22.35558 -21.47660 -19.68560 -18.55352 -17.35369 -16.76895 -15.99168 -15.70002 -15.51482 -14.57348 -13.80801 -13.62193 -13.33162 -13.20643 -12.73688 -12.54318 -12.45363 -12.27753 -11.84702 -11.51974 -11.36490 -11.09895 -11.06602 -10.90107 -10.63208 -10.27093 -9.89270 -9.72370 -9.07060 -8.76901 -8.57105 -8.30521 -7.66606 -6.37130 -3.88760 2.10336 2.52712 2.96797 3.11939 3.28248 3.35524 4.19828 4.30779 4.37691 4.60922 4.69781 4.97042 5.01519 5.15412 5.34604 5.53254 5.55791 5.74559 5.85486 5.90248 5.99286 6.19298 6.21105 6.27296 6.28540 6.40293 6.53160 6.72169 6.79066 7.00965 7.35330 7.61860 8.25203 8.34310 8.63108 9.01660 9.36630 9.87812 10.74347 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.033701 B = 0.007286 C = 0.006709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.639274 B = 3842.020239 C = 4172.700035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.089 3.911 3 N -0.446 5.446 4 C -0.309 4.309 5 H 0.107 0.893 6 C 0.062 3.938 7 N -0.859 5.859 8 Si 0.878 3.122 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.264 1.264 12 C 0.531 3.469 13 O -0.559 6.559 14 C 0.037 3.963 15 N -0.259 5.259 16 N -0.381 5.381 17 H 0.436 0.564 18 C -0.036 4.036 19 C -0.166 4.166 20 C -0.045 4.045 21 C -0.116 4.116 22 C -0.032 4.032 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.274 0.726 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.654 -5.499 17.489 18.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.034 4.034 3 N -0.166 5.166 4 C -0.436 4.436 5 H 0.125 0.875 6 C -0.144 4.144 7 N -0.495 5.495 8 Si 0.705 3.295 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.188 1.188 12 C 0.319 3.681 13 O -0.439 6.439 14 C -0.123 4.123 15 N -0.093 5.093 16 N -0.092 5.092 17 H 0.279 0.721 18 C -0.163 4.163 19 C -0.177 4.177 20 C -0.084 4.084 21 C -0.154 4.154 22 C -0.071 4.071 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.757 -5.821 16.610 17.997 hybrid contribution 0.431 -0.909 0.485 1.117 sum -3.325 -6.730 17.095 18.670 Atomic orbital electron populations 1.21955 0.96207 1.00468 1.02037 1.21917 0.95081 0.85058 1.01384 1.43673 1.55814 1.11928 1.05195 1.19078 1.40239 0.97819 0.86514 0.87531 1.25361 0.96079 0.98283 0.94708 1.69742 1.41015 1.40151 0.98582 0.86937 0.80135 0.83040 0.79346 1.20136 1.21407 1.18791 1.16950 0.83171 0.86981 0.81031 1.90642 1.47443 1.20267 1.85592 1.22010 1.02719 0.92403 0.95203 1.74094 1.19218 1.18093 0.97936 1.42737 1.45701 1.17492 1.03220 0.72111 1.22086 1.04984 0.91587 0.97599 1.20820 1.06258 0.98949 0.91626 1.20340 1.01856 0.94533 0.91634 1.22430 0.98643 0.97184 0.97114 1.20538 1.00273 0.97965 0.88297 0.92361 0.93297 0.92566 0.90233 0.91881 0.91539 0.90319 0.90496 0.90776 0.90152 0.90980 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.74 37.16 0.36 -2.56 16 2 C 0.09 2.02 4.37 -4.04 -0.02 2.00 16 3 N -0.45 -11.80 2.19 -115.97 -0.25 -12.05 16 4 C -0.31 -9.14 9.34 -14.99 -0.14 -9.28 16 5 H 0.11 3.48 7.95 -52.49 -0.42 3.06 16 6 C 0.06 1.78 5.29 -17.46 -0.09 1.69 16 7 N -0.86 -25.29 13.95 55.50 0.77 -24.51 16 8 Si 0.88 21.67 25.00 -169.99 -4.25 17.42 16 9 H -0.27 -6.32 6.67 56.52 0.38 -5.95 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.26 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.53 13.91 7.61 -12.44 -0.09 13.81 16 13 O -0.56 -16.22 16.83 5.28 0.09 -16.13 16 14 C 0.04 0.80 6.66 -82.81 -0.55 0.25 16 15 N -0.26 -4.73 7.17 33.39 0.24 -4.49 16 16 N -0.38 -5.27 6.84 33.62 0.23 -5.04 16 17 H 0.44 4.07 8.96 -190.45 -1.71 2.37 16 18 C -0.04 -0.50 8.12 -81.95 -0.67 -1.17 16 19 C -0.17 -2.99 6.82 -104.43 -0.71 -3.70 16 20 C -0.05 -0.67 6.78 -26.97 -0.18 -0.85 16 21 C -0.12 -1.15 7.13 -25.16 -0.18 -1.33 16 22 C -0.03 -0.30 6.78 -26.85 -0.18 -0.48 16 23 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.06 1.09 6.55 -51.93 -0.34 0.75 16 26 H 0.08 1.70 5.68 -51.93 -0.30 1.40 16 27 H 0.06 1.48 3.31 -51.93 -0.17 1.31 16 28 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 277.43 15.07 4.18 4.18 Total: -1.00 -34.59 277.43 -6.92 -41.51 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -5.47 Total: 0.73 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -2.46 Total: -1.61 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.99 Total: -46.09 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.09 Total: -16.13 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.25 Total: 17.42 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -34.59 -6.92 -41.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124150509.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.984 kcal (2) G-P(sol) polarization free energy of solvation -34.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds