Wall clock time and date at job start Thu Apr 9 2020 12:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.47113 * 2 1 4 4 C 1.36919 * 120.00130 * 267.05396 * 3 2 1 5 5 H 1.07998 * 119.99847 * 143.09870 * 4 3 2 6 6 C 1.39021 * 119.99568 * 323.09507 * 4 3 2 7 7 N 1.31378 * 119.99568 * 157.83869 * 6 4 3 8 8 Si 1.86802 * 120.00415 * 337.83813 * 6 4 3 9 9 H 1.48499 * 109.47154 * 95.42488 * 8 6 4 10 10 H 1.48496 * 109.47177 * 215.42684 * 8 6 4 11 11 H 1.48504 * 109.46632 * 335.42680 * 8 6 4 12 12 C 1.34781 * 119.99938 * 87.04863 * 3 2 1 13 13 O 1.21602 * 119.99913 * 174.58166 * 12 3 2 14 14 C 1.47606 * 119.99782 * 354.58416 * 12 3 2 15 15 N 1.31896 * 126.58202 * 356.49847 * 14 12 3 16 16 N 1.28452 * 110.05170 * 179.82424 * 15 14 12 17 17 H 0.96996 * 124.88240 * 180.22166 * 16 15 14 18 18 C 1.35274 * 110.24369 * 0.47145 * 16 15 14 19 19 C 1.35044 * 107.08398 * 359.70250 * 18 16 15 20 20 C 1.50945 * 110.53022 * 180.02562 * 19 18 16 21 21 C 1.54518 * 104.96574 * 16.76923 * 20 19 18 22 22 C 1.51238 * 142.76141 * 179.73032 * 18 16 15 23 23 H 1.08997 * 109.47267 * 57.66954 * 1 2 3 24 24 H 1.09003 * 109.46896 * 177.67301 * 1 2 3 25 25 H 1.09002 * 109.47073 * 297.66808 * 1 2 3 26 26 H 1.08997 * 109.47344 * 120.00700 * 2 1 3 27 27 H 1.09001 * 109.46731 * 240.00598 * 2 1 3 28 28 H 0.97001 * 120.00127 * 180.02562 * 7 6 4 29 29 H 1.08999 * 110.33945 * 135.64634 * 20 19 18 30 30 H 1.09005 * 110.33766 * 257.79772 * 20 19 18 31 31 H 1.09002 * 110.92403 * 92.68673 * 21 20 19 32 32 H 1.08997 * 110.92963 * 216.31483 * 21 20 19 33 33 H 1.09002 * 110.32475 * 44.25072 * 22 18 16 34 34 H 1.09002 * 110.41092 * 282.07836 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3040 2.0063 -1.1842 5 1 2.0857 3.0569 -1.3065 6 6 2.8752 1.2886 -2.2289 7 7 2.7577 1.7207 -3.4640 8 14 3.8097 -0.2900 -1.8766 9 1 2.9031 -1.4524 -2.0556 10 1 4.9554 -0.4067 -2.8141 11 1 4.3135 -0.2656 -0.4798 12 6 2.1863 2.0365 1.1657 13 8 2.6838 3.1461 1.1732 14 6 1.7664 1.4074 2.4332 15 7 1.1584 0.2450 2.5702 16 7 0.9440 0.0039 3.8135 17 1 0.5121 -0.7936 4.1575 18 6 1.4022 1.0245 4.5740 19 6 1.9334 1.9382 3.7334 20 6 2.4722 3.1179 4.5057 21 6 2.5883 2.6207 5.9641 22 6 1.5291 1.4972 6.0050 23 1 -0.3633 0.5496 -0.8683 24 1 -0.3633 -1.0269 -0.0417 25 1 -0.3633 0.4772 0.9102 26 1 1.8934 -0.5139 0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 3.1558 1.2199 -4.1930 29 1 3.4519 3.4051 4.1240 30 1 1.7810 3.9586 4.4442 31 1 3.5841 2.2240 6.1620 32 1 2.3410 3.4159 6.6674 33 1 1.8662 0.6815 6.6447 34 1 0.5764 1.8885 6.3620 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124150509.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:14 Heat of formation + Delta-G solvation = 45.164548 kcal Electronic energy + Delta-G solvation = -18616.665524 eV Core-core repulsion = 15744.373654 eV Total energy + Delta-G solvation = -2872.291871 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.79646 -40.35980 -37.73027 -37.01289 -34.44737 -32.74602 -31.38264 -29.63267 -28.58144 -27.38543 -24.72439 -24.05450 -22.48582 -20.98658 -20.29870 -18.87884 -18.58904 -17.55123 -17.42373 -17.10829 -15.94351 -15.67595 -15.39890 -15.00805 -14.53393 -14.39993 -14.21145 -13.80970 -13.57176 -13.54191 -13.08587 -12.80966 -12.65084 -12.60601 -12.01448 -11.99332 -11.93763 -11.71262 -11.38533 -11.15866 -10.63104 -10.20261 -9.79399 -9.49619 -8.58444 -6.17117 0.62670 1.12790 1.18008 1.30036 1.38914 1.85823 2.12492 2.40879 2.65064 2.96254 3.34747 3.71524 3.77752 4.09882 4.21104 4.26065 4.33570 4.46736 4.57427 4.72328 4.85514 4.88713 4.96825 5.05085 5.05994 5.15010 5.20887 5.34737 5.41141 5.48528 5.52967 5.97007 6.25716 6.52752 6.83244 6.98088 7.21687 7.80134 8.58375 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.033701 B = 0.007286 C = 0.006709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.639274 B = 3842.020239 C = 4172.700035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.087 3.913 3 N -0.459 5.459 4 C -0.334 4.334 5 H 0.050 0.950 6 C 0.021 3.979 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.237 1.237 10 H -0.278 1.278 11 H -0.272 1.272 12 C 0.525 3.475 13 O -0.608 6.608 14 C -0.009 4.009 15 N -0.260 5.260 16 N -0.352 5.352 17 H 0.461 0.539 18 C -0.001 4.001 19 C -0.210 4.210 20 C -0.054 4.054 21 C -0.103 4.103 22 C -0.025 4.025 23 H 0.034 0.966 24 H 0.090 0.910 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.057 0.943 28 H 0.283 0.717 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.335 -8.814 21.173 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.035 4.035 3 N -0.179 5.179 4 C -0.463 4.463 5 H 0.068 0.932 6 C -0.183 4.183 7 N -0.535 5.535 8 Si 0.769 3.231 9 H -0.162 1.162 10 H -0.204 1.204 11 H -0.197 1.197 12 C 0.314 3.686 13 O -0.492 6.492 14 C -0.167 4.167 15 N -0.096 5.096 16 N -0.067 5.067 17 H 0.309 0.691 18 C -0.129 4.129 19 C -0.220 4.220 20 C -0.093 4.093 21 C -0.140 4.140 22 C -0.064 4.064 23 H 0.053 0.947 24 H 0.108 0.892 25 H 0.075 0.925 26 H 0.115 0.885 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.474 -9.178 20.281 22.706 hybrid contribution 0.573 0.201 -0.555 0.823 sum -3.900 -8.977 19.725 22.020 Atomic orbital electron populations 1.21874 0.94077 1.02675 1.00998 1.22106 0.96900 0.82723 1.01750 1.43788 1.56488 1.13373 1.04253 1.18687 1.42585 0.96124 0.88855 0.93248 1.26072 0.96004 1.02273 0.93933 1.69826 1.41805 1.42309 0.99586 0.85885 0.79123 0.79560 0.78567 1.16225 1.20437 1.19683 1.17691 0.81855 0.86399 0.82646 1.90577 1.49320 1.22427 1.86837 1.21379 1.06518 0.94690 0.94137 1.73881 1.18769 1.16762 1.00212 1.42810 1.43726 1.18117 1.02036 0.69131 1.22781 1.01478 0.89429 0.99217 1.21292 1.08168 1.01558 0.90994 1.20508 1.00003 0.93949 0.94826 1.22457 0.99622 0.98261 0.93686 1.20807 1.01528 0.98702 0.85322 0.94695 0.89161 0.92451 0.88454 0.92545 0.90670 0.93133 0.91034 0.90000 0.87049 0.87223 0.87284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.30 9.74 71.98 0.70 -4.60 16 2 C 0.09 3.92 4.37 86.38 0.38 4.29 16 3 N -0.46 -25.38 2.19 -639.06 -1.40 -26.78 16 4 C -0.33 -21.19 9.34 84.09 0.79 -20.41 16 5 H 0.05 3.59 7.95 -2.91 -0.02 3.56 16 6 C 0.02 1.24 5.29 84.95 0.45 1.69 16 7 N -0.90 -55.03 13.95 21.68 0.30 -54.73 16 8 Si 0.95 45.09 25.00 68.60 1.72 46.80 16 9 H -0.24 -9.92 6.67 99.48 0.66 -9.26 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 12 C 0.52 29.02 7.61 86.72 0.66 29.68 16 13 O -0.61 -38.20 16.83 -4.04 -0.07 -38.27 16 14 C -0.01 -0.39 6.66 42.39 0.28 -0.11 16 15 N -0.26 -8.96 7.17 -48.26 -0.35 -9.31 16 16 N -0.35 -8.34 6.84 -47.55 -0.33 -8.67 16 17 H 0.46 6.17 8.96 -220.01 -1.97 4.20 16 18 C 0.00 -0.02 8.12 41.46 0.34 0.32 16 19 C -0.21 -7.37 6.82 -19.74 -0.13 -7.50 16 20 C -0.05 -1.58 6.78 30.44 0.21 -1.37 16 21 C -0.10 -1.62 7.13 31.61 0.23 -1.39 16 22 C -0.02 -0.33 6.78 30.52 0.21 -0.12 16 23 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 25 H 0.06 2.17 6.55 -2.39 -0.02 2.15 16 26 H 0.10 3.99 5.68 -2.39 -0.01 3.98 16 27 H 0.06 2.57 3.31 -2.39 -0.01 2.56 16 28 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -84.13 277.43 3.10 -81.04 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -0.88 Total: 9.43 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 4.10 Total: 0.48 kcal Atomic # 7 Polarization: -97.71 SS G_CDS: -1.77 Total: -99.48 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -0.07 Total: -38.27 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.72 Total: 46.80 kcal Total: -84.13 3.10 -81.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124150509.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.202 kcal (2) G-P(sol) polarization free energy of solvation -84.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds