Wall clock time and date at job start Thu Apr 9 2020 12:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 119.99835 * 2 1 4 4 C 1.50706 * 109.47105 * 89.99642 * 3 2 1 5 5 H 1.08000 * 119.99488 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00020 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99614 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 120.00107 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.46973 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47072 * 119.99643 * 8 6 4 11 11 H 1.48497 * 109.47239 * 240.00337 * 8 6 4 12 12 C 1.34771 * 120.00413 * 179.97438 * 2 1 3 13 13 O 1.21567 * 120.00432 * 185.32791 * 12 2 1 14 14 C 1.47720 * 119.99762 * 5.33428 * 12 2 1 15 15 N 1.31839 * 126.57117 * 5.43118 * 14 12 2 16 16 N 1.28459 * 110.05968 * 179.82123 * 15 14 12 17 17 H 0.97003 * 124.88689 * 180.22277 * 16 15 14 18 18 C 1.35250 * 110.22799 * 0.46135 * 16 15 14 19 19 C 1.35047 * 107.07836 * 359.71128 * 18 16 15 20 20 C 1.50945 * 110.52932 * 180.02562 * 19 18 16 21 21 C 1.54517 * 104.96624 * 16.77078 * 20 19 18 22 22 C 1.51235 * 142.76825 * 179.71105 * 18 16 15 23 23 H 1.09004 * 109.47153 * 95.28702 * 1 2 3 24 24 H 1.09003 * 109.47654 * 215.28372 * 1 2 3 25 25 H 1.08994 * 109.47856 * 335.29061 * 1 2 3 26 26 H 1.08993 * 109.46900 * 209.99664 * 3 2 1 27 27 H 1.08998 * 109.46807 * 330.00121 * 3 2 1 28 28 H 0.96998 * 119.99594 * 179.97438 * 7 6 4 29 29 H 1.09002 * 110.34530 * 135.63839 * 20 19 18 30 30 H 1.08996 * 110.34218 * 257.79096 * 20 19 18 31 31 H 1.08998 * 110.93509 * 92.68284 * 21 20 19 32 32 H 1.09001 * 110.92620 * 216.31763 * 21 20 19 33 33 H 1.09005 * 110.32841 * 44.26901 * 22 18 16 34 34 H 1.09003 * 110.41572 * 282.10004 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 1.4209 5 1 2.0972 1.0963 2.2417 6 6 3.1258 2.8781 1.6728 7 7 3.5522 3.6187 0.6732 8 14 3.4364 3.4178 3.4339 9 1 2.8595 2.4171 4.3674 10 1 4.8988 3.5265 3.6677 11 1 2.7982 4.7383 3.6669 12 6 2.1389 -1.1671 0.0005 13 8 3.3506 -1.1693 0.0983 14 6 1.4051 -2.4437 -0.1178 15 7 0.1121 -2.5898 -0.3298 16 7 -0.1877 -3.8379 -0.3808 17 1 -1.0797 -4.1885 -0.5305 18 6 0.9183 -4.5927 -0.1905 19 6 1.9538 -3.7429 -0.0195 20 6 3.2361 -4.5084 0.1999 21 6 2.9311 -5.9444 -0.2821 22 6 1.3988 -6.0240 -0.1027 23 1 -0.3634 -0.0947 -1.0233 24 1 -0.3634 -0.8389 0.5936 25 1 -0.3634 0.9335 0.4295 26 1 3.1498 1.1384 -0.5138 27 1 1.6083 2.0284 -0.5138 28 1 4.0284 4.4450 0.8504 29 1 4.0427 -4.0739 -0.3906 30 1 3.5001 -4.5101 1.2574 31 1 3.2074 -6.0708 -1.3289 32 1 3.4357 -6.6806 0.3435 33 1 0.9547 -6.6220 -0.8985 34 1 1.1534 -6.4484 0.8708 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126717380.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:16 Heat of formation + Delta-G solvation = 54.922097 kcal Electronic energy + Delta-G solvation = -18023.117008 eV Core-core repulsion = 15151.248256 eV Total energy + Delta-G solvation = -2871.868752 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.70035 -38.45977 -36.79412 -34.65382 -32.61083 -31.57869 -28.71784 -27.96368 -27.30206 -25.76478 -23.91921 -21.99849 -21.43266 -19.82989 -18.26823 -17.46907 -16.47896 -16.15020 -15.88105 -15.08042 -14.80784 -14.17545 -13.85155 -13.36945 -13.02241 -12.83114 -12.63731 -12.19001 -12.02683 -11.78829 -11.68700 -11.21163 -11.18238 -11.10489 -10.83290 -10.53713 -10.32993 -10.05615 -9.54290 -9.07714 -9.03050 -8.49559 -8.36672 -7.51038 -5.97006 -4.01017 1.89831 2.32198 2.77109 3.35328 3.42386 3.47614 3.97376 4.12890 4.35196 4.52361 4.57041 4.82979 4.89519 5.17872 5.32577 5.37970 5.43669 5.63590 5.75446 5.84003 6.01453 6.08333 6.17300 6.24328 6.25376 6.46804 6.61126 7.07697 7.22260 7.50718 7.64770 7.98735 8.05316 8.31113 8.52326 8.98069 9.17755 9.63603 11.11135 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.034275 B = 0.005490 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.720473 B = 5098.771245 C = 5462.362040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.588 5.588 3 C 0.245 3.755 4 C -0.522 4.522 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.284 1.284 12 C 0.583 3.417 13 O -0.530 6.530 14 C 0.025 3.975 15 N -0.252 5.252 16 N -0.375 5.375 17 H 0.439 0.561 18 C -0.032 4.032 19 C -0.162 4.162 20 C -0.048 4.048 21 C -0.115 4.115 22 C -0.033 4.033 23 H 0.044 0.956 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.035 0.965 28 H 0.262 0.738 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.766 -19.051 -2.651 20.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.320 5.320 3 C 0.126 3.874 4 C -0.561 4.561 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.210 1.210 12 C 0.367 3.633 13 O -0.405 6.405 14 C -0.136 4.136 15 N -0.087 5.087 16 N -0.086 5.086 17 H 0.282 0.718 18 C -0.159 4.159 19 C -0.172 4.172 20 C -0.086 4.086 21 C -0.153 4.153 22 C -0.072 4.072 23 H 0.062 0.938 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.969 -18.186 -2.800 20.051 hybrid contribution 0.099 -0.096 0.990 0.999 sum -7.869 -18.282 -1.811 19.986 Atomic orbital electron populations 1.21741 0.80605 1.02338 1.00671 1.48038 1.06767 1.07219 1.69937 1.19351 0.92494 0.77888 0.97640 1.21484 1.36146 1.06119 0.92309 0.92363 1.24932 0.95422 0.96384 0.97424 1.69948 1.38685 1.14321 1.30612 0.86434 0.78038 0.78225 0.84679 1.19825 1.20870 1.21019 1.16937 0.86384 0.81525 0.78425 1.90754 1.12990 1.86220 1.50557 1.21859 0.89399 0.94886 1.07412 1.74019 1.16084 0.98080 1.20500 1.42725 1.09611 1.02888 1.53422 0.71790 1.22124 0.87734 0.97774 1.08282 1.20855 0.97283 0.91335 1.07711 1.20390 0.94138 0.92074 1.02047 1.22434 0.93583 0.97136 1.02176 1.20574 0.95998 0.88120 1.02505 0.93752 0.91274 0.91309 0.93816 0.94721 0.92834 0.90056 0.90300 0.90633 0.89986 0.90771 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.72 9.32 59.84 0.56 2.28 16 2 N -0.59 -14.01 2.86 -184.13 -0.53 -14.53 16 3 C 0.25 6.79 5.10 -5.19 -0.03 6.76 16 4 C -0.52 -15.46 9.39 -34.44 -0.32 -15.79 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 8 Si 0.90 22.50 29.54 -169.99 -5.02 17.48 16 9 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 C 0.58 13.93 7.66 -12.39 -0.09 13.83 16 13 O -0.53 -14.43 16.57 5.31 0.09 -14.34 16 14 C 0.03 0.49 6.76 -82.80 -0.56 -0.07 16 15 N -0.25 -4.09 9.00 33.40 0.30 -3.79 16 16 N -0.37 -4.55 6.84 33.61 0.23 -4.32 16 17 H 0.44 3.36 8.96 -190.44 -1.71 1.65 16 18 C -0.03 -0.40 8.12 -81.96 -0.67 -1.07 16 19 C -0.16 -2.65 6.83 -104.44 -0.71 -3.36 16 20 C -0.05 -0.65 6.78 -26.97 -0.18 -0.83 16 21 C -0.12 -1.02 7.13 -25.16 -0.18 -1.20 16 22 C -0.03 -0.27 6.78 -26.84 -0.18 -0.46 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.07 1.23 5.92 -51.93 -0.31 0.93 16 25 H 0.07 1.29 8.03 -51.93 -0.42 0.87 16 26 H 0.04 1.34 7.50 -51.93 -0.39 0.95 16 27 H 0.03 0.96 8.07 -51.93 -0.42 0.54 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 290.33 15.07 4.38 4.38 Total: -1.00 -35.74 290.33 -8.03 -43.76 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -5.74 Total: -3.87 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -2.47 Total: 1.78 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.74 Total: -49.19 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.09 Total: -14.34 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -35.74 -8.03 -43.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126717380.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.687 kcal (2) G-P(sol) polarization free energy of solvation -35.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds