Wall clock time and date at job start Thu Apr 9 2020 12:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 119.99835 * 2 1 4 4 C 1.50706 * 109.47105 * 89.99642 * 3 2 1 5 5 H 1.08000 * 119.99488 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00020 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99614 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 120.00107 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.46973 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47072 * 119.99643 * 8 6 4 11 11 H 1.48497 * 109.47239 * 240.00337 * 8 6 4 12 12 C 1.34771 * 120.00413 * 179.97438 * 2 1 3 13 13 O 1.21567 * 120.00432 * 185.32791 * 12 2 1 14 14 C 1.47720 * 119.99762 * 5.33428 * 12 2 1 15 15 N 1.31839 * 126.57117 * 5.43118 * 14 12 2 16 16 N 1.28459 * 110.05968 * 179.82123 * 15 14 12 17 17 H 0.97003 * 124.88689 * 180.22277 * 16 15 14 18 18 C 1.35250 * 110.22799 * 0.46135 * 16 15 14 19 19 C 1.35047 * 107.07836 * 359.71128 * 18 16 15 20 20 C 1.50945 * 110.52932 * 180.02562 * 19 18 16 21 21 C 1.54517 * 104.96624 * 16.77078 * 20 19 18 22 22 C 1.51235 * 142.76825 * 179.71105 * 18 16 15 23 23 H 1.09004 * 109.47153 * 95.28702 * 1 2 3 24 24 H 1.09003 * 109.47654 * 215.28372 * 1 2 3 25 25 H 1.08994 * 109.47856 * 335.29061 * 1 2 3 26 26 H 1.08993 * 109.46900 * 209.99664 * 3 2 1 27 27 H 1.08998 * 109.46807 * 330.00121 * 3 2 1 28 28 H 0.96998 * 119.99594 * 179.97438 * 7 6 4 29 29 H 1.09002 * 110.34530 * 135.63839 * 20 19 18 30 30 H 1.08996 * 110.34218 * 257.79096 * 20 19 18 31 31 H 1.08998 * 110.93509 * 92.68284 * 21 20 19 32 32 H 1.09001 * 110.92620 * 216.31763 * 21 20 19 33 33 H 1.09005 * 110.32841 * 44.26901 * 22 18 16 34 34 H 1.09003 * 110.41572 * 282.10004 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 1.4209 5 1 2.0972 1.0963 2.2417 6 6 3.1258 2.8781 1.6728 7 7 3.5522 3.6187 0.6732 8 14 3.4364 3.4178 3.4339 9 1 2.8595 2.4171 4.3674 10 1 4.8988 3.5265 3.6677 11 1 2.7982 4.7383 3.6669 12 6 2.1389 -1.1671 0.0005 13 8 3.3506 -1.1693 0.0983 14 6 1.4051 -2.4437 -0.1178 15 7 0.1121 -2.5898 -0.3298 16 7 -0.1877 -3.8379 -0.3808 17 1 -1.0797 -4.1885 -0.5305 18 6 0.9183 -4.5927 -0.1905 19 6 1.9538 -3.7429 -0.0195 20 6 3.2361 -4.5084 0.1999 21 6 2.9311 -5.9444 -0.2821 22 6 1.3988 -6.0240 -0.1027 23 1 -0.3634 -0.0947 -1.0233 24 1 -0.3634 -0.8389 0.5936 25 1 -0.3634 0.9335 0.4295 26 1 3.1498 1.1384 -0.5138 27 1 1.6083 2.0284 -0.5138 28 1 4.0284 4.4450 0.8504 29 1 4.0427 -4.0739 -0.3906 30 1 3.5001 -4.5101 1.2574 31 1 3.2074 -6.0708 -1.3289 32 1 3.4357 -6.6806 0.3435 33 1 0.9547 -6.6220 -0.8985 34 1 1.1534 -6.4484 0.8708 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126717380.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:16 Heat of formation + Delta-G solvation = 29.370519 kcal Electronic energy + Delta-G solvation = -18024.225007 eV Core-core repulsion = 15151.248256 eV Total energy + Delta-G solvation = -2872.976751 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.87067 -40.32845 -37.73341 -36.60559 -34.77654 -32.92796 -29.98573 -29.62201 -28.41130 -27.48365 -25.83770 -23.58495 -22.46484 -20.98350 -19.90378 -18.71973 -18.55617 -17.57085 -17.20448 -17.05174 -16.25309 -15.97902 -15.36313 -14.64678 -14.35050 -14.25734 -13.94156 -13.80698 -13.60414 -13.46368 -13.06762 -12.88373 -12.75515 -12.55162 -12.25340 -12.00794 -11.93392 -11.71761 -11.54297 -10.96231 -10.65772 -10.32280 -9.61659 -9.43571 -8.23578 -6.38707 0.54650 1.11335 1.35754 1.38601 1.50992 1.76437 2.25403 2.42390 2.44488 3.05376 3.23608 3.62220 3.73989 4.11373 4.23788 4.27899 4.46046 4.68487 4.70789 4.82705 4.86817 4.92878 5.02346 5.03361 5.10189 5.17197 5.20008 5.39736 5.42953 5.54042 5.79933 6.03031 6.19930 6.62547 6.69731 6.87022 7.23146 7.38438 8.84151 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.034275 B = 0.005490 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.720473 B = 5098.771245 C = 5462.362040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.598 5.598 3 C 0.260 3.740 4 C -0.544 4.544 5 H 0.048 0.952 6 C 0.009 3.991 7 N -0.927 5.927 8 Si 0.972 3.028 9 H -0.270 1.270 10 H -0.278 1.278 11 H -0.265 1.265 12 C 0.575 3.425 13 O -0.582 6.582 14 C -0.017 4.017 15 N -0.253 5.253 16 N -0.347 5.347 17 H 0.462 0.538 18 C 0.000 4.000 19 C -0.205 4.205 20 C -0.057 4.057 21 C -0.103 4.103 22 C -0.026 4.026 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.001 0.999 27 H 0.030 0.970 28 H 0.269 0.731 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.617 -21.756 -1.829 23.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.328 5.328 3 C 0.139 3.861 4 C -0.582 4.582 5 H 0.067 0.933 6 C -0.190 4.190 7 N -0.567 5.567 8 Si 0.796 3.204 9 H -0.195 1.195 10 H -0.203 1.203 11 H -0.190 1.190 12 C 0.362 3.638 13 O -0.461 6.461 14 C -0.175 4.175 15 N -0.091 5.091 16 N -0.063 5.063 17 H 0.311 0.689 18 C -0.128 4.128 19 C -0.215 4.215 20 C -0.095 4.095 21 C -0.141 4.141 22 C -0.065 4.065 23 H 0.083 0.917 24 H 0.102 0.898 25 H 0.087 0.913 26 H 0.019 0.981 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.886 -20.903 -1.996 23.209 hybrid contribution 0.628 0.676 0.668 1.139 sum -9.258 -20.228 -1.327 22.285 Atomic orbital electron populations 1.21894 0.77675 1.02966 1.02271 1.48068 1.08575 1.06129 1.70071 1.18873 0.91047 0.79682 0.96504 1.21665 1.37181 1.06687 0.92682 0.93322 1.25873 0.94656 0.96166 1.02315 1.70056 1.38842 1.14772 1.33024 0.85308 0.78065 0.78350 0.78698 1.19492 1.20343 1.19035 1.17598 0.86206 0.82948 0.77064 1.90692 1.15331 1.87298 1.52825 1.21261 0.90920 0.93731 1.11629 1.73847 1.14497 1.00219 1.20497 1.42806 1.10929 1.01766 1.50794 0.68923 1.22787 0.86091 0.99288 1.04618 1.21304 1.00025 0.90849 1.09356 1.20542 0.92526 0.94997 1.01465 1.22463 0.94526 0.94030 1.03065 1.20829 0.95037 0.85306 1.05328 0.91711 0.89768 0.91314 0.98076 0.95252 0.92223 0.92843 0.90932 0.89899 0.87103 0.87139 0.87244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.63 9.32 127.77 1.19 4.82 16 2 N -0.60 -29.89 2.86 -854.73 -2.44 -32.34 16 3 C 0.26 15.27 5.10 85.63 0.44 15.70 16 4 C -0.54 -33.52 9.39 25.60 0.24 -33.28 16 5 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.53 5.46 84.65 0.46 1.00 16 7 N -0.93 -57.91 13.29 21.45 0.28 -57.62 16 8 Si 0.97 46.77 29.54 68.60 2.03 48.79 16 9 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 C 0.57 29.09 7.66 86.75 0.66 29.76 16 13 O -0.58 -34.27 16.57 -3.93 -0.07 -34.33 16 14 C -0.02 -0.68 6.76 42.42 0.29 -0.39 16 15 N -0.25 -7.91 9.00 -48.24 -0.43 -8.34 16 16 N -0.35 -7.33 6.84 -47.57 -0.33 -7.65 16 17 H 0.46 5.08 8.96 -219.99 -1.97 3.11 16 18 C 0.00 0.01 8.12 41.47 0.34 0.34 16 19 C -0.21 -6.64 6.83 -19.75 -0.13 -6.77 16 20 C -0.06 -1.53 6.78 30.44 0.21 -1.32 16 21 C -0.10 -1.46 7.13 31.61 0.23 -1.24 16 22 C -0.03 -0.30 6.78 30.52 0.21 -0.09 16 23 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 24 H 0.08 2.98 5.92 -2.39 -0.01 2.96 16 25 H 0.07 2.60 8.03 -2.39 -0.02 2.58 16 26 H 0.00 0.07 7.50 -2.39 -0.02 0.06 16 27 H 0.03 1.72 8.07 -2.39 -0.02 1.70 16 28 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -83.54 290.33 2.32 -81.23 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -0.85 Total: 1.74 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 4.12 Total: 8.52 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -2.92 Total: -105.95 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.07 Total: -34.33 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Total: -83.54 2.32 -81.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126717380.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.597 kcal (2) G-P(sol) polarization free energy of solvation -83.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds