Wall clock time and date at job start Thu Apr 9 2020 12:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46949 * 2 1 4 4 C 1.46507 * 119.99828 * 270.00036 * 3 2 1 5 5 C 1.50700 * 109.46938 * 270.00055 * 4 3 2 6 6 H 1.07997 * 120.00475 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99352 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99543 * 179.97438 * 7 5 4 9 9 Si 1.86790 * 120.00428 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47533 * 90.00237 * 9 7 5 11 11 H 1.48502 * 109.47174 * 210.00137 * 9 7 5 12 12 H 1.48510 * 109.47103 * 329.99929 * 9 7 5 13 13 C 1.34770 * 120.00358 * 90.00041 * 3 2 1 14 14 O 1.21593 * 120.00441 * 179.97438 * 13 3 2 15 15 N 1.34780 * 119.99878 * 0.02562 * 13 3 2 16 16 C 1.39971 * 119.99996 * 185.28808 * 15 13 3 17 17 C 1.39272 * 120.48772 * 32.65870 * 16 15 13 18 18 C 1.38514 * 118.36206 * 179.97438 * 17 16 15 19 19 C 1.38275 * 119.23429 * 0.27628 * 18 17 16 20 20 N 1.31858 * 120.91430 * 359.44806 * 19 18 17 21 21 C 1.31823 * 121.79739 * 0.54501 * 20 19 18 22 22 H 1.09003 * 109.46667 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46866 * 299.99455 * 1 2 3 24 24 H 1.08997 * 109.47136 * 60.00280 * 1 2 3 25 25 H 1.09002 * 109.47318 * 240.00365 * 2 1 3 26 26 H 1.09003 * 109.47562 * 119.99852 * 2 1 3 27 27 H 1.08996 * 109.47005 * 30.00173 * 4 3 2 28 28 H 1.08997 * 109.47048 * 150.00009 * 4 3 2 29 29 H 0.96993 * 119.99784 * 179.97438 * 8 7 5 30 30 H 0.97005 * 120.00017 * 5.28370 * 15 13 3 31 31 H 1.07996 * 120.82506 * 359.95945 * 17 16 15 32 32 H 1.08000 * 120.38290 * 180.02562 * 18 17 16 33 33 H 1.07991 * 119.54181 * 179.69671 * 19 18 17 34 34 H 1.07996 * 119.66957 * 179.73116 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2310 -1.0959 7 6 4.1492 2.3906 -2.8776 8 7 5.3915 2.1843 -3.2570 9 14 3.0129 3.4360 -3.9288 10 1 3.1154 4.8561 -3.5070 11 1 3.4065 3.3137 -5.3555 12 1 1.6132 2.9691 -3.7597 13 6 2.2429 2.0166 1.1671 14 8 2.6486 3.1629 1.1671 15 7 2.0188 1.3811 2.3344 16 6 2.1453 2.0740 3.5440 17 6 1.8305 3.4286 3.6186 18 6 1.9712 4.0706 4.8378 19 6 2.4215 3.3532 5.9308 20 7 2.7062 2.0699 5.8282 21 6 2.5859 1.4208 4.6872 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.5816 1.6877 -2.0284 28 1 2.0954 3.1410 -1.1385 29 1 5.7175 2.5748 -4.0829 30 1 1.7698 0.4436 2.3362 31 1 1.4854 3.9654 2.7473 32 1 1.7359 5.1204 4.9328 33 1 2.5377 3.8500 6.8826 34 1 2.8327 0.3704 4.6411 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128603054.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:18 Heat of formation + Delta-G solvation = 18.783951 kcal Electronic energy + Delta-G solvation = -17973.876205 eV Core-core repulsion = 15100.440385 eV Total energy + Delta-G solvation = -2873.435819 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.64954 -39.19489 -35.77856 -34.78914 -32.70338 -31.97949 -30.45419 -29.90620 -27.48559 -23.86523 -23.40955 -23.10939 -21.94328 -19.48149 -18.13704 -17.07599 -16.95674 -16.71133 -15.92407 -15.07654 -14.86109 -14.18543 -13.93478 -13.79564 -13.63753 -13.43404 -12.90846 -12.63957 -12.40149 -12.07268 -11.96139 -11.53646 -11.08532 -10.98396 -10.61277 -10.54967 -10.20480 -9.82611 -9.58169 -9.54798 -9.20372 -8.62284 -8.21355 -7.76310 -6.11883 -4.11150 1.17884 1.42124 2.95593 3.26495 3.32212 3.34422 3.57175 4.00693 4.18183 4.36115 4.57874 4.93635 5.03391 5.10400 5.19603 5.21892 5.40458 5.42391 5.53195 5.65944 5.82769 6.03297 6.14354 6.28293 6.29512 6.40291 6.52547 6.80138 6.96456 7.14523 7.37068 7.56760 8.02005 8.32819 8.43212 8.90700 9.01978 9.47727 11.01578 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.027709 B = 0.005872 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.270391 B = 4767.431927 C = 5195.091642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.600 5.600 4 C 0.231 3.769 5 C -0.531 4.531 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.701 3.299 14 O -0.568 6.568 15 N -0.690 5.690 16 C 0.135 3.865 17 C -0.083 4.083 18 C -0.150 4.150 19 C 0.064 3.936 20 N -0.467 5.467 21 C 0.062 3.938 22 H 0.063 0.937 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.061 0.939 27 H 0.033 0.967 28 H 0.038 0.962 29 H 0.265 0.735 30 H 0.405 0.595 31 H 0.148 0.852 32 H 0.135 0.865 33 H 0.153 0.847 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.241 -2.877 12.293 16.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.018 4.018 3 N -0.334 5.334 4 C 0.110 3.890 5 C -0.570 4.570 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.403 3.597 14 O -0.444 6.444 15 N -0.339 5.339 16 C 0.036 3.964 17 C -0.112 4.112 18 C -0.170 4.170 19 C -0.094 4.094 20 N -0.175 5.175 21 C -0.098 4.098 22 H 0.082 0.918 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.109 0.891 26 H 0.079 0.921 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.242 0.758 31 H 0.166 0.834 32 H 0.153 0.847 33 H 0.170 0.830 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.533 -2.467 12.719 16.697 hybrid contribution -0.729 0.477 -1.502 1.737 sum -11.262 -1.990 11.216 16.018 Atomic orbital electron populations 1.22256 0.96493 1.01764 1.02473 1.21427 0.93569 0.83833 1.03005 1.47274 1.67012 1.13530 1.05590 1.19620 0.97376 0.93192 0.78777 1.21342 0.95361 1.33097 1.07195 0.90773 1.24852 0.95004 0.95772 0.97336 1.69898 1.15125 1.44891 1.23556 0.86852 0.81379 0.81626 0.79806 1.19884 1.21030 1.19061 1.15881 0.78846 0.84932 0.80079 1.90910 1.51070 1.16832 1.85547 1.42907 1.73302 1.14300 1.03438 1.18641 0.97998 0.93327 0.86397 1.21731 0.97154 0.93686 0.98595 1.22057 1.00616 1.01296 0.93044 1.22591 0.97998 0.90062 0.98785 1.67580 1.14203 1.09912 1.25835 1.22488 0.98955 1.00658 0.87729 0.91776 0.92984 0.91941 0.89130 0.92057 0.94923 0.94430 0.92514 0.75778 0.83442 0.84749 0.82982 0.82882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 10.24 37.16 0.38 -1.62 16 2 C 0.11 1.53 5.94 -4.04 -0.02 1.51 16 3 N -0.60 -11.85 2.46 -180.80 -0.44 -12.29 16 4 C 0.23 5.48 4.23 -5.19 -0.02 5.46 16 5 C -0.53 -15.05 9.94 -34.44 -0.34 -15.39 16 6 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 7 C 0.07 2.10 5.47 -17.81 -0.10 2.01 16 8 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 9 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 13 C 0.70 14.11 8.04 -86.92 -0.70 13.41 16 14 O -0.57 -13.76 13.61 5.28 0.07 -13.68 16 15 N -0.69 -10.57 5.23 -14.12 -0.07 -10.65 16 16 C 0.14 2.05 6.31 -83.53 -0.53 1.53 16 17 C -0.08 -1.28 8.77 -39.10 -0.34 -1.62 16 18 C -0.15 -1.88 10.11 -39.47 -0.40 -2.28 16 19 C 0.06 0.78 11.18 -17.53 -0.20 0.59 16 20 N -0.47 -6.52 10.35 -13.09 -0.14 -6.66 16 21 C 0.06 0.84 11.12 -17.33 -0.19 0.65 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 26 H 0.06 0.72 6.29 -51.93 -0.33 0.39 16 27 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 28 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.40 4.82 6.51 -40.82 -0.27 4.55 16 31 H 0.15 2.51 6.47 -52.49 -0.34 2.17 16 32 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16 34 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 291.47 15.07 4.39 4.39 Total: -1.00 -34.38 291.47 -6.75 -41.13 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -4.20 Total: 3.69 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -2.46 Total: 4.23 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.12 Total: -56.32 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.07 Total: -13.68 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -34.38 -6.75 -41.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128603054.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.913 kcal (2) G-P(sol) polarization free energy of solvation -34.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds