Wall clock time and date at job start Thu Apr 9 2020 12:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46949 * 2 1 4 4 C 1.46507 * 119.99828 * 270.00036 * 3 2 1 5 5 C 1.50700 * 109.46938 * 270.00055 * 4 3 2 6 6 H 1.07997 * 120.00475 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99352 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99543 * 179.97438 * 7 5 4 9 9 Si 1.86790 * 120.00428 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47533 * 90.00237 * 9 7 5 11 11 H 1.48502 * 109.47174 * 210.00137 * 9 7 5 12 12 H 1.48510 * 109.47103 * 329.99929 * 9 7 5 13 13 C 1.34770 * 120.00358 * 90.00041 * 3 2 1 14 14 O 1.21593 * 120.00441 * 179.97438 * 13 3 2 15 15 N 1.34780 * 119.99878 * 0.02562 * 13 3 2 16 16 C 1.39971 * 119.99996 * 185.28808 * 15 13 3 17 17 C 1.39272 * 120.48772 * 32.65870 * 16 15 13 18 18 C 1.38514 * 118.36206 * 179.97438 * 17 16 15 19 19 C 1.38275 * 119.23429 * 0.27628 * 18 17 16 20 20 N 1.31858 * 120.91430 * 359.44806 * 19 18 17 21 21 C 1.31823 * 121.79739 * 0.54501 * 20 19 18 22 22 H 1.09003 * 109.46667 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46866 * 299.99455 * 1 2 3 24 24 H 1.08997 * 109.47136 * 60.00280 * 1 2 3 25 25 H 1.09002 * 109.47318 * 240.00365 * 2 1 3 26 26 H 1.09003 * 109.47562 * 119.99852 * 2 1 3 27 27 H 1.08996 * 109.47005 * 30.00173 * 4 3 2 28 28 H 1.08997 * 109.47048 * 150.00009 * 4 3 2 29 29 H 0.96993 * 119.99784 * 179.97438 * 8 7 5 30 30 H 0.97005 * 120.00017 * 5.28370 * 15 13 3 31 31 H 1.07996 * 120.82506 * 359.95945 * 17 16 15 32 32 H 1.08000 * 120.38290 * 180.02562 * 18 17 16 33 33 H 1.07991 * 119.54181 * 179.69671 * 19 18 17 34 34 H 1.07996 * 119.66957 * 179.73116 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2310 -1.0959 7 6 4.1492 2.3906 -2.8776 8 7 5.3915 2.1843 -3.2570 9 14 3.0129 3.4360 -3.9288 10 1 3.1154 4.8561 -3.5070 11 1 3.4065 3.3137 -5.3555 12 1 1.6132 2.9691 -3.7597 13 6 2.2429 2.0166 1.1671 14 8 2.6486 3.1629 1.1671 15 7 2.0188 1.3811 2.3344 16 6 2.1453 2.0740 3.5440 17 6 1.8305 3.4286 3.6186 18 6 1.9712 4.0706 4.8378 19 6 2.4215 3.3532 5.9308 20 7 2.7062 2.0699 5.8282 21 6 2.5859 1.4208 4.6872 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.5816 1.6877 -2.0284 28 1 2.0954 3.1410 -1.1385 29 1 5.7175 2.5748 -4.0829 30 1 1.7698 0.4436 2.3362 31 1 1.4854 3.9654 2.7473 32 1 1.7359 5.1204 4.9328 33 1 2.5377 3.8500 6.8826 34 1 2.8327 0.3704 4.6411 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128603054.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:18 Heat of formation + Delta-G solvation = -5.520634 kcal Electronic energy + Delta-G solvation = -17974.930130 eV Core-core repulsion = 15100.440385 eV Total energy + Delta-G solvation = -2874.489745 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.94242 -40.46867 -37.26204 -36.20573 -34.77759 -33.05205 -31.91397 -31.12752 -29.20640 -25.24585 -24.64659 -24.38424 -23.42092 -20.91381 -19.50004 -19.10562 -18.32480 -17.85613 -17.11469 -16.70408 -16.36837 -15.88826 -15.20423 -14.94663 -14.84336 -14.74540 -14.47605 -14.04882 -13.88500 -13.49134 -13.20748 -13.02996 -12.63256 -12.44413 -12.15757 -12.00413 -11.88012 -11.74716 -11.30171 -10.83048 -10.65241 -10.38667 -9.65255 -9.14037 -8.34037 -6.39421 0.12462 0.31212 1.32867 1.37633 1.45365 1.59059 2.10261 2.31084 2.87734 2.91196 3.01360 3.63320 3.91201 3.98828 4.02103 4.16155 4.33059 4.36673 4.50250 4.70322 4.73834 4.83130 4.95102 4.96564 5.10028 5.22269 5.30972 5.34457 5.45193 5.54882 5.83775 5.91495 6.25183 6.62115 6.92065 6.98403 7.22131 7.51041 8.83153 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.027709 B = 0.005872 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.270391 B = 4767.431927 C = 5195.091642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 N -0.607 5.607 4 C 0.242 3.758 5 C -0.537 4.537 6 H 0.026 0.974 7 C 0.011 3.989 8 N -0.947 5.947 9 Si 0.948 3.052 10 H -0.277 1.277 11 H -0.276 1.276 12 H -0.235 1.235 13 C 0.696 3.304 14 O -0.618 6.618 15 N -0.670 5.670 16 C 0.110 3.890 17 C -0.105 4.105 18 C -0.146 4.146 19 C 0.070 3.930 20 N -0.482 5.482 21 C 0.068 3.932 22 H 0.097 0.903 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.056 0.944 28 H 0.021 0.979 29 H 0.268 0.732 30 H 0.421 0.579 31 H 0.124 0.876 32 H 0.162 0.838 33 H 0.189 0.811 34 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.315 -3.246 13.432 19.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.025 4.025 3 N -0.341 5.341 4 C 0.119 3.881 5 C -0.576 4.576 6 H 0.045 0.955 7 C -0.187 4.187 8 N -0.587 5.587 9 Si 0.771 3.229 10 H -0.203 1.203 11 H -0.201 1.201 12 H -0.158 1.158 13 C 0.398 3.602 14 O -0.498 6.498 15 N -0.321 5.321 16 C 0.012 3.988 17 C -0.133 4.133 18 C -0.166 4.166 19 C -0.088 4.088 20 N -0.191 5.191 21 C -0.092 4.092 22 H 0.116 0.884 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.077 0.923 30 H 0.262 0.738 31 H 0.142 0.858 32 H 0.180 0.820 33 H 0.206 0.794 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -12.650 -2.913 13.911 19.026 hybrid contribution -0.008 0.563 -1.697 1.788 sum -12.658 -2.349 12.213 17.745 Atomic orbital electron populations 1.22166 0.93766 1.03824 1.02106 1.21775 0.95725 0.81014 1.04011 1.47253 1.67155 1.15367 1.04318 1.19264 0.94787 0.92908 0.81132 1.21586 0.97164 1.32156 1.06690 0.95516 1.25856 0.96713 0.97168 0.98960 1.70057 1.17515 1.46599 1.24501 0.85711 0.80552 0.78937 0.77703 1.20278 1.20090 1.15758 1.16081 0.78451 0.84517 0.81165 1.90866 1.53296 1.19164 1.86481 1.42529 1.72571 1.14827 1.02184 1.18844 0.99757 0.93617 0.86583 1.21763 0.98300 0.94184 0.99077 1.22351 0.99687 1.02627 0.91960 1.23208 0.96007 0.89583 0.99982 1.67686 1.14750 1.10838 1.25786 1.22823 0.97773 1.01712 0.86927 0.88422 0.92583 0.93075 0.90057 0.89250 0.92659 0.96109 0.92283 0.73799 0.85817 0.82037 0.79423 0.80447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 10.24 71.98 0.74 -2.58 16 2 C 0.10 2.66 5.94 86.38 0.51 3.18 16 3 N -0.61 -24.00 2.46 -844.18 -2.07 -26.07 16 4 C 0.24 11.52 4.23 85.63 0.36 11.88 16 5 C -0.54 -31.40 9.94 25.60 0.25 -31.15 16 6 H 0.03 1.76 8.06 -2.91 -0.02 1.73 16 7 C 0.01 0.64 5.47 84.65 0.46 1.11 16 8 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 9 Si 0.95 43.92 27.47 68.60 1.88 45.80 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.23 -9.60 6.54 99.48 0.65 -8.95 16 13 C 0.70 28.40 8.04 179.06 1.44 29.84 16 14 O -0.62 -31.07 13.61 -4.01 -0.05 -31.12 16 15 N -0.67 -20.14 5.23 -316.86 -1.66 -21.80 16 16 C 0.11 3.26 6.31 38.24 0.24 3.50 16 17 C -0.10 -3.22 8.77 22.58 0.20 -3.02 16 18 C -0.15 -3.43 10.11 22.34 0.23 -3.21 16 19 C 0.07 1.52 11.18 84.70 0.95 2.47 16 20 N -0.48 -12.34 10.35 -195.33 -2.02 -14.36 16 21 C 0.07 1.71 11.12 84.84 0.94 2.66 16 22 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.08 2.40 8.07 -2.39 -0.02 2.38 16 26 H 0.09 1.91 6.29 -2.39 -0.02 1.90 16 27 H 0.06 2.39 7.13 -2.39 -0.02 2.37 16 28 H 0.02 1.07 6.85 -2.39 -0.02 1.05 16 29 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 30 H 0.42 9.30 6.51 -92.70 -0.60 8.70 16 31 H 0.12 4.39 6.47 -2.91 -0.02 4.37 16 32 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 33 H 0.19 2.65 8.06 -2.92 -0.02 2.63 16 34 H 0.18 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -78.44 291.47 3.15 -75.29 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.45 Total: 17.19 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 6.32 Total: 14.69 kcal Atomic # 7 Polarization: -116.38 SS G_CDS: -5.45 Total: -121.84 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.05 Total: -31.12 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.80 kcal Total: -78.44 3.15 -75.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128603054.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.764 kcal (2) G-P(sol) polarization free energy of solvation -78.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds