Wall clock time and date at job start Thu Apr 9 2020 12:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 N 1.46500 * 109.46746 * 239.99818 * 2 1 3 13 13 C 1.34774 * 120.00106 * 85.00589 * 12 2 1 14 14 O 1.21511 * 120.00208 * 359.97438 * 13 12 2 15 15 C 1.48150 * 119.99695 * 179.97438 * 13 12 2 16 16 C 1.39834 * 120.92426 * 359.97438 * 15 13 12 17 17 C 1.38133 * 118.99971 * 180.02562 * 16 15 13 18 18 N 1.31822 * 120.89843 * 0.02562 * 17 16 15 19 19 C 1.31798 * 122.04871 * 359.97438 * 18 17 16 20 20 C 1.50703 * 119.55244 * 179.97438 * 19 18 17 21 21 N 1.46896 * 109.47500 * 275.00426 * 20 19 18 22 22 C 1.38166 * 120.89862 * 359.71305 * 19 18 17 23 23 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 24 24 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 25 25 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 26 26 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 27 27 H 0.97003 * 120.00040 * 264.99233 * 12 2 1 28 28 H 1.07996 * 120.50141 * 359.97438 * 16 15 13 29 29 H 1.07995 * 119.54419 * 180.02562 * 17 16 15 30 30 H 1.09007 * 109.46990 * 34.99889 * 20 19 18 31 31 H 1.08995 * 109.47469 * 154.99942 * 20 19 18 32 32 H 1.00905 * 111.00187 * 56.04371 * 21 20 19 33 33 H 1.00894 * 111.00163 * 179.97438 * 21 20 19 34 34 H 1.07999 * 120.50709 * 180.29226 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.8268 -0.4197 5.2204 10 1 1.8257 -2.5200 4.0079 11 1 3.8062 -1.1208 4.0082 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0184 -2.3571 14 8 1.8578 1.1605 -2.4119 15 6 2.6413 -0.7167 -3.5666 16 6 2.9803 -2.0728 -3.5253 17 6 3.4376 -2.6841 -4.6765 18 7 3.5562 -2.0069 -5.8012 19 6 3.2479 -0.7281 -5.8835 20 6 3.4058 -0.0086 -7.1982 21 7 4.7919 0.4573 -7.3382 22 6 2.7768 -0.0396 -4.7822 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3635 -1.0276 0.0005 26 1 0.7088 1.1615 3.4843 27 1 2.2490 -1.6318 -1.1526 28 1 2.8867 -2.6334 -2.6070 29 1 3.7014 -3.7311 -4.6546 30 1 3.1669 -0.6889 -8.0157 31 1 2.7304 0.8464 -7.2279 32 1 5.4418 -0.3095 -7.2494 33 1 4.9235 0.9430 -8.2127 34 1 2.5216 1.0071 -4.8579 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130241286.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:20 Heat of formation + Delta-G solvation = -7.211640 kcal Electronic energy + Delta-G solvation = -17456.756160 eV Core-core repulsion = 14582.193087 eV Total energy + Delta-G solvation = -2874.563073 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.46967 -38.59270 -35.07599 -34.91949 -32.81565 -32.12948 -30.88613 -28.88344 -25.78385 -25.31292 -24.20124 -22.56817 -20.94208 -19.50950 -17.98499 -16.62565 -16.28486 -16.05443 -15.30896 -15.21446 -15.07679 -14.63897 -14.27818 -13.96791 -13.52101 -13.27538 -12.90134 -12.56063 -12.40248 -11.76260 -11.57008 -11.14720 -11.00267 -10.81899 -10.39287 -10.27644 -9.84332 -9.74642 -9.23891 -9.15383 -9.10343 -8.86341 -8.60208 -8.02772 -6.16351 -4.26349 0.85839 1.07828 3.23442 3.27537 3.29073 3.30095 3.82557 3.98639 4.12263 4.32104 4.59877 4.64818 4.92463 5.01899 5.10156 5.16209 5.26097 5.42371 5.57965 5.73427 5.97459 6.18324 6.57472 6.77067 6.82308 6.90025 7.08045 7.17639 7.33866 7.47803 7.63101 7.84589 7.86513 8.08799 8.53089 8.69876 8.96390 9.40932 10.89662 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.040251 B = 0.004536 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.467544 B = 6170.718532 C = 6491.173807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.051 0.949 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.696 5.696 13 C 0.540 3.460 14 O -0.542 6.542 15 C -0.074 4.074 16 C -0.143 4.143 17 C 0.094 3.906 18 N -0.475 5.475 19 C 0.117 3.883 20 C 0.116 3.884 21 N -0.844 5.844 22 C -0.098 4.098 23 H 0.092 0.908 24 H 0.015 0.985 25 H 0.027 0.973 26 H 0.266 0.734 27 H 0.389 0.611 28 H 0.141 0.859 29 H 0.160 0.840 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.346 0.654 33 H 0.345 0.655 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.167 -6.002 -15.243 16.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.201 1.201 12 N -0.344 5.344 13 C 0.324 3.676 14 O -0.421 6.421 15 C -0.086 4.086 16 C -0.164 4.164 17 C -0.063 4.063 18 N -0.186 5.186 19 C -0.021 4.021 20 C -0.015 4.015 21 N -0.375 5.375 22 C -0.120 4.120 23 H 0.111 0.889 24 H 0.034 0.966 25 H 0.046 0.954 26 H 0.076 0.924 27 H 0.223 0.777 28 H 0.159 0.841 29 H 0.177 0.823 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.992 -4.994 -15.166 16.458 hybrid contribution 0.124 -1.221 0.927 1.538 sum 4.116 -6.215 -14.239 16.073 Atomic orbital electron populations 1.22087 0.98194 0.99257 1.01065 1.18832 0.91200 0.94104 0.79657 0.93078 1.21150 1.32770 1.13374 0.90245 0.92060 1.24884 0.94724 0.94928 0.99070 1.69891 1.35641 1.22326 1.24111 0.86479 0.79198 0.79565 0.81702 1.21072 1.20119 1.20126 1.46509 1.64017 1.13606 1.10279 1.18152 0.79347 0.86832 0.83245 1.90737 1.51063 1.15408 1.84883 1.20794 0.98257 0.94178 0.95352 1.22429 0.98804 0.94592 1.00566 1.22622 0.96113 1.00015 0.87557 1.67273 1.14622 1.08324 1.28377 1.21016 0.95837 0.89815 0.95459 1.20570 0.91497 0.97582 0.91869 1.58663 1.04119 1.32667 1.42004 1.22087 0.96820 1.01725 0.91322 0.88950 0.96567 0.95359 0.92423 0.77748 0.84091 0.82272 0.93554 0.89229 0.84181 0.84158 0.83555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.16 0.34 -3.30 16 2 C 0.26 6.68 2.56 -69.08 -0.18 6.50 16 3 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 4 C -0.54 -14.08 8.73 -34.44 -0.30 -14.38 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.64 11.32 55.43 0.63 -24.01 16 8 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 9 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.70 -14.54 5.03 -55.79 -0.28 -14.82 16 13 C 0.54 11.13 7.76 -12.19 -0.09 11.04 16 14 O -0.54 -13.17 16.11 5.36 0.09 -13.08 16 15 C -0.07 -1.22 5.91 -104.64 -0.62 -1.84 16 16 C -0.14 -1.89 9.62 -39.02 -0.38 -2.27 16 17 C 0.09 1.12 11.17 -17.59 -0.20 0.92 16 18 N -0.48 -6.21 10.25 -9.52 -0.10 -6.31 16 19 C 0.12 1.54 6.29 -82.63 -0.52 1.02 16 20 C 0.12 1.18 7.09 -4.98 -0.04 1.15 16 21 N -0.84 -8.03 9.61 -11.41 -0.11 -8.14 16 22 C -0.10 -1.49 9.29 -39.02 -0.36 -1.86 16 23 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.39 6.91 6.68 -40.82 -0.27 6.63 16 28 H 0.14 1.58 6.54 -52.49 -0.34 1.24 16 29 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.83 8.04 -51.93 -0.42 0.41 16 32 H 0.35 3.23 8.99 -39.29 -0.35 2.88 16 33 H 0.35 2.37 9.08 -39.29 -0.36 2.02 16 34 H 0.15 2.25 7.74 -52.49 -0.41 1.84 16 LS Contribution 295.40 15.07 4.45 4.45 Total: -1.00 -31.29 295.40 -6.86 -38.15 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -4.09 Total: 9.70 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -2.43 Total: -1.32 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: 0.14 Total: -53.28 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.29 -6.86 -38.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130241286.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.942 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds