Wall clock time and date at job start Thu Apr 9 2020 12:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 N 1.46500 * 109.46746 * 239.99818 * 2 1 3 13 13 C 1.34774 * 120.00106 * 85.00589 * 12 2 1 14 14 O 1.21511 * 120.00208 * 359.97438 * 13 12 2 15 15 C 1.48150 * 119.99695 * 179.97438 * 13 12 2 16 16 C 1.39834 * 120.92426 * 359.97438 * 15 13 12 17 17 C 1.38133 * 118.99971 * 180.02562 * 16 15 13 18 18 N 1.31822 * 120.89843 * 0.02562 * 17 16 15 19 19 C 1.31798 * 122.04871 * 359.97438 * 18 17 16 20 20 C 1.50703 * 119.55244 * 179.97438 * 19 18 17 21 21 N 1.46896 * 109.47500 * 275.00426 * 20 19 18 22 22 C 1.38166 * 120.89862 * 359.71305 * 19 18 17 23 23 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 24 24 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 25 25 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 26 26 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 27 27 H 0.97003 * 120.00040 * 264.99233 * 12 2 1 28 28 H 1.07996 * 120.50141 * 359.97438 * 16 15 13 29 29 H 1.07995 * 119.54419 * 180.02562 * 17 16 15 30 30 H 1.09007 * 109.46990 * 34.99889 * 20 19 18 31 31 H 1.08995 * 109.47469 * 154.99942 * 20 19 18 32 32 H 1.00905 * 111.00187 * 56.04371 * 21 20 19 33 33 H 1.00894 * 111.00163 * 179.97438 * 21 20 19 34 34 H 1.07999 * 120.50709 * 180.29226 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.8268 -0.4197 5.2204 10 1 1.8257 -2.5200 4.0079 11 1 3.8062 -1.1208 4.0082 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0184 -2.3571 14 8 1.8578 1.1605 -2.4119 15 6 2.6413 -0.7167 -3.5666 16 6 2.9803 -2.0728 -3.5253 17 6 3.4376 -2.6841 -4.6765 18 7 3.5562 -2.0069 -5.8012 19 6 3.2479 -0.7281 -5.8835 20 6 3.4058 -0.0086 -7.1982 21 7 4.7919 0.4573 -7.3382 22 6 2.7768 -0.0396 -4.7822 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3635 -1.0276 0.0005 26 1 0.7088 1.1615 3.4843 27 1 2.2490 -1.6318 -1.1526 28 1 2.8867 -2.6334 -2.6070 29 1 3.7014 -3.7311 -4.6546 30 1 3.1669 -0.6889 -8.0157 31 1 2.7304 0.8464 -7.2279 32 1 5.4418 -0.3095 -7.2494 33 1 4.9235 0.9430 -8.2127 34 1 2.5216 1.0071 -4.8579 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130241286.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:19 Heat of formation + Delta-G solvation = -31.601367 kcal Electronic energy + Delta-G solvation = -17457.813778 eV Core-core repulsion = 14582.193087 eV Total energy + Delta-G solvation = -2875.620691 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.66796 -40.15457 -36.83339 -35.94225 -34.50474 -33.56606 -31.91429 -30.73076 -27.37693 -26.74433 -25.52149 -23.67179 -22.64675 -21.18609 -19.43841 -18.07867 -17.68596 -17.10070 -16.84294 -16.63508 -16.23655 -16.10792 -15.63625 -15.35733 -14.83546 -14.50973 -14.34618 -14.11983 -13.71955 -13.34999 -13.03031 -12.90485 -12.76152 -12.56831 -12.29520 -12.17071 -11.26463 -11.16398 -10.96547 -10.62780 -10.56057 -10.15025 -9.87661 -9.63438 -8.18997 -6.37283 -0.34058 0.03736 1.45987 1.48144 1.55968 1.88260 2.22769 2.47444 2.77791 3.11847 3.20586 3.62259 3.68639 3.87112 3.94731 4.00683 4.32251 4.45478 4.66415 4.70599 4.78518 4.87807 4.91056 5.03638 5.07687 5.37249 5.51518 5.56919 5.63857 5.84454 6.04937 6.11856 6.56038 6.67911 6.79479 6.84735 7.24679 7.40131 8.87392 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.040251 B = 0.004536 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.467544 B = 6170.718532 C = 6491.173807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H 0.001 0.999 4 C -0.550 4.550 5 H 0.077 0.923 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.975 3.025 9 H -0.287 1.287 10 H -0.262 1.262 11 H -0.271 1.271 12 N -0.690 5.690 13 C 0.538 3.462 14 O -0.589 6.589 15 C -0.096 4.096 16 C -0.136 4.136 17 C 0.104 3.896 18 N -0.476 5.476 19 C 0.119 3.881 20 C 0.117 3.883 21 N -0.852 5.852 22 C -0.113 4.113 23 H 0.069 0.931 24 H 0.011 0.989 25 H 0.043 0.957 26 H 0.266 0.734 27 H 0.407 0.593 28 H 0.163 0.837 29 H 0.202 0.798 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.347 0.653 33 H 0.360 0.640 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.291 -8.734 -15.986 18.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.166 3.834 3 H 0.019 0.981 4 C -0.588 4.588 5 H 0.095 0.905 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.799 3.201 9 H -0.212 1.212 10 H -0.186 1.186 11 H -0.196 1.196 12 N -0.339 5.339 13 C 0.325 3.675 14 O -0.471 6.471 15 C -0.107 4.107 16 C -0.157 4.157 17 C -0.053 4.053 18 N -0.187 5.187 19 C -0.018 4.018 20 C -0.014 4.014 21 N -0.385 5.385 22 C -0.134 4.134 23 H 0.088 0.912 24 H 0.030 0.970 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.243 0.757 28 H 0.180 0.820 29 H 0.219 0.781 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.160 0.840 33 H 0.175 0.825 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.133 -7.760 -15.948 18.464 hybrid contribution -0.202 -0.368 1.073 1.152 sum 4.931 -8.127 -14.875 17.653 Atomic orbital electron populations 1.21911 0.97967 0.99721 0.99716 1.18453 0.91376 0.92063 0.81544 0.98140 1.21490 1.32955 1.13798 0.90566 0.90538 1.25814 0.94752 0.95537 1.02366 1.70048 1.36812 1.23855 1.24801 0.85356 0.78623 0.78752 0.77370 1.21245 1.18640 1.19587 1.46202 1.64089 1.14309 1.09328 1.18781 0.78122 0.86385 0.84174 1.90703 1.53008 1.17667 1.85756 1.20464 1.00840 0.95702 0.93658 1.22667 0.97795 0.93013 1.02175 1.23300 0.94113 1.01567 0.86345 1.67419 1.14289 1.08052 1.28895 1.21362 0.94676 0.89988 0.95820 1.20609 0.92102 0.97952 0.90729 1.58634 1.03727 1.32903 1.43274 1.22109 0.97956 1.01496 0.91889 0.91192 0.96970 0.93778 0.92452 0.75686 0.81972 0.78113 0.92043 0.88663 0.84017 0.82463 0.84816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.82 9.26 71.98 0.67 -6.15 16 2 C 0.27 13.99 2.56 44.24 0.11 14.10 16 3 H 0.00 0.04 7.58 -2.39 -0.02 0.02 16 4 C -0.55 -28.75 8.73 25.60 0.22 -28.53 16 5 H 0.08 3.67 7.74 -2.91 -0.02 3.65 16 6 C 0.02 0.83 5.30 84.66 0.45 1.28 16 7 N -0.92 -52.27 11.32 21.45 0.24 -52.03 16 8 Si 0.97 41.30 29.54 68.60 2.03 43.32 16 9 H -0.29 -12.13 7.11 99.48 0.71 -11.43 16 10 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 11 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 12 N -0.69 -28.98 5.03 -448.70 -2.26 -31.24 16 13 C 0.54 22.73 7.76 86.88 0.67 23.40 16 14 O -0.59 -30.14 16.11 -3.75 -0.06 -30.20 16 15 C -0.10 -3.09 5.91 -19.88 -0.12 -3.21 16 16 C -0.14 -3.24 9.62 22.63 0.22 -3.03 16 17 C 0.10 2.08 11.17 84.67 0.95 3.02 16 18 N -0.48 -11.03 10.25 -184.05 -1.89 -12.92 16 19 C 0.12 2.95 6.29 42.55 0.27 3.22 16 20 C 0.12 2.19 7.09 85.56 0.61 2.79 16 21 N -0.85 -14.78 9.61 -190.01 -1.83 -16.61 16 22 C -0.11 -3.43 9.29 22.63 0.21 -3.22 16 23 H 0.07 3.87 6.07 -2.39 -0.01 3.86 16 24 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 25 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.27 14.38 8.31 -92.70 -0.77 13.61 16 27 H 0.41 13.91 6.68 -92.71 -0.62 13.29 16 28 H 0.16 3.09 6.54 -2.91 -0.02 3.07 16 29 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 30 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.10 1.65 8.04 -2.39 -0.02 1.63 16 32 H 0.35 5.82 8.99 -89.69 -0.81 5.01 16 33 H 0.36 4.30 9.08 -89.70 -0.81 3.48 16 34 H 0.13 4.30 7.74 -2.91 -0.02 4.28 16 Total: -1.00 -69.33 295.40 -0.59 -69.92 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: -1.09 Total: 26.07 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 4.26 Total: 3.68 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -5.73 Total: -112.79 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.06 Total: -30.20 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.32 kcal Total: -69.33 -0.59 -69.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130241286.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.314 kcal (2) G-P(sol) polarization free energy of solvation -69.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds