Wall clock time and date at job start Thu Apr 9 2020 12:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46846 * 2 1 4 4 C 1.50695 * 109.47396 * 239.99947 * 2 1 3 5 5 H 1.07993 * 120.00541 * 240.00070 * 4 2 1 6 6 C 1.37884 * 119.99678 * 60.00130 * 4 2 1 7 7 N 1.31509 * 120.00282 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99707 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47007 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47106 * 119.99879 * 8 6 4 11 11 H 1.48505 * 109.46905 * 239.99727 * 8 6 4 12 12 N 1.46500 * 109.47106 * 119.99524 * 2 1 3 13 13 C 1.34767 * 120.00521 * 275.00702 * 12 2 1 14 14 O 1.21520 * 119.99946 * 359.97438 * 13 12 2 15 15 C 1.48147 * 120.00205 * 180.02562 * 13 12 2 16 16 C 1.39843 * 120.92301 * 359.97260 * 15 13 12 17 17 C 1.38119 * 119.00364 * 180.02562 * 16 15 13 18 18 N 1.31833 * 120.90003 * 359.72647 * 17 16 15 19 19 C 1.31799 * 122.04572 * 0.56200 * 18 17 16 20 20 C 1.50697 * 119.55377 * 179.71084 * 19 18 17 21 21 N 1.46905 * 109.47066 * 274.73296 * 20 19 18 22 22 C 1.38176 * 120.89540 * 359.44111 * 19 18 17 23 23 H 1.09000 * 109.46846 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47431 * 300.00229 * 1 2 3 25 25 H 1.08996 * 109.47027 * 60.00185 * 1 2 3 26 26 H 0.96999 * 120.00125 * 180.02562 * 7 6 4 27 27 H 0.97003 * 119.99287 * 94.99891 * 12 2 1 28 28 H 1.07999 * 120.49463 * 359.97438 * 16 15 13 29 29 H 1.08001 * 119.55283 * 180.02562 * 17 16 15 30 30 H 1.09001 * 109.47558 * 154.73459 * 20 19 18 31 31 H 1.08998 * 109.47216 * 34.73121 * 20 19 18 32 32 H 1.00901 * 110.99869 * 56.04737 * 21 20 19 33 33 H 1.00896 * 110.99543 * 179.97438 * 21 20 19 34 34 H 1.08000 * 120.50237 * 180.29715 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 3.1465 -2.2869 -3.6037 10 1 1.1662 -1.5866 -4.8161 11 1 3.1467 -0.1872 -4.8165 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8583 1.1609 2.4116 15 6 2.6413 -0.7164 3.5666 16 6 2.9795 -2.0727 3.5257 17 6 3.4359 -2.6842 4.6770 18 7 3.5590 -2.0058 5.8007 19 6 3.2463 -0.7282 5.8841 20 6 3.4030 -0.0089 7.1990 21 7 2.1975 -0.2105 8.0140 22 6 2.7821 -0.0379 4.7808 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7082 1.1609 -3.4844 27 1 2.2490 -1.6317 1.1526 28 1 2.8845 -2.6338 2.6078 29 1 3.7000 -3.7312 4.6553 30 1 3.5438 1.0564 7.0160 31 1 4.2698 -0.4043 7.7285 32 1 2.0088 -1.1932 8.1437 33 1 2.2781 0.2621 8.9018 34 1 2.5323 1.0102 4.8551 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130241497.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:21 Heat of formation + Delta-G solvation = -7.326640 kcal Electronic energy + Delta-G solvation = -17457.268667 eV Core-core repulsion = 14582.700607 eV Total energy + Delta-G solvation = -2874.568059 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.46887 -38.59201 -35.07756 -34.92044 -32.81671 -32.13136 -30.88651 -28.88359 -25.78462 -25.31611 -24.20274 -22.56700 -20.94406 -19.50928 -17.98563 -16.62798 -16.28970 -16.05689 -15.30716 -15.26041 -15.02629 -14.63080 -14.31624 -13.94450 -13.53645 -13.24470 -12.91519 -12.57681 -12.39486 -11.77143 -11.56968 -11.14012 -11.01870 -10.81772 -10.36502 -10.28694 -9.84352 -9.74671 -9.24015 -9.15250 -9.08940 -8.86842 -8.61214 -8.02808 -6.17022 -4.26849 0.85776 1.07872 3.21083 3.27336 3.29209 3.31527 3.82890 3.98183 4.12182 4.31676 4.59617 4.64801 4.92410 5.01942 5.10175 5.15731 5.26178 5.42364 5.58095 5.73457 5.97465 6.18318 6.57446 6.77537 6.81765 6.90900 7.08458 7.17124 7.33973 7.47961 7.63137 7.84621 7.86484 8.08709 8.53028 8.69866 8.96370 9.40570 10.89053 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.043045 B = 0.004537 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.324070 B = 6170.502248 C = 6588.292167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.696 5.696 13 C 0.540 3.460 14 O -0.542 6.542 15 C -0.075 4.075 16 C -0.143 4.143 17 C 0.094 3.906 18 N -0.475 5.475 19 C 0.117 3.883 20 C 0.116 3.884 21 N -0.844 5.844 22 C -0.098 4.098 23 H 0.027 0.973 24 H 0.016 0.984 25 H 0.092 0.908 26 H 0.265 0.735 27 H 0.389 0.611 28 H 0.141 0.859 29 H 0.160 0.840 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.345 0.655 33 H 0.345 0.655 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.411 -5.953 15.206 16.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.069 0.931 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.344 5.344 13 C 0.324 3.676 14 O -0.421 6.421 15 C -0.086 4.086 16 C -0.164 4.164 17 C -0.063 4.063 18 N -0.186 5.186 19 C -0.021 4.021 20 C -0.015 4.015 21 N -0.374 5.374 22 C -0.119 4.119 23 H 0.047 0.953 24 H 0.035 0.965 25 H 0.110 0.890 26 H 0.075 0.925 27 H 0.223 0.777 28 H 0.159 0.841 29 H 0.177 0.823 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.034 -5.005 15.187 16.491 hybrid contribution 0.711 -1.049 -1.092 1.673 sum 4.745 -6.054 14.095 16.057 Atomic orbital electron populations 1.22084 0.98168 0.99281 1.01091 1.18844 0.91236 0.94099 0.79677 0.93085 1.21226 1.32627 1.13337 0.90219 0.91952 1.24889 0.94737 0.94933 0.99094 1.69907 1.35717 1.22421 1.23894 0.86373 0.78620 0.79517 0.82467 1.19711 1.20813 1.20827 1.46508 1.64015 1.13611 1.10269 1.18152 0.79360 0.86842 0.83226 1.90740 1.51074 1.15417 1.84874 1.20794 0.98225 0.94199 0.95368 1.22428 0.98817 0.94571 1.00571 1.22622 0.96113 0.99967 0.87610 1.67280 1.14671 1.08280 1.28366 1.21017 0.95818 0.90069 0.95224 1.20572 0.91872 0.99458 0.89635 1.58671 1.38300 1.18482 1.21996 1.22088 0.96396 1.02106 0.91351 0.95347 0.96524 0.88953 0.92533 0.77743 0.84090 0.82271 0.89218 0.93534 0.84202 0.84157 0.83555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.32 16 2 C 0.26 6.66 2.56 -69.08 -0.18 6.48 16 3 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 4 C -0.54 -14.02 8.73 -34.44 -0.30 -14.32 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.61 11.32 55.43 0.63 -23.98 16 8 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 9 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 12 N -0.70 -14.53 5.03 -55.79 -0.28 -14.81 16 13 C 0.54 11.13 7.76 -12.20 -0.09 11.03 16 14 O -0.54 -13.16 16.11 5.35 0.09 -13.08 16 15 C -0.07 -1.22 5.91 -104.64 -0.62 -1.84 16 16 C -0.14 -1.89 9.62 -39.02 -0.38 -2.27 16 17 C 0.09 1.11 11.17 -17.59 -0.20 0.92 16 18 N -0.48 -6.21 10.25 -9.52 -0.10 -6.31 16 19 C 0.12 1.54 6.29 -82.63 -0.52 1.02 16 20 C 0.12 1.18 7.09 -4.97 -0.04 1.14 16 21 N -0.84 -7.96 9.61 -11.41 -0.11 -8.07 16 22 C -0.10 -1.49 9.29 -39.02 -0.36 -1.85 16 23 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.39 6.91 6.68 -40.82 -0.27 6.64 16 28 H 0.14 1.58 6.54 -52.49 -0.34 1.24 16 29 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.09 0.83 8.04 -51.93 -0.42 0.41 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.35 3.19 8.99 -39.29 -0.35 2.84 16 33 H 0.35 2.35 9.08 -39.29 -0.36 1.99 16 34 H 0.15 2.25 7.74 -52.49 -0.41 1.84 16 LS Contribution 295.40 15.07 4.45 4.45 Total: -1.00 -31.29 295.40 -6.86 -38.16 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -4.09 Total: 9.62 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -2.43 Total: -1.33 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 0.14 Total: -53.17 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.29 -6.86 -38.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130241497.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.832 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds