Wall clock time and date at job start Thu Apr 9 2020 12:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46846 * 2 1 4 4 C 1.50695 * 109.47396 * 239.99947 * 2 1 3 5 5 H 1.07993 * 120.00541 * 240.00070 * 4 2 1 6 6 C 1.37884 * 119.99678 * 60.00130 * 4 2 1 7 7 N 1.31509 * 120.00282 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99707 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47007 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47106 * 119.99879 * 8 6 4 11 11 H 1.48505 * 109.46905 * 239.99727 * 8 6 4 12 12 N 1.46500 * 109.47106 * 119.99524 * 2 1 3 13 13 C 1.34767 * 120.00521 * 275.00702 * 12 2 1 14 14 O 1.21520 * 119.99946 * 359.97438 * 13 12 2 15 15 C 1.48147 * 120.00205 * 180.02562 * 13 12 2 16 16 C 1.39843 * 120.92301 * 359.97260 * 15 13 12 17 17 C 1.38119 * 119.00364 * 180.02562 * 16 15 13 18 18 N 1.31833 * 120.90003 * 359.72647 * 17 16 15 19 19 C 1.31799 * 122.04572 * 0.56200 * 18 17 16 20 20 C 1.50697 * 119.55377 * 179.71084 * 19 18 17 21 21 N 1.46905 * 109.47066 * 274.73296 * 20 19 18 22 22 C 1.38176 * 120.89540 * 359.44111 * 19 18 17 23 23 H 1.09000 * 109.46846 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47431 * 300.00229 * 1 2 3 25 25 H 1.08996 * 109.47027 * 60.00185 * 1 2 3 26 26 H 0.96999 * 120.00125 * 180.02562 * 7 6 4 27 27 H 0.97003 * 119.99287 * 94.99891 * 12 2 1 28 28 H 1.07999 * 120.49463 * 359.97438 * 16 15 13 29 29 H 1.08001 * 119.55283 * 180.02562 * 17 16 15 30 30 H 1.09001 * 109.47558 * 154.73459 * 20 19 18 31 31 H 1.08998 * 109.47216 * 34.73121 * 20 19 18 32 32 H 1.00901 * 110.99869 * 56.04737 * 21 20 19 33 33 H 1.00896 * 110.99543 * 179.97438 * 21 20 19 34 34 H 1.08000 * 120.50237 * 180.29715 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 3.1465 -2.2869 -3.6037 10 1 1.1662 -1.5866 -4.8161 11 1 3.1467 -0.1872 -4.8165 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8583 1.1609 2.4116 15 6 2.6413 -0.7164 3.5666 16 6 2.9795 -2.0727 3.5257 17 6 3.4359 -2.6842 4.6770 18 7 3.5590 -2.0058 5.8007 19 6 3.2463 -0.7282 5.8841 20 6 3.4030 -0.0089 7.1990 21 7 2.1975 -0.2105 8.0140 22 6 2.7821 -0.0379 4.7808 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7082 1.1609 -3.4844 27 1 2.2490 -1.6317 1.1526 28 1 2.8845 -2.6338 2.6078 29 1 3.7000 -3.7312 4.6553 30 1 3.5438 1.0564 7.0160 31 1 4.2698 -0.4043 7.7285 32 1 2.0088 -1.1932 8.1437 33 1 2.2781 0.2621 8.9018 34 1 2.5323 1.0102 4.8551 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130241497.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:21 Heat of formation + Delta-G solvation = -31.709885 kcal Electronic energy + Delta-G solvation = -17458.326004 eV Core-core repulsion = 14582.700607 eV Total energy + Delta-G solvation = -2875.625396 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.66705 -40.15366 -36.83442 -35.94157 -34.50601 -33.56614 -31.91293 -30.73258 -27.38233 -26.74378 -25.52307 -23.67029 -22.64927 -21.18575 -19.43932 -18.08408 -17.68823 -17.10253 -16.84795 -16.64059 -16.26963 -15.97752 -15.76511 -15.29565 -14.85156 -14.50571 -14.33521 -14.14103 -13.72620 -13.34976 -13.02232 -12.91967 -12.77747 -12.56784 -12.31003 -12.13148 -11.26667 -11.14040 -10.96428 -10.64567 -10.56400 -10.14899 -9.87628 -9.63628 -8.19486 -6.37560 -0.34096 0.03788 1.45138 1.46108 1.58196 1.88226 2.22792 2.47013 2.77826 3.11562 3.20515 3.62242 3.68614 3.87168 3.94725 4.00694 4.32252 4.45467 4.66463 4.70523 4.78633 4.87912 4.91063 5.03669 5.07683 5.37162 5.51695 5.57030 5.63755 5.84214 6.04776 6.11752 6.56126 6.68228 6.79421 6.84710 7.24617 7.39986 8.87336 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.043045 B = 0.004537 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.324070 B = 6170.502248 C = 6588.292167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.268 3.732 3 H 0.001 0.999 4 C -0.548 4.548 5 H 0.077 0.923 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.975 3.025 9 H -0.258 1.258 10 H -0.278 1.278 11 H -0.285 1.285 12 N -0.690 5.690 13 C 0.539 3.461 14 O -0.589 6.589 15 C -0.096 4.096 16 C -0.136 4.136 17 C 0.104 3.896 18 N -0.476 5.476 19 C 0.119 3.881 20 C 0.117 3.883 21 N -0.852 5.852 22 C -0.113 4.113 23 H 0.043 0.957 24 H 0.011 0.989 25 H 0.069 0.931 26 H 0.266 0.734 27 H 0.406 0.594 28 H 0.163 0.837 29 H 0.202 0.798 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.347 0.653 33 H 0.360 0.640 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.556 -8.679 15.958 18.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.165 3.835 3 H 0.019 0.981 4 C -0.586 4.586 5 H 0.095 0.905 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.799 3.201 9 H -0.181 1.181 10 H -0.204 1.204 11 H -0.211 1.211 12 N -0.339 5.339 13 C 0.325 3.675 14 O -0.471 6.471 15 C -0.107 4.107 16 C -0.157 4.157 17 C -0.053 4.053 18 N -0.187 5.187 19 C -0.018 4.018 20 C -0.014 4.014 21 N -0.385 5.385 22 C -0.134 4.134 23 H 0.062 0.938 24 H 0.030 0.970 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.243 0.757 28 H 0.180 0.820 29 H 0.219 0.781 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.160 0.840 33 H 0.175 0.825 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.192 -7.766 15.979 18.510 hybrid contribution 0.365 -0.198 -1.240 1.308 sum 5.557 -7.964 14.739 17.650 Atomic orbital electron populations 1.21911 0.98028 0.99716 0.99698 1.18464 0.91342 0.92107 0.81569 0.98066 1.21547 1.32793 1.13719 0.90521 0.90500 1.25817 0.94777 0.95547 1.02386 1.70055 1.36865 1.23946 1.24677 0.85253 0.78089 0.78524 0.78200 1.18138 1.20406 1.21058 1.46199 1.64085 1.14313 1.09320 1.18780 0.78136 0.86392 0.84151 1.90706 1.53017 1.17674 1.85745 1.20463 1.00803 0.95718 0.93676 1.22665 0.97807 0.92997 1.02182 1.23299 0.94116 1.01520 0.86395 1.67425 1.14367 1.08000 1.28866 1.21362 0.94651 0.90210 0.95619 1.20607 0.92692 0.99578 0.88529 1.58640 1.37996 1.18859 1.22983 1.22109 0.97536 1.01877 0.91917 0.93792 0.97019 0.91191 0.92464 0.75686 0.81977 0.78114 0.88687 0.92070 0.84013 0.82466 0.84819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.87 9.26 71.98 0.67 -6.20 16 2 C 0.27 13.95 2.56 44.24 0.11 14.06 16 3 H 0.00 0.09 7.58 -2.39 -0.02 0.07 16 4 C -0.55 -28.58 8.73 25.60 0.22 -28.35 16 5 H 0.08 3.70 7.74 -2.91 -0.02 3.68 16 6 C 0.01 0.79 5.30 84.66 0.45 1.24 16 7 N -0.92 -52.23 11.32 21.45 0.24 -51.98 16 8 Si 0.97 41.27 29.54 68.60 2.03 43.29 16 9 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 10 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 12 N -0.69 -28.96 5.03 -448.70 -2.26 -31.21 16 13 C 0.54 22.72 7.76 86.88 0.67 23.39 16 14 O -0.59 -30.13 16.11 -3.78 -0.06 -30.19 16 15 C -0.10 -3.09 5.91 -19.88 -0.12 -3.21 16 16 C -0.14 -3.24 9.62 22.63 0.22 -3.03 16 17 C 0.10 2.07 11.17 84.66 0.95 3.02 16 18 N -0.48 -11.03 10.25 -184.04 -1.89 -12.92 16 19 C 0.12 2.96 6.29 42.55 0.27 3.22 16 20 C 0.12 2.18 7.09 85.55 0.61 2.79 16 21 N -0.85 -14.60 9.61 -190.00 -1.83 -16.43 16 22 C -0.11 -3.42 9.29 22.63 0.21 -3.21 16 23 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.07 3.88 6.07 -2.39 -0.01 3.87 16 26 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 27 H 0.41 13.91 6.68 -92.71 -0.62 13.29 16 28 H 0.16 3.09 6.54 -2.91 -0.02 3.07 16 29 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 30 H 0.09 1.66 8.04 -2.39 -0.02 1.64 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.35 5.73 8.99 -89.69 -0.81 4.92 16 33 H 0.36 4.24 9.08 -89.70 -0.81 3.43 16 34 H 0.13 4.30 7.74 -2.91 -0.02 4.28 16 Total: -1.00 -69.28 295.40 -0.59 -69.87 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -1.09 Total: 25.84 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 4.26 Total: 3.73 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -5.73 Total: -112.54 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.06 Total: -30.19 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.29 kcal Total: -69.28 -0.59 -69.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130241497.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.162 kcal (2) G-P(sol) polarization free energy of solvation -69.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds