Wall clock time and date at job start Thu Apr 9 2020 12:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36939 * 120.00075 * 2 1 4 4 H 1.08005 * 119.99585 * 159.30515 * 3 2 1 5 5 C 1.38809 * 120.00213 * 339.03873 * 3 2 1 6 6 N 1.31615 * 119.99902 * 348.31143 * 5 3 2 7 7 Si 1.86795 * 120.00101 * 168.31743 * 5 3 2 8 8 H 1.48499 * 109.47284 * 89.99421 * 7 5 3 9 9 H 1.48502 * 109.47238 * 210.00074 * 7 5 3 10 10 H 1.48507 * 109.46878 * 329.99480 * 7 5 3 11 11 C 1.46499 * 119.99912 * 180.02562 * 2 1 3 12 12 H 1.09006 * 109.25284 * 179.46984 * 11 2 1 13 13 C 1.52741 * 109.25780 * 59.99482 * 11 2 1 14 14 C 1.53330 * 108.36421 * 188.61309 * 13 11 2 15 15 C 1.52726 * 108.38349 * 69.93044 * 14 13 11 16 16 C 1.50648 * 110.59490 * 308.95072 * 15 14 13 17 17 C 1.38931 * 117.72206 * 197.46582 * 16 15 14 18 18 C 1.37892 * 120.58231 * 180.25196 * 17 16 15 19 19 C 1.38490 * 119.74456 * 0.02562 * 18 17 16 20 20 F 1.35104 * 120.13712 * 179.90730 * 19 18 17 21 21 C 1.38146 * 119.71713 * 359.87969 * 19 18 17 22 22 C 1.37682 * 122.56044 * 17.53156 * 16 15 14 23 23 H 1.08993 * 109.47955 * 84.87616 * 1 2 3 24 24 H 1.08999 * 109.47483 * 204.88396 * 1 2 3 25 25 H 1.09010 * 109.46943 * 324.87781 * 1 2 3 26 26 H 0.96995 * 120.00438 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.67829 * 308.33200 * 13 11 2 28 28 H 1.08997 * 109.68265 * 68.85446 * 13 11 2 29 29 H 1.09002 * 109.67494 * 189.64687 * 14 13 11 30 30 H 1.08998 * 109.68658 * 310.16636 * 14 13 11 31 31 H 1.09003 * 109.25500 * 69.23608 * 15 14 13 32 32 H 1.09000 * 109.25376 * 188.70440 * 15 14 13 33 33 H 1.08001 * 119.70900 * 0.22633 * 17 16 15 34 34 H 1.08005 * 120.12351 * 179.97438 * 18 17 16 35 35 H 1.07994 * 119.73797 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1774 1.2160 0.3306 5 6 1.5245 2.3483 -0.4300 6 7 0.3651 2.2815 -1.0492 7 14 2.3290 4.0072 -0.1301 8 1 3.2045 4.3480 -1.2802 9 1 1.2791 5.0470 0.0180 10 1 3.1430 3.9456 1.1104 11 6 2.1974 -1.2687 -0.0006 12 1 3.2683 -1.0655 -0.0100 13 6 1.8248 -2.0650 -1.2496 14 6 2.4282 -3.4691 -1.1252 15 6 1.6757 -4.2213 -0.0296 16 6 1.6149 -3.3996 1.2315 17 6 1.3061 -4.0560 2.4164 18 6 1.2296 -3.3603 3.6045 19 6 1.4621 -1.9951 3.6175 20 9 1.3874 -1.3053 4.7768 21 6 1.7711 -1.3418 2.4402 22 6 1.8505 -2.0431 1.2442 23 1 -0.3635 0.0918 -1.0234 24 1 -0.3634 -0.9322 0.4324 25 1 -0.3633 0.8406 0.5913 26 1 -0.0716 3.0937 -1.3501 27 1 0.7401 -2.1371 -1.3289 28 1 2.2255 -1.5695 -2.1339 29 1 2.3237 -3.9986 -2.0722 30 1 3.4830 -3.3934 -0.8614 31 1 0.6620 -4.4328 -0.3699 32 1 2.1882 -5.1605 0.1786 33 1 1.1239 -5.1205 2.4068 34 1 0.9886 -3.8780 4.5212 35 1 1.9520 -0.2771 2.4499 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132321168.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:23 Heat of formation + Delta-G solvation = -7.820919 kcal Electronic energy + Delta-G solvation = -18538.710563 eV Core-core repulsion = 15644.201108 eV Total energy + Delta-G solvation = -2894.509455 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.45761 -39.66065 -36.10953 -34.57672 -32.00310 -30.03023 -29.56684 -27.66901 -25.96402 -23.70328 -22.47204 -22.23884 -20.62680 -18.87996 -16.83259 -16.70304 -16.09070 -15.38106 -15.14822 -14.88274 -14.24821 -13.88574 -13.71202 -13.24256 -13.09899 -12.66369 -12.34896 -12.25153 -12.04185 -11.70659 -11.04195 -10.94794 -10.84354 -10.82706 -10.53144 -10.37538 -10.31215 -10.07323 -9.85822 -9.63728 -8.59144 -8.40149 -8.05036 -6.81037 -5.72801 -3.18309 1.55624 1.65751 3.37896 3.44865 3.46432 3.95947 4.49077 4.66298 4.93712 5.06572 5.24804 5.31794 5.37737 5.44395 5.57017 5.61624 5.72306 5.94302 6.00127 6.08250 6.16927 6.26705 6.33321 6.40545 6.52796 6.59083 6.63446 6.81580 6.92244 6.95297 7.12550 7.37206 7.45229 7.73904 7.82301 8.37763 9.22875 9.85465 10.33920 11.31964 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021446 B = 0.008334 C = 0.006555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.274040 B = 3358.873534 C = 4270.588002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.167 3.833 2 N -0.592 5.592 3 C -0.258 4.258 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.290 1.290 10 H -0.280 1.280 11 C 0.209 3.791 12 H 0.077 0.923 13 C -0.128 4.128 14 C -0.119 4.119 15 C -0.074 4.074 16 C -0.092 4.092 17 C -0.105 4.105 18 C -0.165 4.165 19 C 0.080 3.920 20 F -0.148 7.148 21 C -0.122 4.122 22 C -0.045 4.045 23 H 0.029 0.971 24 H -0.004 1.004 25 H 0.043 0.957 26 H 0.252 0.748 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.100 -12.738 3.750 13.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.313 5.313 3 C -0.387 4.387 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.216 1.216 10 H -0.205 1.205 11 C 0.100 3.900 12 H 0.095 0.905 13 C -0.167 4.167 14 C -0.157 4.157 15 C -0.111 4.111 16 C -0.093 4.093 17 C -0.123 4.123 18 C -0.184 4.184 19 C 0.061 3.939 20 F -0.126 7.126 21 C -0.141 4.141 22 C -0.048 4.048 23 H 0.047 0.953 24 H 0.014 0.986 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.967 -12.518 3.730 13.210 hybrid contribution 0.201 1.121 0.433 1.218 sum 2.169 -11.398 4.164 12.327 Atomic orbital electron populations 1.20728 0.82330 0.95362 0.99272 1.43975 1.01882 0.99709 1.85706 1.19237 0.97052 0.85071 1.37346 0.91272 1.24978 0.97545 0.98372 0.98597 1.70080 1.17056 1.26841 1.41141 0.86275 0.78339 0.84018 0.78007 1.21456 1.21625 1.20539 1.19251 0.96379 0.85885 0.88464 0.90534 1.22063 1.01106 0.93925 0.99631 1.21582 0.99700 0.96811 0.97617 1.20412 1.00909 0.97211 0.92559 1.19734 1.00939 0.93599 0.94980 1.20871 1.00480 0.99429 0.91516 1.20894 1.05554 0.92634 0.99309 1.17710 1.04146 0.90180 0.81881 1.91455 1.94195 1.79800 1.47200 1.21375 1.00307 1.02020 0.90419 1.20600 0.95309 0.92352 0.96506 0.95275 0.98570 0.93823 0.93761 0.91913 0.91494 0.92080 0.91950 0.90992 0.91433 0.85972 0.85706 0.83792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.14 7.67 59.84 0.46 4.60 16 2 N -0.59 -14.38 1.95 -175.00 -0.34 -14.72 16 3 C -0.26 -6.89 9.50 -15.06 -0.14 -7.03 16 4 H 0.07 1.80 7.79 -52.48 -0.41 1.40 16 5 C 0.00 0.09 5.13 -17.43 -0.09 0.00 16 6 N -0.91 -26.13 10.52 55.49 0.58 -25.55 16 7 Si 0.90 21.75 29.57 -169.99 -5.03 16.73 16 8 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 C 0.21 4.18 2.58 -69.24 -0.18 4.01 16 12 H 0.08 1.55 7.84 -51.93 -0.41 1.15 16 13 C -0.13 -2.25 5.37 -26.69 -0.14 -2.40 16 14 C -0.12 -1.62 5.98 -26.70 -0.16 -1.78 16 15 C -0.07 -0.95 5.67 -28.05 -0.16 -1.11 16 16 C -0.09 -1.42 5.74 -104.59 -0.60 -2.02 16 17 C -0.10 -1.45 9.60 -39.45 -0.38 -1.83 16 18 C -0.16 -2.44 10.03 -39.62 -0.40 -2.84 16 19 C 0.08 1.40 7.30 -39.52 -0.29 1.11 16 20 F -0.15 -2.65 17.27 2.25 0.04 -2.61 16 21 C -0.12 -2.36 9.04 -39.38 -0.36 -2.71 16 22 C -0.05 -0.83 4.57 -104.62 -0.48 -1.31 16 23 H 0.03 0.77 7.40 -51.93 -0.38 0.39 16 24 H 0.00 -0.10 7.32 -51.93 -0.38 -0.48 16 25 H 0.04 1.17 7.16 -51.92 -0.37 0.80 16 26 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.06 1.17 7.35 -51.93 -0.38 0.79 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.83 8.10 -51.93 -0.42 0.40 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.72 8.12 -51.93 -0.42 0.29 16 33 H 0.12 1.32 8.05 -52.49 -0.42 0.89 16 34 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 35 H 0.14 3.10 7.50 -52.49 -0.39 2.71 16 LS Contribution 286.26 15.07 4.31 4.31 Total: -1.00 -28.59 286.26 -8.16 -36.75 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -4.82 Total: -1.61 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -2.91 Total: -13.30 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.24 Total: -40.27 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.59 -8.16 -36.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132321168.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.928 kcal (2) G-P(sol) polarization free energy of solvation -28.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds