Wall clock time and date at job start Thu Apr 9 2020 12:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36939 * 120.00075 * 2 1 4 4 H 1.08005 * 119.99585 * 159.30515 * 3 2 1 5 5 C 1.38809 * 120.00213 * 339.03873 * 3 2 1 6 6 N 1.31615 * 119.99902 * 348.31143 * 5 3 2 7 7 Si 1.86795 * 120.00101 * 168.31743 * 5 3 2 8 8 H 1.48499 * 109.47284 * 89.99421 * 7 5 3 9 9 H 1.48502 * 109.47238 * 210.00074 * 7 5 3 10 10 H 1.48507 * 109.46878 * 329.99480 * 7 5 3 11 11 C 1.46499 * 119.99912 * 180.02562 * 2 1 3 12 12 H 1.09006 * 109.25284 * 179.46984 * 11 2 1 13 13 C 1.52741 * 109.25780 * 59.99482 * 11 2 1 14 14 C 1.53330 * 108.36421 * 188.61309 * 13 11 2 15 15 C 1.52726 * 108.38349 * 69.93044 * 14 13 11 16 16 C 1.50648 * 110.59490 * 308.95072 * 15 14 13 17 17 C 1.38931 * 117.72206 * 197.46582 * 16 15 14 18 18 C 1.37892 * 120.58231 * 180.25196 * 17 16 15 19 19 C 1.38490 * 119.74456 * 0.02562 * 18 17 16 20 20 F 1.35104 * 120.13712 * 179.90730 * 19 18 17 21 21 C 1.38146 * 119.71713 * 359.87969 * 19 18 17 22 22 C 1.37682 * 122.56044 * 17.53156 * 16 15 14 23 23 H 1.08993 * 109.47955 * 84.87616 * 1 2 3 24 24 H 1.08999 * 109.47483 * 204.88396 * 1 2 3 25 25 H 1.09010 * 109.46943 * 324.87781 * 1 2 3 26 26 H 0.96995 * 120.00438 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.67829 * 308.33200 * 13 11 2 28 28 H 1.08997 * 109.68265 * 68.85446 * 13 11 2 29 29 H 1.09002 * 109.67494 * 189.64687 * 14 13 11 30 30 H 1.08998 * 109.68658 * 310.16636 * 14 13 11 31 31 H 1.09003 * 109.25500 * 69.23608 * 15 14 13 32 32 H 1.09000 * 109.25376 * 188.70440 * 15 14 13 33 33 H 1.08001 * 119.70900 * 0.22633 * 17 16 15 34 34 H 1.08005 * 120.12351 * 179.97438 * 18 17 16 35 35 H 1.07994 * 119.73797 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1774 1.2160 0.3306 5 6 1.5245 2.3483 -0.4300 6 7 0.3651 2.2815 -1.0492 7 14 2.3290 4.0072 -0.1301 8 1 3.2045 4.3480 -1.2802 9 1 1.2791 5.0470 0.0180 10 1 3.1430 3.9456 1.1104 11 6 2.1974 -1.2687 -0.0006 12 1 3.2683 -1.0655 -0.0100 13 6 1.8248 -2.0650 -1.2496 14 6 2.4282 -3.4691 -1.1252 15 6 1.6757 -4.2213 -0.0296 16 6 1.6149 -3.3996 1.2315 17 6 1.3061 -4.0560 2.4164 18 6 1.2296 -3.3603 3.6045 19 6 1.4621 -1.9951 3.6175 20 9 1.3874 -1.3053 4.7768 21 6 1.7711 -1.3418 2.4402 22 6 1.8505 -2.0431 1.2442 23 1 -0.3635 0.0918 -1.0234 24 1 -0.3634 -0.9322 0.4324 25 1 -0.3633 0.8406 0.5913 26 1 -0.0716 3.0937 -1.3501 27 1 0.7401 -2.1371 -1.3289 28 1 2.2255 -1.5695 -2.1339 29 1 2.3237 -3.9986 -2.0722 30 1 3.4830 -3.3934 -0.8614 31 1 0.6620 -4.4328 -0.3699 32 1 2.1882 -5.1605 0.1786 33 1 1.1239 -5.1205 2.4068 34 1 0.9886 -3.8780 4.5212 35 1 1.9520 -0.2771 2.4499 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132321168.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:22 Heat of formation + Delta-G solvation = -21.909900 kcal Electronic energy + Delta-G solvation = -18539.321507 eV Core-core repulsion = 15644.201108 eV Total energy + Delta-G solvation = -2895.120399 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.83087 -40.99505 -37.70712 -36.05432 -33.72190 -31.68918 -30.84313 -29.11371 -28.03751 -25.29374 -23.91779 -23.51660 -22.16564 -20.23102 -18.85150 -18.07226 -17.46246 -16.98332 -16.53023 -16.45932 -15.66439 -15.54709 -15.22111 -14.64024 -14.44368 -14.17794 -13.99613 -13.58803 -13.49676 -13.21520 -12.82554 -12.78289 -12.52344 -12.21741 -12.19379 -12.09058 -12.01601 -11.69580 -11.37464 -11.14949 -10.66508 -9.75550 -9.31446 -8.82494 -7.84354 -5.30420 0.27390 0.38041 1.42918 1.44632 1.53350 2.47050 2.69711 3.29457 3.35812 3.63821 3.81181 3.90277 4.09764 4.20450 4.24633 4.31551 4.47912 4.62250 4.69779 4.80242 4.83362 5.01006 5.07701 5.12647 5.17003 5.22825 5.28909 5.31646 5.40460 5.51683 5.57591 5.64290 5.70708 5.79806 6.09152 6.30638 7.13441 7.85157 8.29131 9.19356 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021446 B = 0.008334 C = 0.006555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.274040 B = 3358.873534 C = 4270.588002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.193 3.807 2 N -0.605 5.605 3 C -0.261 4.261 4 H 0.069 0.931 5 C -0.052 4.052 6 N -0.937 5.937 7 Si 0.965 3.035 8 H -0.282 1.282 9 H -0.294 1.294 10 H -0.274 1.274 11 C 0.205 3.795 12 H 0.064 0.936 13 C -0.121 4.121 14 C -0.111 4.111 15 C -0.072 4.072 16 C -0.087 4.087 17 C -0.090 4.090 18 C -0.152 4.152 19 C 0.061 3.939 20 F -0.157 7.157 21 C -0.148 4.148 22 C -0.066 4.066 23 H 0.005 0.995 24 H 0.015 0.985 25 H 0.010 0.990 26 H 0.247 0.753 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.171 0.829 34 H 0.158 0.842 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.560 -16.161 4.247 16.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.326 5.326 3 C -0.391 4.391 4 H 0.086 0.914 5 C -0.247 4.247 6 N -0.584 5.584 7 Si 0.794 3.206 8 H -0.209 1.209 9 H -0.221 1.221 10 H -0.200 1.200 11 C 0.099 3.901 12 H 0.082 0.918 13 C -0.161 4.161 14 C -0.149 4.149 15 C -0.109 4.109 16 C -0.088 4.088 17 C -0.107 4.107 18 C -0.171 4.171 19 C 0.042 3.958 20 F -0.135 7.135 21 C -0.167 4.167 22 C -0.068 4.068 23 H 0.023 0.977 24 H 0.034 0.966 25 H 0.029 0.971 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.125 0.875 33 H 0.188 0.812 34 H 0.176 0.824 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.458 -15.976 4.237 16.709 hybrid contribution 0.089 2.088 0.336 2.117 sum 2.547 -13.887 4.572 14.841 Atomic orbital electron populations 1.20308 0.82945 0.94771 0.97171 1.44105 1.01760 1.00886 1.85897 1.19527 0.97079 0.86426 1.36032 0.91353 1.25696 0.98344 1.01503 0.99154 1.70234 1.18417 1.27111 1.42666 0.85302 0.77318 0.80000 0.78019 1.20873 1.22057 1.19963 1.19404 0.95228 0.84726 0.90790 0.91823 1.21920 1.00442 0.96459 0.97243 1.21544 0.99692 0.93964 0.99653 1.20529 1.02007 0.97843 0.90481 1.20104 0.99152 0.92282 0.97284 1.21367 0.97917 1.01493 0.89964 1.21299 1.03449 0.91023 1.01297 1.17926 1.05349 0.91575 0.80985 1.91426 1.94385 1.80309 1.47423 1.21152 1.02898 1.00457 0.92207 1.20343 0.97815 0.93882 0.94761 0.97653 0.96642 0.97111 0.94343 0.93125 0.93376 0.89423 0.91503 0.89687 0.87540 0.81197 0.82445 0.87770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.00 7.67 127.77 0.98 10.98 16 2 N -0.60 -30.72 1.95 -707.58 -1.38 -32.11 16 3 C -0.26 -14.56 9.50 84.03 0.80 -13.76 16 4 H 0.07 3.73 7.79 -2.91 -0.02 3.71 16 5 C -0.05 -2.98 5.13 84.86 0.44 -2.54 16 6 N -0.94 -56.41 10.52 21.65 0.23 -56.19 16 7 Si 0.97 46.27 29.57 68.60 2.03 48.30 16 8 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 9 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 10 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 11 C 0.21 8.40 2.58 44.14 0.11 8.52 16 12 H 0.06 2.69 7.84 -2.38 -0.02 2.67 16 13 C -0.12 -4.23 5.37 30.62 0.16 -4.06 16 14 C -0.11 -2.64 5.98 30.61 0.18 -2.45 16 15 C -0.07 -1.48 5.67 29.74 0.17 -1.31 16 16 C -0.09 -2.39 5.74 -19.85 -0.11 -2.51 16 17 C -0.09 -2.01 9.60 22.35 0.21 -1.80 16 18 C -0.15 -3.93 10.03 22.25 0.22 -3.70 16 19 C 0.06 2.09 7.30 22.31 0.16 2.25 16 20 F -0.16 -5.64 17.27 44.97 0.78 -4.86 16 21 C -0.15 -5.86 9.04 22.40 0.20 -5.65 16 22 C -0.07 -2.39 4.57 -19.86 -0.09 -2.48 16 23 H 0.01 0.29 7.40 -2.39 -0.02 0.27 16 24 H 0.02 0.71 7.32 -2.39 -0.02 0.69 16 25 H 0.01 0.59 7.16 -2.38 -0.02 0.57 16 26 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 27 H 0.05 1.87 7.35 -2.39 -0.02 1.85 16 28 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 1.56 8.10 -2.39 -0.02 1.54 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.11 1.49 8.12 -2.39 -0.02 1.47 16 33 H 0.17 2.31 8.05 -2.91 -0.02 2.29 16 34 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 35 H 0.10 4.86 7.50 -2.91 -0.02 4.84 16 Total: -1.00 -65.82 286.26 6.17 -59.65 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: 1.07 Total: 3.72 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 3.44 Total: -18.51 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -1.15 Total: -88.29 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 0.78 Total: -4.86 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -65.82 6.17 -59.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132321168.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.743 kcal (2) G-P(sol) polarization free energy of solvation -65.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds