Wall clock time and date at job start Thu Apr 9 2020 12:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36935 * 120.00057 * 2 1 4 4 H 1.08007 * 119.99523 * 203.12998 * 3 2 1 5 5 C 1.38808 * 120.00237 * 23.13506 * 3 2 1 6 6 N 1.31622 * 119.99785 * 13.21991 * 5 3 2 7 7 Si 1.86799 * 120.00075 * 193.22229 * 5 3 2 8 8 H 1.48501 * 109.46900 * 89.99963 * 7 5 3 9 9 H 1.48509 * 109.46937 * 209.99640 * 7 5 3 10 10 H 1.48500 * 109.47171 * 329.99878 * 7 5 3 11 11 C 1.46507 * 119.99950 * 180.02562 * 2 1 3 12 12 H 1.08992 * 109.21776 * 179.44309 * 11 2 1 13 13 C 1.53047 * 108.80116 * 299.30613 * 11 2 1 14 14 C 1.53321 * 108.13589 * 171.49326 * 13 11 2 15 15 C 1.52739 * 108.38813 * 289.89341 * 14 13 11 16 16 C 1.50640 * 110.58281 * 51.19699 * 15 14 13 17 17 C 1.38920 * 117.72648 * 162.22437 * 16 15 14 18 18 C 1.37889 * 120.57984 * 179.15913 * 17 16 15 19 19 C 1.38491 * 119.74318 * 0.24436 * 18 17 16 20 20 F 1.35100 * 120.14036 * 180.11664 * 19 18 17 21 21 C 1.38149 * 119.71722 * 0.13778 * 19 18 17 22 22 C 1.37684 * 122.55033 * 342.16341 * 16 15 14 23 23 H 1.08998 * 109.46788 * 275.13658 * 1 2 3 24 24 H 1.08998 * 109.47029 * 35.13814 * 1 2 3 25 25 H 1.08999 * 109.47222 * 155.14124 * 1 2 3 26 26 H 0.96999 * 119.99857 * 179.97438 * 6 5 3 27 27 H 1.09005 * 110.05760 * 51.70575 * 13 11 2 28 28 H 1.08997 * 109.56860 * 290.99976 * 13 11 2 29 29 H 1.08997 * 109.68499 * 170.16785 * 14 13 11 30 30 H 1.09003 * 109.70595 * 49.63209 * 14 13 11 31 31 H 1.08993 * 109.25283 * 290.90885 * 15 14 13 32 32 H 1.09001 * 109.24727 * 171.47872 * 15 14 13 33 33 H 1.08001 * 119.71290 * 359.43906 * 17 16 15 34 34 H 1.08006 * 120.12774 * 180.25972 * 18 17 16 35 35 H 1.08009 * 119.73715 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1647 1.2234 -0.3674 5 6 1.5395 2.3397 0.4723 6 7 0.4164 2.2584 1.1539 7 14 2.3120 4.0078 0.1404 8 1 1.7867 4.5510 -1.1380 9 1 1.9765 4.9379 1.2485 10 1 3.7867 3.8606 0.0470 11 6 2.1976 -1.2688 -0.0006 12 1 3.2682 -1.0649 -0.0105 13 6 1.8300 -2.0511 1.2625 14 6 2.4316 -3.4565 1.1453 15 6 1.6677 -4.2190 0.0646 16 6 1.5975 -3.4106 -1.2046 17 6 1.2833 -4.0800 -2.3807 18 6 1.1864 -3.3948 -3.5734 19 6 1.4090 -2.0282 -3.6007 20 9 1.3139 -1.3485 -4.7644 21 6 1.7293 -1.3630 -2.4330 22 6 1.8300 -2.0538 -1.2326 23 1 -0.3633 0.0920 1.0235 24 1 -0.3633 0.8404 -0.5915 25 1 -0.3633 -0.9324 -0.4320 26 1 -0.0098 3.0646 1.4843 27 1 0.7463 -2.1223 1.3560 28 1 2.2420 -1.5472 2.1368 29 1 2.3368 -3.9770 2.0983 30 1 3.4836 -3.3842 0.8695 31 1 0.6567 -4.4245 0.4162 32 1 2.1761 -5.1618 -0.1374 33 1 1.1090 -5.1456 -2.3599 34 1 0.9375 -3.9218 -4.4827 35 1 1.9026 -0.2971 -2.4539 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132321368.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:06 Heat of formation + Delta-G solvation = -8.859504 kcal Electronic energy + Delta-G solvation = -18535.754110 eV Core-core repulsion = 15641.199619 eV Total energy + Delta-G solvation = -2894.554491 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.46614 -39.66134 -36.10157 -34.56732 -31.99949 -30.04024 -29.56655 -27.66909 -25.95379 -23.71092 -22.48004 -22.23067 -20.62965 -18.89128 -16.81997 -16.70524 -16.09494 -15.37954 -15.15713 -14.87681 -14.23813 -13.89278 -13.71748 -13.24509 -13.10603 -12.66652 -12.35297 -12.25808 -12.03711 -11.71137 -11.04990 -10.95034 -10.84249 -10.82648 -10.54480 -10.39390 -10.30688 -10.07042 -9.85718 -9.63385 -8.60260 -8.40418 -8.05504 -6.78562 -5.73380 -3.20552 1.55040 1.65072 3.38350 3.45062 3.45636 3.95432 4.48980 4.65624 4.93626 5.06559 5.25184 5.32029 5.37656 5.43563 5.56568 5.61656 5.72297 5.94058 6.00684 6.08849 6.16916 6.27214 6.33302 6.40349 6.52623 6.58639 6.63522 6.80552 6.92884 6.96083 7.12077 7.35740 7.41337 7.74259 7.80440 8.38379 9.22164 9.84782 10.34391 11.31197 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021545 B = 0.008307 C = 0.006533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.312389 B = 3369.881366 C = 4284.762201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.591 5.591 3 C -0.260 4.260 4 H 0.069 0.931 5 C 0.005 3.995 6 N -0.904 5.904 7 Si 0.903 3.097 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.209 3.791 12 H 0.078 0.922 13 C -0.127 4.127 14 C -0.120 4.120 15 C -0.074 4.074 16 C -0.091 4.091 17 C -0.105 4.105 18 C -0.165 4.165 19 C 0.080 3.920 20 F -0.148 7.148 21 C -0.123 4.123 22 C -0.045 4.045 23 H 0.031 0.969 24 H 0.038 0.962 25 H -0.002 1.002 26 H 0.252 0.748 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.969 -12.726 -3.861 13.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.312 5.312 3 C -0.389 4.389 4 H 0.087 0.913 5 C -0.194 4.194 6 N -0.548 5.548 7 Si 0.733 3.267 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.100 3.900 12 H 0.096 0.904 13 C -0.166 4.166 14 C -0.158 4.158 15 C -0.111 4.111 16 C -0.092 4.092 17 C -0.123 4.123 18 C -0.184 4.184 19 C 0.061 3.939 20 F -0.126 7.126 21 C -0.142 4.142 22 C -0.047 4.047 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.016 0.984 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.846 -12.513 -3.822 13.214 hybrid contribution 0.165 1.127 -0.474 1.234 sum 2.011 -11.387 -4.296 12.335 Atomic orbital electron populations 1.20721 0.82512 0.95352 0.99336 1.43966 1.01776 0.99763 1.85677 1.19226 0.98486 0.85417 1.35772 0.91344 1.25009 0.97893 0.98460 0.97992 1.70074 1.19559 1.27197 1.37982 0.86279 0.78780 0.84207 0.77412 1.21502 1.21758 1.20458 1.19354 0.96327 0.85812 0.88495 0.90399 1.22120 1.01058 0.93850 0.99615 1.21596 0.99650 0.96852 0.97684 1.20413 1.00881 0.97275 0.92527 1.19730 1.00905 0.93561 0.95016 1.20871 1.00436 0.99437 0.91538 1.20895 1.05548 0.92659 0.99288 1.17709 1.04087 0.90310 0.81807 1.91454 1.94072 1.80316 1.46806 1.21374 1.00329 1.01976 0.90511 1.20590 0.95308 0.92430 0.96413 0.95050 0.94276 0.98365 0.93748 0.91884 0.91492 0.92113 0.91963 0.90990 0.91450 0.85962 0.85700 0.83815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.07 7.65 59.85 0.46 4.53 16 2 N -0.59 -14.34 1.93 -174.82 -0.34 -14.67 16 3 C -0.26 -6.94 9.52 -15.06 -0.14 -7.08 16 4 H 0.07 1.79 7.82 -52.48 -0.41 1.38 16 5 C 0.01 0.15 5.10 -17.43 -0.09 0.06 16 6 N -0.90 -26.06 10.73 55.49 0.60 -25.46 16 7 Si 0.90 21.75 29.57 -169.99 -5.03 16.73 16 8 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 C 0.21 4.18 2.62 -69.08 -0.18 4.00 16 12 H 0.08 1.58 7.85 -51.93 -0.41 1.18 16 13 C -0.13 -2.25 5.36 -26.54 -0.14 -2.39 16 14 C -0.12 -1.63 5.97 -26.70 -0.16 -1.79 16 15 C -0.07 -0.95 5.67 -28.05 -0.16 -1.11 16 16 C -0.09 -1.41 5.74 -104.60 -0.60 -2.01 16 17 C -0.10 -1.45 9.60 -39.46 -0.38 -1.82 16 18 C -0.16 -2.43 10.03 -39.62 -0.40 -2.83 16 19 C 0.08 1.40 7.30 -39.52 -0.29 1.11 16 20 F -0.15 -2.64 17.27 2.25 0.04 -2.60 16 21 C -0.12 -2.36 9.00 -39.38 -0.35 -2.71 16 22 C -0.05 -0.82 4.52 -104.62 -0.47 -1.30 16 23 H 0.03 0.83 7.33 -51.93 -0.38 0.45 16 24 H 0.04 1.04 7.36 -51.93 -0.38 0.66 16 25 H 0.00 -0.05 7.27 -51.93 -0.38 -0.43 16 26 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.06 1.18 7.37 -51.93 -0.38 0.80 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.72 8.12 -51.93 -0.42 0.29 16 33 H 0.12 1.31 8.05 -52.49 -0.42 0.89 16 34 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 35 H 0.14 3.07 7.54 -52.48 -0.40 2.68 16 LS Contribution 286.53 15.07 4.32 4.32 Total: -1.00 -28.57 286.53 -8.15 -36.71 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -4.83 Total: -1.67 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -2.91 Total: -13.36 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.26 Total: -40.14 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.04 Total: -2.60 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.57 -8.15 -36.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132321368.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.854 kcal (2) G-P(sol) polarization free energy of solvation -28.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds