Wall clock time and date at job start Thu Apr 9 2020 12:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36935 * 120.00057 * 2 1 4 4 H 1.08007 * 119.99523 * 203.12998 * 3 2 1 5 5 C 1.38808 * 120.00237 * 23.13506 * 3 2 1 6 6 N 1.31622 * 119.99785 * 13.21991 * 5 3 2 7 7 Si 1.86799 * 120.00075 * 193.22229 * 5 3 2 8 8 H 1.48501 * 109.46900 * 89.99963 * 7 5 3 9 9 H 1.48509 * 109.46937 * 209.99640 * 7 5 3 10 10 H 1.48500 * 109.47171 * 329.99878 * 7 5 3 11 11 C 1.46507 * 119.99950 * 180.02562 * 2 1 3 12 12 H 1.08992 * 109.21776 * 179.44309 * 11 2 1 13 13 C 1.53047 * 108.80116 * 299.30613 * 11 2 1 14 14 C 1.53321 * 108.13589 * 171.49326 * 13 11 2 15 15 C 1.52739 * 108.38813 * 289.89341 * 14 13 11 16 16 C 1.50640 * 110.58281 * 51.19699 * 15 14 13 17 17 C 1.38920 * 117.72648 * 162.22437 * 16 15 14 18 18 C 1.37889 * 120.57984 * 179.15913 * 17 16 15 19 19 C 1.38491 * 119.74318 * 0.24436 * 18 17 16 20 20 F 1.35100 * 120.14036 * 180.11664 * 19 18 17 21 21 C 1.38149 * 119.71722 * 0.13778 * 19 18 17 22 22 C 1.37684 * 122.55033 * 342.16341 * 16 15 14 23 23 H 1.08998 * 109.46788 * 275.13658 * 1 2 3 24 24 H 1.08998 * 109.47029 * 35.13814 * 1 2 3 25 25 H 1.08999 * 109.47222 * 155.14124 * 1 2 3 26 26 H 0.96999 * 119.99857 * 179.97438 * 6 5 3 27 27 H 1.09005 * 110.05760 * 51.70575 * 13 11 2 28 28 H 1.08997 * 109.56860 * 290.99976 * 13 11 2 29 29 H 1.08997 * 109.68499 * 170.16785 * 14 13 11 30 30 H 1.09003 * 109.70595 * 49.63209 * 14 13 11 31 31 H 1.08993 * 109.25283 * 290.90885 * 15 14 13 32 32 H 1.09001 * 109.24727 * 171.47872 * 15 14 13 33 33 H 1.08001 * 119.71290 * 359.43906 * 17 16 15 34 34 H 1.08006 * 120.12774 * 180.25972 * 18 17 16 35 35 H 1.08009 * 119.73715 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1647 1.2234 -0.3674 5 6 1.5395 2.3397 0.4723 6 7 0.4164 2.2584 1.1539 7 14 2.3120 4.0078 0.1404 8 1 1.7867 4.5510 -1.1380 9 1 1.9765 4.9379 1.2485 10 1 3.7867 3.8606 0.0470 11 6 2.1976 -1.2688 -0.0006 12 1 3.2682 -1.0649 -0.0105 13 6 1.8300 -2.0511 1.2625 14 6 2.4316 -3.4565 1.1453 15 6 1.6677 -4.2190 0.0646 16 6 1.5975 -3.4106 -1.2046 17 6 1.2833 -4.0800 -2.3807 18 6 1.1864 -3.3948 -3.5734 19 6 1.4090 -2.0282 -3.6007 20 9 1.3139 -1.3485 -4.7644 21 6 1.7293 -1.3630 -2.4330 22 6 1.8300 -2.0538 -1.2326 23 1 -0.3633 0.0920 1.0235 24 1 -0.3633 0.8404 -0.5915 25 1 -0.3633 -0.9324 -0.4320 26 1 -0.0098 3.0646 1.4843 27 1 0.7463 -2.1223 1.3560 28 1 2.2420 -1.5472 2.1368 29 1 2.3368 -3.9770 2.0983 30 1 3.4836 -3.3842 0.8695 31 1 0.6567 -4.4245 0.4162 32 1 2.1761 -5.1618 -0.1374 33 1 1.1090 -5.1456 -2.3599 34 1 0.9375 -3.9218 -4.4827 35 1 1.9026 -0.2971 -2.4539 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132321368.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:05 Heat of formation + Delta-G solvation = -22.912399 kcal Electronic energy + Delta-G solvation = -18536.363489 eV Core-core repulsion = 15641.199619 eV Total energy + Delta-G solvation = -2895.163870 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.83215 -40.99344 -37.69808 -36.04302 -33.72313 -31.69666 -30.84122 -29.11335 -28.02413 -25.30258 -23.92202 -23.50790 -22.16784 -20.24163 -18.83978 -18.06938 -17.46151 -16.97405 -16.52915 -16.46339 -15.66464 -15.54997 -15.22431 -14.64660 -14.44288 -14.17338 -14.00718 -13.60105 -13.48716 -13.21364 -12.85291 -12.78512 -12.52024 -12.22024 -12.20574 -12.06484 -12.03307 -11.69747 -11.36530 -11.14932 -10.67591 -9.75652 -9.31570 -8.80152 -7.84758 -5.32712 0.27296 0.37877 1.42805 1.44812 1.52733 2.46894 2.69616 3.28598 3.35561 3.63854 3.81262 3.90340 4.09873 4.20302 4.25173 4.31585 4.47527 4.62189 4.69708 4.79650 4.83538 5.01033 5.07853 5.12623 5.17089 5.22690 5.25698 5.31202 5.40579 5.52026 5.57894 5.64004 5.69190 5.79654 6.08958 6.31323 7.13004 7.84431 8.29562 9.18575 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021545 B = 0.008307 C = 0.006533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.312389 B = 3369.881366 C = 4284.762201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.190 3.810 2 N -0.604 5.604 3 C -0.262 4.262 4 H 0.067 0.933 5 C -0.050 4.050 6 N -0.935 5.935 7 Si 0.964 3.036 8 H -0.291 1.291 9 H -0.293 1.293 10 H -0.268 1.268 11 C 0.205 3.795 12 H 0.065 0.935 13 C -0.120 4.120 14 C -0.111 4.111 15 C -0.072 4.072 16 C -0.087 4.087 17 C -0.090 4.090 18 C -0.152 4.152 19 C 0.061 3.939 20 F -0.156 7.156 21 C -0.148 4.148 22 C -0.066 4.066 23 H 0.007 0.993 24 H 0.006 0.994 25 H 0.018 0.982 26 H 0.248 0.752 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.171 0.829 34 H 0.158 0.842 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.423 -16.146 -4.385 16.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.325 5.325 3 C -0.392 4.392 4 H 0.085 0.915 5 C -0.245 4.245 6 N -0.581 5.581 7 Si 0.793 3.207 8 H -0.218 1.218 9 H -0.219 1.219 10 H -0.193 1.193 11 C 0.099 3.901 12 H 0.083 0.917 13 C -0.160 4.160 14 C -0.149 4.149 15 C -0.109 4.109 16 C -0.088 4.088 17 C -0.107 4.107 18 C -0.171 4.171 19 C 0.042 3.958 20 F -0.135 7.135 21 C -0.168 4.168 22 C -0.068 4.068 23 H 0.026 0.974 24 H 0.025 0.975 25 H 0.036 0.964 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.125 0.875 33 H 0.188 0.812 34 H 0.176 0.824 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.331 -15.966 -4.356 16.713 hybrid contribution 0.052 2.094 -0.371 2.127 sum 2.383 -13.872 -4.727 14.848 Atomic orbital electron populations 1.20313 0.83093 0.94806 0.97245 1.44098 1.01673 1.00920 1.85848 1.19507 0.98457 0.86787 1.34487 0.91487 1.25720 0.98684 1.01600 0.98501 1.70222 1.20948 1.27504 1.39470 0.85312 0.78500 0.80212 0.76721 1.21791 1.21902 1.19267 1.19496 0.95169 0.84644 0.90820 0.91721 1.21969 1.00383 0.96430 0.97200 1.21555 0.99655 0.93984 0.99729 1.20526 1.01935 0.97946 0.90449 1.20095 0.99166 0.92239 0.97302 1.21363 0.97869 1.01500 0.89984 1.21300 1.03453 0.91070 1.01235 1.17923 1.05260 0.91690 0.80927 1.91426 1.94258 1.80815 1.47030 1.21154 1.02890 1.00438 0.92269 1.20328 0.97813 0.93936 0.94694 0.97435 0.97518 0.96398 0.94308 0.93093 0.93498 0.89497 0.91519 0.89703 0.87547 0.81199 0.82439 0.87728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.83 7.65 127.77 0.98 10.81 16 2 N -0.60 -30.63 1.93 -707.00 -1.37 -31.99 16 3 C -0.26 -14.64 9.52 84.03 0.80 -13.84 16 4 H 0.07 3.67 7.82 -2.91 -0.02 3.65 16 5 C -0.05 -2.84 5.10 84.86 0.43 -2.41 16 6 N -0.93 -56.25 10.73 21.65 0.23 -56.02 16 7 Si 0.96 46.24 29.57 68.60 2.03 48.26 16 8 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 9 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 C 0.21 8.41 2.62 44.24 0.12 8.53 16 12 H 0.06 2.74 7.85 -2.39 -0.02 2.72 16 13 C -0.12 -4.22 5.36 30.72 0.16 -4.06 16 14 C -0.11 -2.67 5.97 30.61 0.18 -2.49 16 15 C -0.07 -1.48 5.67 29.74 0.17 -1.31 16 16 C -0.09 -2.38 5.74 -19.85 -0.11 -2.49 16 17 C -0.09 -2.00 9.60 22.35 0.21 -1.78 16 18 C -0.15 -3.90 10.03 22.25 0.22 -3.67 16 19 C 0.06 2.08 7.30 22.31 0.16 2.25 16 20 F -0.16 -5.60 17.27 44.97 0.78 -4.82 16 21 C -0.15 -5.83 9.00 22.40 0.20 -5.63 16 22 C -0.07 -2.37 4.52 -19.86 -0.09 -2.46 16 23 H 0.01 0.41 7.33 -2.39 -0.02 0.40 16 24 H 0.01 0.35 7.36 -2.39 -0.02 0.33 16 25 H 0.02 0.82 7.27 -2.39 -0.02 0.80 16 26 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 27 H 0.05 1.89 7.37 -2.38 -0.02 1.87 16 28 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 1.57 8.09 -2.39 -0.02 1.55 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.11 1.49 8.12 -2.39 -0.02 1.47 16 33 H 0.17 2.29 8.05 -2.91 -0.02 2.27 16 34 H 0.16 3.03 8.06 -2.91 -0.02 3.00 16 35 H 0.10 4.84 7.54 -2.91 -0.02 4.82 16 Total: -1.00 -65.71 286.53 6.18 -59.53 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: 1.07 Total: 3.61 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: 3.44 Total: -18.57 kcal Atomic # 7 Polarization: -86.88 SS G_CDS: -1.13 Total: -88.01 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 0.78 Total: -4.82 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Total: -65.71 6.18 -59.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132321368.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.616 kcal (2) G-P(sol) polarization free energy of solvation -65.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds