Wall clock time and date at job start Thu Apr 9 2020 12:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35498 * 126.97677 * 2 1 4 4 N 1.30520 * 107.30471 * 179.84156 * 3 2 1 5 5 N 1.28601 * 109.66953 * 0.43649 * 4 3 2 6 6 C 1.30518 * 109.67809 * 359.72537 * 5 4 3 7 7 C 1.50702 * 126.34908 * 180.02562 * 6 5 4 8 8 N 1.46892 * 109.47028 * 269.95813 * 7 6 5 9 9 C 1.46902 * 110.99868 * 190.00084 * 8 7 6 10 10 C 1.50699 * 109.47211 * 168.99570 * 9 8 7 11 11 H 1.07999 * 119.99857 * 354.95452 * 10 9 8 12 12 C 1.37883 * 120.00075 * 174.95993 * 10 9 8 13 13 N 1.31510 * 119.99787 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99938 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47249 * 90.00003 * 14 12 10 16 16 H 1.48494 * 109.46988 * 210.00054 * 14 12 10 17 17 H 1.48501 * 109.47097 * 330.00115 * 14 12 10 18 18 C 1.46903 * 111.00229 * 66.04580 * 8 7 6 19 19 C 1.53004 * 109.46902 * 62.03887 * 18 8 7 20 20 C 1.47197 * 109.47111 * 179.59695 * 19 18 8 21 21 N 6.77701 * 134.82006 * 212.70578 * 2 1 3 22 22 H 1.09002 * 109.46838 * 269.68061 * 1 2 3 23 23 H 1.09004 * 109.47088 * 149.68590 * 1 2 3 24 24 H 1.09002 * 109.47481 * 29.67980 * 1 2 3 25 25 H 1.08000 * 126.34760 * 359.97438 * 3 2 1 26 26 H 1.08995 * 109.46786 * 29.95863 * 7 6 5 27 27 H 1.08998 * 109.46763 * 149.95903 * 7 6 5 28 28 H 1.09000 * 109.47165 * 288.99112 * 9 8 7 29 29 H 1.08995 * 109.47322 * 48.99034 * 9 8 7 30 30 H 0.97001 * 119.99892 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.47217 * 182.03773 * 18 8 7 32 32 H 1.08994 * 109.46880 * 302.04228 * 18 8 7 33 33 H 1.08998 * 109.47254 * 299.59988 * 19 18 8 34 34 H 1.09000 * 109.46991 * 59.60033 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0825 0.0000 4 7 3.5091 0.6431 0.0034 5 7 3.5090 -0.6429 -0.0036 6 6 2.2801 -1.0824 -0.0060 7 6 1.8477 -2.5260 -0.0134 8 7 1.7065 -2.9877 -1.4007 9 6 1.0626 -4.3071 -1.4535 10 6 0.6903 -4.6277 -2.8781 11 1 0.8352 -3.8898 -3.6533 12 6 0.1645 -5.8632 -3.1919 13 7 -0.0116 -6.7618 -2.2480 14 14 -0.2977 -6.2604 -4.9577 15 1 0.8709 -6.8573 -5.6530 16 1 -1.4263 -7.2253 -4.9689 17 1 -0.7050 -5.0141 -5.6551 18 6 3.0070 -3.0089 -2.0836 19 6 3.9388 -3.9944 -1.3754 20 6 5.2387 -4.0228 -2.0654 21 7 6.2420 -4.0450 -2.5974 22 1 -0.3633 -0.0057 1.0277 23 1 -0.3633 -0.8872 -0.5187 24 1 -0.3634 0.8928 -0.5088 25 1 1.9701 2.1170 -0.0004 26 1 2.5963 -3.1320 0.4968 27 1 0.8912 -2.6214 0.5004 28 1 1.7526 -5.0633 -1.0794 29 1 0.1642 -4.2979 -0.8364 30 1 -0.3811 -7.6311 -2.4688 31 1 2.8686 -3.3197 -3.1191 32 1 3.4464 -2.0117 -2.0591 33 1 4.0828 -3.6796 -0.3419 34 1 3.4960 -4.9902 -1.3936 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132798305.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:07 Heat of formation + Delta-G solvation = 115.258961 kcal Electronic energy + Delta-G solvation = -18027.718427 eV Core-core repulsion = 15190.758829 eV Total energy + Delta-G solvation = -2836.959598 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.128 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.91727 -37.89595 -35.86813 -34.87072 -32.85120 -31.36212 -30.09496 -27.79137 -27.29537 -25.50120 -23.63268 -22.17659 -21.07062 -19.72553 -17.43786 -16.93542 -16.41438 -16.23083 -15.31154 -14.94290 -14.77594 -14.27675 -13.97884 -13.62750 -13.41284 -13.23707 -12.75702 -12.30429 -12.12951 -11.97807 -11.62473 -11.36316 -11.32415 -11.17367 -10.84874 -10.70345 -10.24928 -10.19186 -10.06769 -9.94179 -9.44185 -9.04779 -8.57308 -7.58567 -6.17343 -4.19302 1.95802 2.64487 3.05412 3.22062 3.24969 3.26605 3.32464 3.35473 4.28779 4.42390 4.50804 4.67371 4.70796 4.92596 5.05084 5.18567 5.19676 5.40609 5.53076 5.63208 5.67979 5.77513 5.97751 6.09918 6.28047 6.30169 6.64002 6.96865 6.97967 7.11629 7.59202 7.75798 7.93171 8.04100 8.28419 8.88397 8.91868 9.46488 10.92802 Molecular weight = 249.13amu Principal moments of inertia in cm(-1) A = 0.018887 B = 0.007048 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.128692 B = 3971.569074 C = 4975.499826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.467 5.467 3 C 0.137 3.863 4 N -0.302 5.302 5 N -0.298 5.298 6 C 0.201 3.799 7 C 0.125 3.875 8 N -0.525 5.525 9 C 0.187 3.813 10 C -0.512 4.512 11 H 0.064 0.936 12 C 0.060 3.940 13 N -0.895 5.895 14 Si 0.895 3.105 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.072 3.928 19 C -0.070 4.070 20 C 0.228 3.772 21 N -0.462 5.462 22 H 0.078 0.922 23 H 0.104 0.896 24 H 0.088 0.912 25 H 0.213 0.787 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.010 0.990 29 H 0.031 0.969 30 H 0.263 0.737 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.979 10.838 6.693 13.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.158 5.158 3 C -0.151 4.151 4 N -0.142 5.142 5 N -0.139 5.139 6 C -0.068 4.068 7 C -0.005 4.005 8 N -0.249 5.249 9 C 0.063 3.937 10 C -0.550 4.550 11 H 0.083 0.917 12 C -0.142 4.142 13 N -0.534 5.534 14 Si 0.723 3.277 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.058 4.058 19 C -0.111 4.111 20 C -0.089 4.089 21 N -0.140 5.140 22 H 0.097 0.903 23 H 0.123 0.877 24 H 0.107 0.893 25 H 0.229 0.771 26 H 0.087 0.913 27 H 0.109 0.891 28 H 0.028 0.972 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.401 10.962 5.696 12.360 hybrid contribution -1.759 -0.720 -0.297 1.924 sum -2.159 10.241 5.399 11.777 Atomic orbital electron populations 1.22150 0.75219 1.06035 1.03753 1.46125 1.09336 1.06647 1.53680 1.26301 0.87477 0.94843 1.06489 1.74200 1.18164 1.03655 1.18173 1.74252 1.17276 1.02969 1.19429 1.24987 0.86889 0.92510 1.02368 1.20524 1.01477 0.84795 0.93744 1.62437 1.19838 1.32081 1.10552 1.19903 0.93697 0.81719 0.98399 1.21078 1.41872 0.98846 0.93243 0.91737 1.24936 0.95698 0.96157 0.97406 1.69925 1.45066 1.06078 1.32373 0.86540 0.78172 0.78276 0.84743 1.20634 1.21238 1.19788 1.22040 0.87022 0.97147 0.99587 1.20139 0.86066 1.05507 0.99426 1.29133 0.94381 0.92217 0.93175 1.81109 1.12611 1.09965 1.10281 0.90341 0.87741 0.89339 0.77051 0.91265 0.89112 0.97218 0.95064 0.92739 0.88996 0.91275 0.87961 0.86191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 10.89 59.85 0.65 1.22 16 2 N -0.47 -5.63 3.15 -122.68 -0.39 -6.02 16 3 C 0.14 1.65 12.74 -89.94 -1.15 0.51 16 4 N -0.30 -4.93 12.21 29.69 0.36 -4.57 16 5 N -0.30 -5.12 11.45 32.80 0.38 -4.74 16 6 C 0.20 2.98 6.65 -154.99 -1.03 1.95 16 7 C 0.13 1.81 4.93 -4.98 -0.02 1.79 16 8 N -0.53 -9.21 4.69 -237.52 -1.11 -10.32 16 9 C 0.19 3.97 4.53 -4.98 -0.02 3.94 16 10 C -0.51 -12.58 8.40 -34.44 -0.29 -12.86 16 11 H 0.06 1.61 7.37 -52.49 -0.39 1.22 16 12 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 13 N -0.90 -24.03 13.29 55.43 0.74 -23.29 16 14 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 C 0.07 1.26 4.94 -3.82 -0.02 1.24 16 19 C -0.07 -1.11 5.05 -29.52 -0.15 -1.26 16 20 C 0.23 4.06 15.43 -20.77 -0.32 3.74 16 21 N -0.46 -9.13 18.54 42.15 0.78 -8.35 16 22 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.10 0.98 7.81 -51.93 -0.41 0.57 16 24 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.21 1.54 8.06 -52.49 -0.42 1.11 16 26 H 0.07 0.96 6.07 -51.93 -0.32 0.65 16 27 H 0.09 1.17 7.63 -51.93 -0.40 0.77 16 28 H 0.01 0.22 6.01 -51.93 -0.31 -0.09 16 29 H 0.03 0.70 7.91 -51.93 -0.41 0.29 16 30 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 31 H 0.09 1.77 6.98 -51.93 -0.36 1.40 16 32 H 0.07 1.24 6.64 -51.93 -0.34 0.89 16 33 H 0.10 1.46 6.34 -51.93 -0.33 1.13 16 34 H 0.12 2.01 6.28 -51.93 -0.33 1.69 16 LS Contribution 294.89 15.07 4.44 4.44 Total: -1.00 -31.23 294.89 -6.26 -37.49 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -3.99 Total: -1.58 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -2.45 Total: 1.71 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.76 Total: -57.28 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.23 -6.26 -37.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132798305.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.749 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds