Wall clock time and date at job start Thu Apr 9 2020 12:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35498 * 126.97677 * 2 1 4 4 N 1.30520 * 107.30471 * 179.84156 * 3 2 1 5 5 N 1.28601 * 109.66953 * 0.43649 * 4 3 2 6 6 C 1.30518 * 109.67809 * 359.72537 * 5 4 3 7 7 C 1.50702 * 126.34908 * 180.02562 * 6 5 4 8 8 N 1.46892 * 109.47028 * 269.95813 * 7 6 5 9 9 C 1.46902 * 110.99868 * 190.00084 * 8 7 6 10 10 C 1.50699 * 109.47211 * 168.99570 * 9 8 7 11 11 H 1.07999 * 119.99857 * 354.95452 * 10 9 8 12 12 C 1.37883 * 120.00075 * 174.95993 * 10 9 8 13 13 N 1.31510 * 119.99787 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99938 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47249 * 90.00003 * 14 12 10 16 16 H 1.48494 * 109.46988 * 210.00054 * 14 12 10 17 17 H 1.48501 * 109.47097 * 330.00115 * 14 12 10 18 18 C 1.46903 * 111.00229 * 66.04580 * 8 7 6 19 19 C 1.53004 * 109.46902 * 62.03887 * 18 8 7 20 20 C 1.47197 * 109.47111 * 179.59695 * 19 18 8 21 21 N 6.77701 * 134.82006 * 212.70578 * 2 1 3 22 22 H 1.09002 * 109.46838 * 269.68061 * 1 2 3 23 23 H 1.09004 * 109.47088 * 149.68590 * 1 2 3 24 24 H 1.09002 * 109.47481 * 29.67980 * 1 2 3 25 25 H 1.08000 * 126.34760 * 359.97438 * 3 2 1 26 26 H 1.08995 * 109.46786 * 29.95863 * 7 6 5 27 27 H 1.08998 * 109.46763 * 149.95903 * 7 6 5 28 28 H 1.09000 * 109.47165 * 288.99112 * 9 8 7 29 29 H 1.08995 * 109.47322 * 48.99034 * 9 8 7 30 30 H 0.97001 * 119.99892 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.47217 * 182.03773 * 18 8 7 32 32 H 1.08994 * 109.46880 * 302.04228 * 18 8 7 33 33 H 1.08998 * 109.47254 * 299.59988 * 19 18 8 34 34 H 1.09000 * 109.46991 * 59.60033 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0825 0.0000 4 7 3.5091 0.6431 0.0034 5 7 3.5090 -0.6429 -0.0036 6 6 2.2801 -1.0824 -0.0060 7 6 1.8477 -2.5260 -0.0134 8 7 1.7065 -2.9877 -1.4007 9 6 1.0626 -4.3071 -1.4535 10 6 0.6903 -4.6277 -2.8781 11 1 0.8352 -3.8898 -3.6533 12 6 0.1645 -5.8632 -3.1919 13 7 -0.0116 -6.7618 -2.2480 14 14 -0.2977 -6.2604 -4.9577 15 1 0.8709 -6.8573 -5.6530 16 1 -1.4263 -7.2253 -4.9689 17 1 -0.7050 -5.0141 -5.6551 18 6 3.0070 -3.0089 -2.0836 19 6 3.9388 -3.9944 -1.3754 20 6 5.2387 -4.0228 -2.0654 21 7 6.2420 -4.0450 -2.5974 22 1 -0.3633 -0.0057 1.0277 23 1 -0.3633 -0.8872 -0.5187 24 1 -0.3634 0.8928 -0.5088 25 1 1.9701 2.1170 -0.0004 26 1 2.5963 -3.1320 0.4968 27 1 0.8912 -2.6214 0.5004 28 1 1.7526 -5.0633 -1.0794 29 1 0.1642 -4.2979 -0.8364 30 1 -0.3811 -7.6311 -2.4688 31 1 2.8686 -3.3197 -3.1191 32 1 3.4464 -2.0117 -2.0591 33 1 4.0828 -3.6796 -0.3419 34 1 3.4960 -4.9902 -1.3936 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132798305.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:07 Heat of formation + Delta-G solvation = 95.823011 kcal Electronic energy + Delta-G solvation = -18028.561233 eV Core-core repulsion = 15190.758829 eV Total energy + Delta-G solvation = -2837.802404 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.128 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.94829 -39.33329 -37.36649 -35.81381 -34.71938 -32.58723 -31.53489 -29.14964 -28.26502 -26.88042 -25.29263 -23.16211 -22.41522 -20.99529 -18.90122 -18.24427 -17.76799 -17.41930 -16.71470 -16.29097 -16.06450 -15.71752 -15.29082 -15.02841 -14.66236 -14.15960 -14.09675 -13.62574 -13.48043 -13.44008 -13.00257 -12.93767 -12.75046 -12.64224 -12.47720 -12.33388 -11.93358 -11.57265 -11.28875 -11.18660 -10.93181 -10.52460 -10.16643 -9.05042 -8.12631 -6.18164 0.96490 1.44713 1.48584 1.55932 1.74988 1.78337 1.80904 1.96992 2.46266 3.00066 3.22726 3.33548 3.62459 3.85208 4.02227 4.12863 4.17745 4.29970 4.44839 4.52639 4.64837 4.72670 4.83110 4.90137 5.06592 5.19886 5.31515 5.36546 5.42030 5.73971 6.07982 6.11421 6.24037 6.56253 6.60551 6.96701 7.50489 7.85943 8.96712 Molecular weight = 249.13amu Principal moments of inertia in cm(-1) A = 0.018887 B = 0.007048 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.128692 B = 3971.569074 C = 4975.499826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.465 5.465 3 C 0.158 3.842 4 N -0.352 5.352 5 N -0.332 5.332 6 C 0.189 3.811 7 C 0.129 3.871 8 N -0.525 5.525 9 C 0.201 3.799 10 C -0.515 4.515 11 H 0.057 0.943 12 C 0.016 3.984 13 N -0.924 5.924 14 Si 0.946 3.054 15 H -0.283 1.283 16 H -0.285 1.285 17 H -0.269 1.269 18 C 0.081 3.919 19 C -0.057 4.057 20 C 0.245 3.755 21 N -0.495 5.495 22 H 0.102 0.898 23 H 0.089 0.911 24 H 0.117 0.883 25 H 0.259 0.741 26 H 0.077 0.923 27 H 0.108 0.892 28 H 0.002 0.998 29 H 0.023 0.977 30 H 0.262 0.738 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.125 0.875 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.079 12.225 7.148 14.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.155 5.155 3 C -0.130 4.130 4 N -0.191 5.191 5 N -0.173 5.173 6 C -0.081 4.081 7 C -0.001 4.001 8 N -0.249 5.249 9 C 0.076 3.924 10 C -0.554 4.554 11 H 0.075 0.925 12 C -0.183 4.183 13 N -0.565 5.565 14 Si 0.773 3.227 15 H -0.209 1.209 16 H -0.211 1.211 17 H -0.194 1.194 18 C -0.049 4.049 19 C -0.099 4.099 20 C -0.072 4.072 21 N -0.174 5.174 22 H 0.120 0.880 23 H 0.107 0.893 24 H 0.135 0.865 25 H 0.275 0.725 26 H 0.094 0.906 27 H 0.127 0.873 28 H 0.019 0.981 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.142 0.858 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.512 12.366 6.150 13.894 hybrid contribution -1.466 -1.034 -0.406 1.839 sum -2.978 11.332 5.745 13.050 Atomic orbital electron populations 1.22443 0.72747 1.06742 1.05563 1.46366 1.10748 1.05811 1.52569 1.27149 0.86323 0.96461 1.03116 1.74111 1.20692 1.03519 1.20786 1.74143 1.18777 1.03814 1.20561 1.24841 0.87029 0.93007 1.03180 1.20530 1.02751 0.85016 0.91795 1.62259 1.19797 1.29956 1.12869 1.19579 0.93373 0.83194 0.96283 1.21389 1.40815 0.98447 0.94759 0.92486 1.25549 0.96126 0.96391 1.00233 1.70004 1.46346 1.06377 1.33758 0.85739 0.77653 0.78021 0.81328 1.20947 1.21088 1.19374 1.21853 0.87276 0.97191 0.98595 1.20105 0.84750 1.04833 1.00198 1.29369 0.94278 0.91172 0.92363 1.81119 1.13766 1.11100 1.11403 0.87955 0.89251 0.86479 0.72482 0.90565 0.87339 0.98053 0.95894 0.92861 0.91151 0.91484 0.85752 0.86637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 10.89 127.77 1.39 2.23 16 2 N -0.47 -9.95 3.15 -542.05 -1.71 -11.66 16 3 C 0.16 3.36 12.74 180.11 2.30 5.65 16 4 N -0.35 -11.00 12.21 -59.99 -0.73 -11.73 16 5 N -0.33 -11.07 11.45 -50.15 -0.57 -11.64 16 6 C 0.19 5.30 6.65 137.98 0.92 6.22 16 7 C 0.13 3.54 4.93 85.56 0.42 3.96 16 8 N -0.53 -17.94 4.69 -905.39 -4.24 -22.19 16 9 C 0.20 8.42 4.53 85.56 0.39 8.81 16 10 C -0.52 -25.18 8.40 25.60 0.21 -24.97 16 11 H 0.06 2.83 7.37 -2.91 -0.02 2.81 16 12 C 0.02 0.82 5.46 84.66 0.46 1.28 16 13 N -0.92 -49.53 13.29 21.45 0.28 -49.25 16 14 Si 0.95 41.32 29.54 68.60 2.03 43.34 16 15 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 16 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 17 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 18 C 0.08 2.80 4.94 86.30 0.43 3.22 16 19 C -0.06 -1.79 5.05 28.79 0.15 -1.65 16 20 C 0.24 8.63 15.43 89.44 1.38 10.01 16 21 N -0.50 -19.55 18.54 20.00 0.37 -19.17 16 22 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.09 1.46 7.81 -2.38 -0.02 1.44 16 24 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.26 2.57 8.06 -2.91 -0.02 2.55 16 26 H 0.08 1.99 6.07 -2.39 -0.01 1.98 16 27 H 0.11 2.58 7.63 -2.39 -0.02 2.56 16 28 H 0.00 0.08 6.01 -2.39 -0.01 0.06 16 29 H 0.02 1.01 7.91 -2.39 -0.02 0.99 16 30 H 0.26 13.54 8.31 -92.71 -0.77 12.77 16 31 H 0.07 2.72 6.98 -2.39 -0.02 2.70 16 32 H 0.07 2.38 6.64 -2.39 -0.02 2.36 16 33 H 0.12 3.38 6.34 -2.39 -0.02 3.37 16 34 H 0.12 3.82 6.28 -2.39 -0.01 3.81 16 Total: -1.00 -67.20 294.89 4.59 -62.61 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.12 Total: 4.91 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 8.04 Total: 14.77 kcal Atomic # 7 Polarization: -119.04 SS G_CDS: -6.60 Total: -125.64 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Total: -67.20 4.59 -62.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132798305.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.437 kcal (2) G-P(sol) polarization free energy of solvation -67.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds