Wall clock time and date at job start Thu Apr 9 2020 12:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47263 * 2 1 4 4 C 1.36798 * 119.99807 * 82.97951 * 3 2 1 5 5 H 1.08001 * 119.99753 * 171.41960 * 4 3 2 6 6 C 1.39097 * 120.00081 * 351.41409 * 4 3 2 7 7 N 1.31331 * 120.00179 * 1.40095 * 6 4 3 8 8 Si 1.86803 * 120.00136 * 181.40208 * 6 4 3 9 9 H 1.48498 * 109.47065 * 89.99917 * 8 6 4 10 10 H 1.48500 * 109.47327 * 210.00236 * 8 6 4 11 11 H 1.48497 * 109.46698 * 330.00234 * 8 6 4 12 12 C 1.34768 * 119.99949 * 262.98149 * 3 2 1 13 13 O 1.21567 * 119.99910 * 184.02811 * 12 3 2 14 14 C 1.47978 * 120.00401 * 4.02876 * 12 3 2 15 15 C 1.40210 * 121.15252 * 300.28732 * 14 12 3 16 16 C 1.38451 * 117.81637 * 179.97438 * 15 14 12 17 17 C 1.50699 * 120.01473 * 179.97438 * 16 15 14 18 18 N 1.31945 * 119.97708 * 0.02562 * 16 15 14 19 19 N 1.28282 * 122.53827 * 359.72087 * 18 16 15 20 20 C 1.31896 * 122.33249 * 0.56005 * 19 18 16 21 21 C 1.50703 * 120.17841 * 179.73946 * 20 19 18 22 22 H 1.09010 * 109.46998 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47370 * 299.99910 * 1 2 3 24 24 H 1.09001 * 109.47173 * 60.00234 * 1 2 3 25 25 H 1.09000 * 109.47370 * 240.00090 * 2 1 3 26 26 H 1.09001 * 109.47173 * 119.99766 * 2 1 3 27 27 H 0.96996 * 120.00071 * 179.97438 * 7 6 4 28 28 H 1.08005 * 121.09438 * 359.97438 * 15 14 12 29 29 H 1.09005 * 109.46578 * 90.00296 * 17 16 15 30 30 H 1.08992 * 109.47289 * 209.99767 * 17 16 15 31 31 H 1.08992 * 109.47242 * 330.00901 * 17 16 15 32 32 H 1.08995 * 109.47041 * 264.44325 * 21 20 19 33 33 H 1.08999 * 109.46825 * 24.43698 * 21 20 19 34 34 H 1.08997 * 109.47155 * 144.43828 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1098 2.0743 1.1758 5 1 2.5968 3.0380 1.1981 6 6 1.5755 1.5379 2.3427 7 7 1.0077 0.3539 2.3213 8 14 1.6657 2.5016 3.9405 9 1 0.4568 3.3536 4.0735 10 1 1.7346 1.5576 5.0848 11 1 2.8776 3.3597 3.9330 12 6 2.3774 1.9689 -1.1584 13 8 2.8513 3.0884 -1.1506 14 6 2.1949 1.2517 -2.4398 15 6 2.8265 0.0231 -2.6797 16 6 2.6072 -0.5882 -3.9024 17 6 3.2619 -1.9096 -4.2127 18 7 1.8255 -0.0130 -4.7963 19 7 1.2408 1.1085 -4.5818 20 6 1.3870 1.7757 -3.4535 21 6 0.6814 3.0926 -3.2553 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.6354 -0.0203 3.1351 28 1 3.4632 -0.4315 -1.9351 29 1 2.6085 -2.7222 -3.8951 30 1 3.4391 -1.9842 -5.2856 31 1 4.2113 -1.9782 -3.6819 32 1 1.3569 3.9088 -3.5114 33 1 -0.1981 3.1338 -3.8977 34 1 0.3753 3.1876 -2.2135 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135609854.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:09 Heat of formation + Delta-G solvation = 37.135815 kcal Electronic energy + Delta-G solvation = -18662.385961 eV Core-core repulsion = 15789.745938 eV Total energy + Delta-G solvation = -2872.640023 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.85092 -38.53995 -35.45770 -34.11702 -33.14607 -31.71895 -29.64705 -29.50993 -26.51653 -25.67750 -24.02640 -22.35527 -22.12618 -19.56890 -17.22647 -17.13503 -16.46092 -15.46538 -15.10058 -14.90873 -14.17675 -13.84964 -13.60126 -13.22863 -13.02818 -12.85313 -12.72387 -12.42984 -12.14314 -11.89155 -11.79942 -11.48398 -11.20186 -10.90796 -10.61174 -10.46775 -10.30240 -10.23249 -9.58478 -9.52730 -9.08307 -9.02451 -8.57063 -7.95467 -6.42436 -4.03791 1.00695 1.21418 3.01873 3.13310 3.18108 3.51989 3.83195 3.97501 4.27023 4.49356 4.75679 4.87669 4.95610 5.07346 5.30942 5.45696 5.58937 5.59152 5.86472 5.95876 5.99499 6.03108 6.13501 6.30047 6.45933 6.52393 6.60240 6.63791 6.74027 7.18835 7.39413 7.61492 7.84156 8.28868 8.92942 9.05690 9.16938 9.70557 10.42287 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.030061 B = 0.007322 C = 0.006659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.228707 B = 3823.187542 C = 4203.788147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.108 3.892 3 N -0.418 5.418 4 C -0.292 4.292 5 H 0.109 0.891 6 C 0.024 3.976 7 N -0.868 5.868 8 Si 0.937 3.063 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.268 1.268 12 C 0.467 3.533 13 O -0.581 6.581 14 C -0.074 4.074 15 C -0.103 4.103 16 C 0.055 3.945 17 C -0.095 4.095 18 N -0.251 5.251 19 N -0.247 5.247 20 C 0.093 3.907 21 C -0.094 4.094 22 H 0.036 0.964 23 H 0.094 0.906 24 H 0.013 0.987 25 H 0.033 0.967 26 H 0.122 0.878 27 H 0.269 0.731 28 H 0.150 0.850 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.639 -4.560 -4.699 6.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.015 4.015 3 N -0.134 5.134 4 C -0.420 4.420 5 H 0.127 0.873 6 C -0.178 4.178 7 N -0.509 5.509 8 Si 0.763 3.237 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.193 1.193 12 C 0.254 3.746 13 O -0.467 6.467 14 C -0.089 4.089 15 C -0.132 4.132 16 C -0.089 4.089 17 C -0.153 4.153 18 N -0.094 5.094 19 N -0.089 5.089 20 C -0.052 4.052 21 C -0.152 4.152 22 H 0.055 0.945 23 H 0.112 0.888 24 H 0.032 0.968 25 H 0.051 0.949 26 H 0.140 0.860 27 H 0.080 0.920 28 H 0.167 0.833 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.082 -4.224 -5.999 7.337 hybrid contribution 0.559 0.204 2.220 2.298 sum 0.641 -4.020 -3.779 5.554 Atomic orbital electron populations 1.22183 0.96454 0.99810 1.01270 1.22066 0.95180 0.82975 1.01305 1.43818 1.52669 1.11914 1.05025 1.19920 1.34417 1.03794 0.83903 0.87313 1.25400 0.95792 0.96530 1.00084 1.70106 1.36737 1.15530 1.28486 0.85736 0.79156 0.78976 0.79812 1.20129 1.20683 1.19254 1.17443 0.87891 0.86855 0.82385 1.90644 1.50469 1.19646 1.85973 1.21435 0.95511 0.94520 0.97431 1.22430 0.99058 0.94273 0.97470 1.22681 0.96382 0.98393 0.91462 1.20612 0.99933 0.91396 1.03392 1.72701 1.05544 1.03851 1.27339 1.72840 1.16258 1.01600 1.18218 1.22898 0.94260 0.97905 0.90117 1.20620 0.99789 0.91251 1.03531 0.94450 0.88801 0.96817 0.94914 0.86004 0.91960 0.83269 0.90082 0.90252 0.90482 0.89588 0.90607 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.46 37.16 0.35 -2.60 16 2 C 0.11 2.33 5.29 -4.04 -0.02 2.31 16 3 N -0.42 -10.18 2.63 -115.85 -0.30 -10.48 16 4 C -0.29 -7.56 9.51 -15.02 -0.14 -7.70 16 5 H 0.11 2.95 7.18 -52.49 -0.38 2.58 16 6 C 0.02 0.58 5.25 -17.45 -0.09 0.49 16 7 N -0.87 -20.43 7.18 55.50 0.40 -20.03 16 8 Si 0.94 19.25 29.55 -169.99 -5.02 14.23 16 9 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 10 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 11 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 12 C 0.47 11.21 6.03 -12.27 -0.07 11.14 16 13 O -0.58 -15.64 16.25 5.31 0.09 -15.55 16 14 C -0.07 -1.53 4.97 -104.57 -0.52 -2.05 16 15 C -0.10 -1.81 7.45 -38.76 -0.29 -2.10 16 16 C 0.05 0.89 6.86 -82.47 -0.57 0.32 16 17 C -0.09 -1.07 10.19 36.00 0.37 -0.70 16 18 N -0.25 -4.64 11.41 33.57 0.38 -4.26 16 19 N -0.25 -4.84 11.42 33.82 0.39 -4.46 16 20 C 0.09 1.85 6.91 -81.97 -0.57 1.28 16 21 C -0.09 -1.66 9.41 36.01 0.34 -1.32 16 22 H 0.04 0.71 8.14 -51.92 -0.42 0.28 16 23 H 0.09 2.19 5.87 -51.93 -0.30 1.89 16 24 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.03 0.64 4.29 -51.93 -0.22 0.42 16 26 H 0.12 2.81 5.88 -51.93 -0.31 2.50 16 27 H 0.27 6.03 8.31 -40.82 -0.34 5.69 16 28 H 0.15 2.35 7.46 -52.48 -0.39 1.96 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 32 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.08 1.58 7.35 -51.93 -0.38 1.19 16 LS Contribution 284.38 15.07 4.29 4.29 Total: -1.00 -28.61 284.38 -5.08 -33.69 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -4.07 Total: 3.50 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -1.21 Total: -0.92 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.86 Total: -39.23 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.09 Total: -15.55 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.61 -5.08 -33.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135609854.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.824 kcal (2) G-P(sol) polarization free energy of solvation -28.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds