Wall clock time and date at job start Thu Apr 9 2020 12:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47263 * 2 1 4 4 C 1.36798 * 119.99807 * 82.97951 * 3 2 1 5 5 H 1.08001 * 119.99753 * 171.41960 * 4 3 2 6 6 C 1.39097 * 120.00081 * 351.41409 * 4 3 2 7 7 N 1.31331 * 120.00179 * 1.40095 * 6 4 3 8 8 Si 1.86803 * 120.00136 * 181.40208 * 6 4 3 9 9 H 1.48498 * 109.47065 * 89.99917 * 8 6 4 10 10 H 1.48500 * 109.47327 * 210.00236 * 8 6 4 11 11 H 1.48497 * 109.46698 * 330.00234 * 8 6 4 12 12 C 1.34768 * 119.99949 * 262.98149 * 3 2 1 13 13 O 1.21567 * 119.99910 * 184.02811 * 12 3 2 14 14 C 1.47978 * 120.00401 * 4.02876 * 12 3 2 15 15 C 1.40210 * 121.15252 * 300.28732 * 14 12 3 16 16 C 1.38451 * 117.81637 * 179.97438 * 15 14 12 17 17 C 1.50699 * 120.01473 * 179.97438 * 16 15 14 18 18 N 1.31945 * 119.97708 * 0.02562 * 16 15 14 19 19 N 1.28282 * 122.53827 * 359.72087 * 18 16 15 20 20 C 1.31896 * 122.33249 * 0.56005 * 19 18 16 21 21 C 1.50703 * 120.17841 * 179.73946 * 20 19 18 22 22 H 1.09010 * 109.46998 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47370 * 299.99910 * 1 2 3 24 24 H 1.09001 * 109.47173 * 60.00234 * 1 2 3 25 25 H 1.09000 * 109.47370 * 240.00090 * 2 1 3 26 26 H 1.09001 * 109.47173 * 119.99766 * 2 1 3 27 27 H 0.96996 * 120.00071 * 179.97438 * 7 6 4 28 28 H 1.08005 * 121.09438 * 359.97438 * 15 14 12 29 29 H 1.09005 * 109.46578 * 90.00296 * 17 16 15 30 30 H 1.08992 * 109.47289 * 209.99767 * 17 16 15 31 31 H 1.08992 * 109.47242 * 330.00901 * 17 16 15 32 32 H 1.08995 * 109.47041 * 264.44325 * 21 20 19 33 33 H 1.08999 * 109.46825 * 24.43698 * 21 20 19 34 34 H 1.08997 * 109.47155 * 144.43828 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1098 2.0743 1.1758 5 1 2.5968 3.0380 1.1981 6 6 1.5755 1.5379 2.3427 7 7 1.0077 0.3539 2.3213 8 14 1.6657 2.5016 3.9405 9 1 0.4568 3.3536 4.0735 10 1 1.7346 1.5576 5.0848 11 1 2.8776 3.3597 3.9330 12 6 2.3774 1.9689 -1.1584 13 8 2.8513 3.0884 -1.1506 14 6 2.1949 1.2517 -2.4398 15 6 2.8265 0.0231 -2.6797 16 6 2.6072 -0.5882 -3.9024 17 6 3.2619 -1.9096 -4.2127 18 7 1.8255 -0.0130 -4.7963 19 7 1.2408 1.1085 -4.5818 20 6 1.3870 1.7757 -3.4535 21 6 0.6814 3.0926 -3.2553 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.6354 -0.0203 3.1351 28 1 3.4632 -0.4315 -1.9351 29 1 2.6085 -2.7222 -3.8951 30 1 3.4391 -1.9842 -5.2856 31 1 4.2113 -1.9782 -3.6819 32 1 1.3569 3.9088 -3.5114 33 1 -0.1981 3.1338 -3.8977 34 1 0.3753 3.1876 -2.2135 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135609854.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:09 Heat of formation + Delta-G solvation = 19.711010 kcal Electronic energy + Delta-G solvation = -18663.141557 eV Core-core repulsion = 15789.745938 eV Total energy + Delta-G solvation = -2873.395619 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.33843 -40.31875 -37.30881 -35.47575 -34.73663 -33.50697 -31.38061 -30.84706 -27.87674 -27.37672 -25.60353 -23.86636 -23.82407 -21.24245 -19.01814 -18.67122 -18.21172 -16.99550 -16.69539 -16.46983 -15.86283 -15.48964 -15.20221 -14.76424 -14.45588 -14.38809 -14.26860 -13.64041 -13.47821 -13.32173 -13.24208 -13.08441 -12.87850 -12.70025 -12.25121 -12.06677 -12.01307 -11.92561 -11.19195 -11.08536 -10.82593 -10.46042 -10.35235 -9.80410 -8.26518 -5.97661 -0.49906 -0.19010 1.34530 1.43969 1.54486 1.80348 2.18922 2.41881 2.77799 2.93930 3.04204 3.39649 3.47509 3.57524 3.88839 4.09211 4.31138 4.39582 4.51125 4.58159 4.76502 4.79100 4.81390 4.84285 4.87754 5.03396 5.08892 5.15128 5.32190 5.33574 5.52765 5.82259 5.96854 6.42390 7.04503 7.31239 7.61460 7.84838 8.56207 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.030061 B = 0.007322 C = 0.006659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.228707 B = 3823.187542 C = 4203.788147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.111 3.889 3 N -0.425 5.425 4 C -0.336 4.336 5 H 0.082 0.918 6 C 0.003 3.997 7 N -0.867 5.867 8 Si 0.994 3.006 9 H -0.275 1.275 10 H -0.266 1.266 11 H -0.275 1.275 12 C 0.463 3.537 13 O -0.623 6.623 14 C -0.098 4.098 15 C -0.096 4.096 16 C 0.067 3.933 17 C -0.094 4.094 18 N -0.263 5.263 19 N -0.257 5.257 20 C 0.082 3.918 21 C -0.089 4.089 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.008 0.992 25 H 0.057 0.943 26 H 0.111 0.889 27 H 0.276 0.724 28 H 0.170 0.830 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.689 -6.633 -4.907 8.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.011 4.011 3 N -0.140 5.140 4 C -0.464 4.464 5 H 0.100 0.900 6 C -0.200 4.200 7 N -0.506 5.506 8 Si 0.818 3.182 9 H -0.200 1.200 10 H -0.191 1.191 11 H -0.200 1.200 12 C 0.251 3.749 13 O -0.512 6.512 14 C -0.112 4.112 15 C -0.125 4.125 16 C -0.078 4.078 17 C -0.152 4.152 18 N -0.106 5.106 19 N -0.098 5.098 20 C -0.063 4.063 21 C -0.147 4.147 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.027 0.973 25 H 0.075 0.925 26 H 0.129 0.871 27 H 0.087 0.913 28 H 0.187 0.813 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.109 -6.341 -6.216 8.880 hybrid contribution 0.561 0.747 2.236 2.423 sum 0.670 -5.593 -3.980 6.897 Atomic orbital electron populations 1.22036 0.96070 1.00805 0.99795 1.22079 0.95405 0.81777 1.01870 1.43960 1.52472 1.12745 1.04835 1.19811 1.37127 1.03885 0.85589 0.90014 1.26007 0.94744 0.97302 1.01906 1.70170 1.35455 1.15589 1.29413 0.84903 0.78606 0.77933 0.76753 1.20015 1.19089 1.20026 1.17875 0.87013 0.86608 0.83382 1.90592 1.52191 1.21561 1.86870 1.21238 0.97695 0.96099 0.96203 1.22733 0.98234 0.92971 0.98593 1.23379 0.94822 0.99576 0.89989 1.20836 1.00945 0.88737 1.04685 1.72666 1.06086 1.03652 1.28170 1.72836 1.16834 1.02235 1.17926 1.23065 0.94608 0.98525 0.90112 1.20584 1.00689 0.90760 1.02659 0.92095 0.91109 0.97339 0.92497 0.87150 0.91277 0.81282 0.88005 0.89060 0.88049 0.89509 0.88149 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.36 9.46 71.98 0.68 -4.68 16 2 C 0.11 4.73 5.29 86.38 0.46 5.18 16 3 N -0.42 -21.06 2.63 -638.71 -1.68 -22.74 16 4 C -0.34 -17.92 9.51 84.13 0.80 -17.12 16 5 H 0.08 4.69 7.18 -2.91 -0.02 4.67 16 6 C 0.00 0.14 5.25 84.97 0.45 0.59 16 7 N -0.87 -40.19 7.18 21.69 0.16 -40.04 16 8 Si 0.99 39.35 29.55 68.60 2.03 41.38 16 9 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 10 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 11 H -0.28 -11.17 7.11 99.48 0.71 -10.47 16 12 C 0.46 22.79 6.03 86.83 0.52 23.31 16 13 O -0.62 -35.03 16.25 -3.93 -0.06 -35.09 16 14 C -0.10 -4.03 4.97 -19.83 -0.10 -4.13 16 15 C -0.10 -3.18 7.45 22.80 0.17 -3.01 16 16 C 0.07 1.97 6.86 42.59 0.29 2.26 16 17 C -0.09 -1.70 10.19 71.24 0.73 -0.97 16 18 N -0.26 -9.16 11.41 -47.72 -0.54 -9.70 16 19 N -0.26 -9.78 11.42 -46.90 -0.54 -10.31 16 20 C 0.08 3.25 6.91 42.93 0.30 3.55 16 21 C -0.09 -3.19 9.41 71.24 0.67 -2.52 16 22 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 23 H 0.07 3.28 5.87 -2.39 -0.01 3.27 16 24 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 25 H 0.06 2.12 4.29 -2.39 -0.01 2.11 16 26 H 0.11 4.99 5.88 -2.39 -0.01 4.98 16 27 H 0.28 11.96 8.31 -92.71 -0.77 11.19 16 28 H 0.17 4.87 7.46 -2.91 -0.02 4.85 16 29 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.10 1.40 8.09 -2.39 -0.02 1.38 16 32 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 34 H 0.06 2.44 7.35 -2.39 -0.02 2.42 16 Total: -1.00 -62.84 284.38 5.44 -57.40 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 1.12 Total: 16.64 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 4.96 Total: 2.46 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -2.60 Total: -82.79 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -0.06 Total: -35.09 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -62.84 5.44 -57.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135609854.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.114 kcal (2) G-P(sol) polarization free energy of solvation -62.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds