Wall clock time and date at job start Thu Apr 9 2020 12:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46504 * 109.46924 * 2 1 4 4 C 1.46495 * 119.99798 * 265.10057 * 3 2 1 5 5 C 1.50708 * 109.47166 * 262.86758 * 4 3 2 6 6 H 1.08005 * 119.99600 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00277 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00060 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00036 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46852 * 60.00269 * 9 7 5 11 11 H 1.48498 * 109.46949 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47326 * 300.00521 * 9 7 5 13 13 C 1.34773 * 120.00136 * 85.10113 * 3 2 1 14 14 O 1.21484 * 120.00088 * 3.14727 * 13 3 2 15 15 C 1.48457 * 120.00098 * 183.15064 * 13 3 2 16 16 C 1.39526 * 120.55152 * 173.25537 * 15 13 3 17 17 C 1.38765 * 118.26611 * 179.97438 * 16 15 13 18 18 C 1.50702 * 120.42657 * 179.72827 * 17 16 15 19 19 N 1.32202 * 119.14418 * 359.97438 * 17 16 15 20 20 C 1.31881 * 121.03923 * 0.02562 * 19 17 16 21 21 N 1.31584 * 121.91537 * 359.97438 * 20 19 17 22 22 H 1.09001 * 109.46543 * 300.00005 * 1 2 3 23 23 H 1.08993 * 109.47568 * 59.99831 * 1 2 3 24 24 H 1.09000 * 109.46996 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.46673 * 240.00274 * 2 1 3 26 26 H 1.09001 * 109.47262 * 119.99617 * 2 1 3 27 27 H 1.09004 * 109.47601 * 22.86267 * 4 3 2 28 28 H 1.08998 * 109.47428 * 142.87031 * 4 3 2 29 29 H 0.96995 * 120.00444 * 179.97438 * 8 7 5 30 30 H 1.08008 * 120.87005 * 359.97438 * 16 15 13 31 31 H 1.08993 * 109.47127 * 89.99621 * 18 17 16 32 32 H 1.08999 * 109.46715 * 210.00048 * 18 17 16 33 33 H 1.09005 * 109.46786 * 329.99733 * 18 17 16 34 34 H 1.08002 * 119.04433 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3647 2.0357 -1.2641 5 6 3.8516 1.9385 -1.4893 6 1 4.4761 1.4387 -0.7635 7 6 4.4147 2.4865 -2.6222 8 7 3.6541 3.0946 -3.5063 9 14 6.2578 2.3666 -2.9009 10 1 6.6580 0.9377 -2.9567 11 1 6.6088 3.0299 -4.1823 12 1 6.9719 3.0374 -1.7850 13 6 2.1490 2.0498 1.1629 14 8 1.9166 1.4892 2.2153 15 6 2.5768 3.4714 1.1578 16 6 2.5813 4.2150 2.3385 17 6 2.9906 5.5396 2.2793 18 6 3.0085 6.3891 3.5239 19 7 3.3598 6.0480 1.1162 20 6 3.3437 5.3171 0.0186 21 7 2.9633 4.0574 0.0273 22 1 -0.3632 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8403 1.5440 -2.0835 28 1 2.0714 3.0847 -1.2225 29 1 4.0502 3.4805 -4.3031 30 1 2.2742 3.7711 3.2740 31 1 3.9810 6.3030 4.0086 32 1 2.8269 7.4299 3.2560 33 1 2.2305 6.0488 4.2074 34 1 3.6516 5.7653 -0.9145 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158598751.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:11 Heat of formation + Delta-G solvation = 26.242764 kcal Electronic energy + Delta-G solvation = -18443.318633 eV Core-core repulsion = 15570.206253 eV Total energy + Delta-G solvation = -2873.112381 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.74412 -38.78307 -35.36905 -34.05434 -32.65179 -32.15220 -30.30257 -28.34277 -26.91119 -24.85298 -23.30889 -22.90016 -22.02018 -19.00807 -17.35793 -16.62628 -16.17901 -15.41444 -15.14870 -14.94925 -14.79472 -14.29860 -14.07106 -13.39577 -13.00784 -12.82688 -12.70599 -12.34385 -12.27347 -11.93538 -11.63774 -11.40858 -10.93276 -10.82898 -10.52065 -10.19523 -10.11090 -9.99161 -9.72843 -9.51430 -9.15857 -8.54948 -8.11767 -7.68553 -6.02391 -4.02004 1.05401 1.41026 3.29504 3.34214 3.35180 3.41633 3.69048 4.35144 4.37568 4.42310 4.65538 4.86276 5.27760 5.33407 5.36984 5.49967 5.57436 5.60160 5.75250 5.82827 5.86223 6.03421 6.06312 6.20923 6.35997 6.58910 6.74436 6.82201 7.35379 7.53890 7.72067 7.89333 8.24333 8.27376 8.54525 8.82840 8.99589 9.57904 11.05682 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.015105 B = 0.010640 C = 0.006980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.290467 B = 2630.874665 C = 4010.758505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.112 3.888 3 N -0.569 5.569 4 C 0.226 3.774 5 C -0.501 4.501 6 H 0.049 0.951 7 C 0.070 3.930 8 N -0.890 5.890 9 Si 0.886 3.114 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.280 1.280 13 C 0.563 3.437 14 O -0.566 6.566 15 C 0.134 3.866 16 C -0.181 4.181 17 C 0.152 3.848 18 C -0.100 4.100 19 N -0.518 5.518 20 C 0.287 3.713 21 N -0.419 5.419 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.026 0.974 28 H 0.083 0.917 29 H 0.261 0.739 30 H 0.149 0.851 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.600 2.751 8.115 9.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.298 5.298 4 C 0.107 3.893 5 C -0.540 4.540 6 H 0.068 0.932 7 C -0.132 4.132 8 N -0.529 5.529 9 Si 0.714 3.286 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.206 1.206 13 C 0.349 3.651 14 O -0.447 6.447 15 C -0.014 4.014 16 C -0.204 4.204 17 C 0.005 3.995 18 C -0.157 4.157 19 N -0.234 5.234 20 C 0.000 4.000 21 N -0.134 5.134 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.044 0.956 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.167 0.833 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -3.447 2.909 7.561 8.804 hybrid contribution 1.032 -0.425 0.271 1.148 sum -2.415 2.485 7.832 8.564 Atomic orbital electron populations 1.22112 0.96552 1.01448 1.02069 1.21367 0.93623 0.83426 1.02747 1.48345 1.59840 1.12893 1.08703 1.20151 0.95934 0.95508 0.77714 1.21196 0.92356 1.35186 1.05254 0.93231 1.24742 0.97285 0.95263 0.95928 1.69907 1.34889 1.37332 1.10775 0.86770 0.86288 0.78237 0.77328 1.20460 1.21213 1.20560 1.17815 0.78420 0.84779 0.84096 1.90670 1.53905 1.68597 1.31482 1.21738 0.94558 0.95409 0.89655 1.22661 1.01999 0.95294 1.00439 1.21606 0.91972 0.91723 0.94248 1.20699 1.03119 0.99419 0.92492 1.68156 1.15586 1.40252 0.99440 1.25231 0.91651 0.86997 0.96156 1.69541 1.07013 1.10463 1.26402 0.92736 0.92474 0.92177 0.90006 0.91088 0.95567 0.89990 0.92910 0.83330 0.90104 0.90216 0.90431 0.78655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 10.21 37.16 0.38 -2.18 16 2 C 0.11 2.05 6.07 -4.04 -0.02 2.02 16 3 N -0.57 -12.37 2.49 -175.94 -0.44 -12.80 16 4 C 0.23 5.46 4.74 -5.19 -0.02 5.44 16 5 C -0.50 -13.17 8.00 -34.44 -0.28 -13.44 16 6 H 0.05 1.36 7.81 -52.48 -0.41 0.95 16 7 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 8 N -0.89 -24.20 13.29 55.43 0.74 -23.46 16 9 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.56 12.31 7.57 -12.05 -0.09 12.22 16 14 O -0.57 -12.70 16.09 5.38 0.09 -12.62 16 15 C 0.13 2.78 6.64 -82.64 -0.55 2.23 16 16 C -0.18 -3.12 9.40 -38.91 -0.37 -3.49 16 17 C 0.15 2.39 6.83 -82.24 -0.56 1.82 16 18 C -0.10 -1.08 10.22 36.01 0.37 -0.71 16 19 N -0.52 -9.07 10.36 -10.81 -0.11 -9.19 16 20 C 0.29 5.51 12.28 -92.26 -1.13 4.37 16 21 N -0.42 -9.02 5.22 -11.14 -0.06 -9.08 16 22 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 26 H 0.07 1.30 7.53 -51.93 -0.39 0.90 16 27 H 0.03 0.66 8.02 -51.93 -0.42 0.25 16 28 H 0.08 2.07 5.26 -51.94 -0.27 1.80 16 29 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.15 2.29 7.75 -52.48 -0.41 1.89 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 34 H 0.20 3.47 8.06 -52.49 -0.42 3.05 16 LS Contribution 295.30 15.07 4.45 4.45 Total: -1.00 -29.71 295.30 -7.14 -36.84 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -4.41 Total: -0.12 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: -2.37 Total: 10.03 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.13 Total: -54.53 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.09 Total: -12.62 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.71 -7.14 -36.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158598751.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.088 kcal (2) G-P(sol) polarization free energy of solvation -29.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds