Wall clock time and date at job start Thu Apr 9 2020 12:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46504 * 109.46924 * 2 1 4 4 C 1.46495 * 119.99798 * 265.10057 * 3 2 1 5 5 C 1.50708 * 109.47166 * 262.86758 * 4 3 2 6 6 H 1.08005 * 119.99600 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00277 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00060 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00036 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46852 * 60.00269 * 9 7 5 11 11 H 1.48498 * 109.46949 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47326 * 300.00521 * 9 7 5 13 13 C 1.34773 * 120.00136 * 85.10113 * 3 2 1 14 14 O 1.21484 * 120.00088 * 3.14727 * 13 3 2 15 15 C 1.48457 * 120.00098 * 183.15064 * 13 3 2 16 16 C 1.39526 * 120.55152 * 173.25537 * 15 13 3 17 17 C 1.38765 * 118.26611 * 179.97438 * 16 15 13 18 18 C 1.50702 * 120.42657 * 179.72827 * 17 16 15 19 19 N 1.32202 * 119.14418 * 359.97438 * 17 16 15 20 20 C 1.31881 * 121.03923 * 0.02562 * 19 17 16 21 21 N 1.31584 * 121.91537 * 359.97438 * 20 19 17 22 22 H 1.09001 * 109.46543 * 300.00005 * 1 2 3 23 23 H 1.08993 * 109.47568 * 59.99831 * 1 2 3 24 24 H 1.09000 * 109.46996 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.46673 * 240.00274 * 2 1 3 26 26 H 1.09001 * 109.47262 * 119.99617 * 2 1 3 27 27 H 1.09004 * 109.47601 * 22.86267 * 4 3 2 28 28 H 1.08998 * 109.47428 * 142.87031 * 4 3 2 29 29 H 0.96995 * 120.00444 * 179.97438 * 8 7 5 30 30 H 1.08008 * 120.87005 * 359.97438 * 16 15 13 31 31 H 1.08993 * 109.47127 * 89.99621 * 18 17 16 32 32 H 1.08999 * 109.46715 * 210.00048 * 18 17 16 33 33 H 1.09005 * 109.46786 * 329.99733 * 18 17 16 34 34 H 1.08002 * 119.04433 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3647 2.0357 -1.2641 5 6 3.8516 1.9385 -1.4893 6 1 4.4761 1.4387 -0.7635 7 6 4.4147 2.4865 -2.6222 8 7 3.6541 3.0946 -3.5063 9 14 6.2578 2.3666 -2.9009 10 1 6.6580 0.9377 -2.9567 11 1 6.6088 3.0299 -4.1823 12 1 6.9719 3.0374 -1.7850 13 6 2.1490 2.0498 1.1629 14 8 1.9166 1.4892 2.2153 15 6 2.5768 3.4714 1.1578 16 6 2.5813 4.2150 2.3385 17 6 2.9906 5.5396 2.2793 18 6 3.0085 6.3891 3.5239 19 7 3.3598 6.0480 1.1162 20 6 3.3437 5.3171 0.0186 21 7 2.9633 4.0574 0.0273 22 1 -0.3632 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8403 1.5440 -2.0835 28 1 2.0714 3.0847 -1.2225 29 1 4.0502 3.4805 -4.3031 30 1 2.2742 3.7711 3.2740 31 1 3.9810 6.3030 4.0086 32 1 2.8269 7.4299 3.2560 33 1 2.2305 6.0488 4.2074 34 1 3.6516 5.7653 -0.9145 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158598751.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:10 Heat of formation + Delta-G solvation = 9.764702 kcal Electronic energy + Delta-G solvation = -18444.033176 eV Core-core repulsion = 15570.206253 eV Total energy + Delta-G solvation = -2873.826923 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.21197 -40.40833 -37.08400 -35.42834 -34.58043 -33.57208 -31.83823 -29.54171 -28.78045 -26.30908 -24.94180 -24.58693 -23.45108 -20.57224 -18.94517 -18.45671 -17.89077 -16.97948 -16.68382 -16.46369 -16.36868 -16.02279 -15.53118 -14.84978 -14.43154 -14.32720 -14.13286 -13.80158 -13.51542 -13.16176 -13.13398 -13.11487 -12.70139 -12.64674 -12.15275 -11.85926 -11.68413 -11.61939 -11.42764 -11.26106 -10.58359 -10.45824 -9.76522 -9.42523 -8.05597 -6.11268 -0.44452 0.05739 1.39952 1.41945 1.47854 1.76975 2.11661 2.46500 2.88120 3.11240 3.13179 3.27513 3.47311 3.91047 4.03270 4.15152 4.36413 4.46352 4.52034 4.58227 4.78730 4.81384 4.87881 4.96552 5.04258 5.10627 5.25744 5.40232 5.55724 5.84377 5.87905 6.03825 6.25955 6.46220 6.90304 7.05889 7.23114 7.51966 9.01565 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.015105 B = 0.010640 C = 0.006980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.290467 B = 2630.874665 C = 4010.758505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.104 3.896 3 N -0.577 5.577 4 C 0.243 3.757 5 C -0.506 4.506 6 H 0.032 0.968 7 C 0.036 3.964 8 N -0.911 5.911 9 Si 0.937 3.063 10 H -0.278 1.278 11 H -0.279 1.279 12 H -0.284 1.284 13 C 0.558 3.442 14 O -0.577 6.577 15 C 0.106 3.894 16 C -0.174 4.174 17 C 0.161 3.839 18 C -0.097 4.097 19 N -0.518 5.518 20 C 0.278 3.722 21 N -0.454 5.454 22 H 0.045 0.955 23 H 0.052 0.948 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.009 0.991 28 H 0.075 0.925 29 H 0.263 0.737 30 H 0.169 0.831 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.449 3.366 9.513 10.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 N -0.305 5.305 4 C 0.123 3.877 5 C -0.545 4.545 6 H 0.050 0.950 7 C -0.164 4.164 8 N -0.551 5.551 9 Si 0.764 3.236 10 H -0.203 1.203 11 H -0.204 1.204 12 H -0.210 1.210 13 C 0.344 3.656 14 O -0.459 6.459 15 C -0.041 4.041 16 C -0.197 4.197 17 C 0.013 3.987 18 C -0.154 4.154 19 N -0.234 5.234 20 C -0.009 4.009 21 N -0.170 5.170 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.111 0.889 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.027 0.973 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.186 0.814 31 H 0.118 0.882 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -3.305 3.502 8.957 10.169 hybrid contribution 0.970 -0.575 -0.058 1.129 sum -2.335 2.927 8.899 9.655 Atomic orbital electron populations 1.22014 0.94221 1.03391 1.01348 1.21589 0.95557 0.81891 1.02801 1.48380 1.60086 1.14054 1.07981 1.19773 0.94622 0.95119 0.78225 1.21222 0.93182 1.35118 1.04955 0.95017 1.25255 1.00409 0.95025 0.95751 1.69982 1.36148 1.37916 1.11087 0.85962 0.82378 0.78065 0.77183 1.20341 1.20423 1.20960 1.18096 0.78110 0.85505 0.83870 1.90639 1.54580 1.69130 1.31507 1.21773 0.96182 0.95217 0.90904 1.22929 1.01072 0.95722 0.99933 1.22457 0.89351 0.91646 0.95219 1.20891 1.05097 0.99014 0.90359 1.68271 1.15626 1.39812 0.99692 1.25324 0.91870 0.86570 0.97148 1.69359 1.08538 1.11682 1.27468 0.93601 0.92912 0.88897 0.89880 0.91029 0.97251 0.90822 0.92792 0.81372 0.88235 0.89125 0.87821 0.78268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.60 10.21 71.98 0.73 -3.87 16 2 C 0.10 3.81 6.07 86.38 0.52 4.34 16 3 N -0.58 -25.44 2.49 -828.85 -2.06 -27.51 16 4 C 0.24 12.04 4.74 85.64 0.41 12.44 16 5 C -0.51 -27.08 8.00 25.60 0.20 -26.87 16 6 H 0.03 1.78 7.81 -2.91 -0.02 1.75 16 7 C 0.04 1.89 5.46 84.65 0.46 2.35 16 8 N -0.91 -50.00 13.29 21.45 0.28 -49.72 16 9 Si 0.94 43.12 29.54 68.60 2.03 45.15 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 C 0.56 24.53 7.57 86.97 0.66 25.19 16 14 O -0.58 -25.70 16.09 -3.66 -0.06 -25.76 16 15 C 0.11 4.37 6.64 41.99 0.28 4.65 16 16 C -0.17 -5.71 9.40 22.71 0.21 -5.50 16 17 C 0.16 4.68 6.83 42.63 0.29 4.97 16 18 C -0.10 -1.70 10.22 71.24 0.73 -0.97 16 19 N -0.52 -17.41 10.36 -188.11 -1.95 -19.36 16 20 C 0.28 10.69 12.28 180.92 2.22 12.91 16 21 N -0.45 -19.85 5.22 -189.15 -0.99 -20.84 16 22 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.08 2.98 8.03 -2.39 -0.02 2.96 16 26 H 0.07 2.60 7.53 -2.39 -0.02 2.58 16 27 H 0.01 0.49 8.02 -2.38 -0.02 0.48 16 28 H 0.07 3.84 5.26 -2.41 -0.01 3.83 16 29 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 30 H 0.17 4.78 7.75 -2.91 -0.02 4.76 16 31 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.34 8.10 -2.38 -0.02 1.32 16 34 H 0.20 7.21 8.06 -2.91 -0.02 7.19 16 Total: -1.00 -63.55 295.30 5.07 -58.47 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 1.10 Total: 9.92 kcal Atomic # 6 Polarization: 22.92 SS G_CDS: 6.72 Total: 29.64 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -4.71 Total: -117.42 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.06 Total: -25.76 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -63.55 5.07 -58.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158598751.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.239 kcal (2) G-P(sol) polarization free energy of solvation -63.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds