Wall clock time and date at job start Thu Apr 9 2020 12:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37484 * 119.99836 * 2 1 4 4 N 1.37483 * 120.00078 * 359.97438 * 3 2 1 5 5 N 1.30342 * 120.00026 * 180.02562 * 3 2 1 6 6 C 1.46494 * 120.00040 * 173.80260 * 5 3 2 7 7 C 1.50708 * 109.47137 * 114.32818 * 6 5 3 8 8 C 1.38302 * 119.93037 * 90.00293 * 7 6 5 9 9 C 1.38095 * 120.06991 * 180.02562 * 8 7 6 10 10 C 1.38884 * 119.92867 * 359.96916 * 9 8 7 11 11 O 1.35753 * 120.06976 * 180.02562 * 10 9 8 12 12 C 1.34830 * 116.99808 * 5.43466 * 11 10 9 13 13 H 1.08006 * 120.00015 * 354.91684 * 12 11 10 14 14 C 1.38656 * 119.99926 * 174.91067 * 12 11 10 15 15 N 1.31551 * 120.00097 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00012 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47210 * 90.00175 * 16 14 12 18 18 H 1.48499 * 109.47008 * 209.99935 * 16 14 12 19 19 H 1.48494 * 109.47307 * 330.00240 * 16 14 12 20 20 C 1.38881 * 119.86086 * 0.27904 * 10 9 8 21 21 C 1.38100 * 119.93018 * 359.44757 * 20 10 9 22 22 H 1.09000 * 109.47145 * 300.00397 * 1 2 3 23 23 H 1.09003 * 109.47247 * 59.99907 * 1 2 3 24 24 H 1.09002 * 109.47052 * 180.02562 * 1 2 3 25 25 H 0.96991 * 119.99971 * 179.97438 * 2 1 3 26 26 H 0.96998 * 119.99920 * 184.98121 * 4 3 2 27 27 H 0.96999 * 119.99939 * 4.99001 * 4 3 2 28 28 H 1.08999 * 109.47476 * 354.32999 * 6 5 3 29 29 H 1.09001 * 109.46879 * 234.32448 * 6 5 3 30 30 H 1.08004 * 119.96233 * 359.97438 * 8 7 6 31 31 H 1.07995 * 120.03660 * 179.97438 * 9 8 7 32 32 H 0.96997 * 120.00310 * 180.02562 * 15 14 12 33 33 H 1.08001 * 120.03093 * 179.72264 * 20 10 9 34 34 H 1.07998 * 119.96459 * 180.27470 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1524 1.1907 0.0000 4 7 1.4650 2.3813 -0.0005 5 7 3.4559 1.1907 -0.0005 6 6 4.1882 2.4520 -0.1375 7 6 4.9468 2.7331 1.1341 8 6 6.2399 2.2658 1.2838 9 6 6.9374 2.5212 2.4480 10 6 6.3394 3.2487 3.4687 11 8 7.0227 3.5019 4.6141 12 6 8.3145 3.1177 4.6538 13 1 8.7375 2.5597 3.8315 14 6 9.0999 3.4390 5.7504 15 7 8.5846 4.1183 6.7522 16 14 10.8897 2.9073 5.8052 17 1 11.7390 3.9646 5.2001 18 1 11.2989 2.6910 7.2162 19 1 11.0543 1.6437 5.0428 20 6 5.0390 3.7122 3.3173 21 6 4.3487 3.4583 2.1484 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.9500 -0.8400 0.0004 26 1 1.9473 3.2197 -0.0735 27 1 0.4977 2.3829 0.0722 28 1 3.4842 3.2623 -0.3271 29 1 4.8886 2.3770 -0.9693 30 1 6.7042 1.6998 0.4898 31 1 7.9470 2.1556 2.5645 32 1 9.1341 4.3434 7.5191 33 1 4.5697 4.2744 4.1111 34 1 3.3390 3.8222 2.0283 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171043159.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:12 Heat of formation + Delta-G solvation = 36.090931 kcal Electronic energy + Delta-G solvation = -17169.979747 eV Core-core repulsion = 14297.294414 eV Total energy + Delta-G solvation = -2872.685332 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.06134 -38.42448 -36.52315 -34.16041 -32.31310 -31.75464 -30.04650 -29.52693 -26.75704 -25.36810 -23.96954 -21.84355 -20.82672 -19.86442 -17.98288 -17.69541 -16.87408 -16.61177 -15.38248 -14.94716 -14.50641 -14.47323 -14.19206 -13.75503 -13.48703 -13.38843 -12.73068 -12.61178 -12.46912 -12.40023 -11.81126 -11.51043 -11.18125 -10.73074 -10.68575 -10.53268 -10.36365 -9.24201 -9.21630 -8.97067 -8.70981 -8.04714 -7.65598 -7.02095 -6.37391 -3.95801 2.33806 2.42665 3.05916 3.12488 3.18419 3.19678 3.23519 4.01782 4.03585 4.68563 4.84397 5.12896 5.17065 5.34723 5.36912 5.43564 5.70574 5.78157 5.86091 6.01578 6.14673 6.33846 6.46291 6.55486 6.81332 6.96450 7.04223 7.16756 7.35930 7.38905 7.54321 7.56418 7.95265 7.97947 8.08528 8.78000 9.08730 9.80662 10.81136 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.045696 B = 0.003960 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.599984 B = 7069.801984 C = 7196.638073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.734 5.734 3 C 0.614 3.386 4 N -0.898 5.898 5 N -0.652 5.652 6 C 0.137 3.863 7 C -0.172 4.172 8 C -0.054 4.054 9 C -0.234 4.234 10 C 0.153 3.847 11 O -0.182 6.182 12 C -0.390 4.390 13 H 0.091 0.909 14 C 0.038 3.962 15 N -0.866 5.866 16 Si 0.940 3.060 17 H -0.274 1.274 18 H -0.278 1.278 19 H -0.268 1.268 20 C -0.194 4.194 21 C -0.070 4.070 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.078 0.922 25 H 0.416 0.584 26 H 0.408 0.592 27 H 0.387 0.613 28 H 0.024 0.976 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.126 0.874 32 H 0.269 0.731 33 H 0.114 0.886 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.111 -4.830 -13.178 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.378 5.378 3 C 0.247 3.753 4 N -0.457 5.457 5 N -0.394 5.394 6 C 0.006 3.994 7 C -0.174 4.174 8 C -0.073 4.073 9 C -0.253 4.253 10 C 0.099 3.901 11 O -0.086 6.086 12 C -0.466 4.466 13 H 0.109 0.891 14 C -0.166 4.166 15 N -0.502 5.502 16 Si 0.765 3.235 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.192 1.192 20 C -0.213 4.213 21 C -0.089 4.089 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.097 0.903 25 H 0.253 0.747 26 H 0.242 0.758 27 H 0.215 0.785 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.143 0.857 32 H 0.078 0.922 33 H 0.132 0.868 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.482 -5.157 -12.694 19.222 hybrid contribution 0.354 0.473 0.099 0.599 sum -13.128 -4.685 -12.595 18.786 Atomic orbital electron populations 1.21497 0.80110 1.02985 1.00695 1.43568 1.05190 1.05230 1.83858 1.18927 0.87341 0.80280 0.88710 1.43144 1.10041 1.07016 1.85547 1.72603 1.01455 1.27326 1.38007 1.20256 0.95051 0.89055 0.95005 1.19318 0.95549 1.05392 0.97114 1.20573 0.93574 0.96810 0.96308 1.21165 1.01957 1.06799 0.95361 1.19369 0.91783 0.92404 0.86520 1.83974 1.24176 1.70949 1.29453 1.21329 0.83622 1.35667 1.06010 0.89127 1.25270 0.99998 0.96502 0.94816 1.70039 1.36629 1.36378 1.07115 0.85720 0.80734 0.79070 0.77960 1.19935 1.20329 1.19201 1.20138 0.94149 1.07918 0.99119 1.20390 0.97612 0.98031 0.92866 0.93110 0.93133 0.90322 0.74695 0.75773 0.78510 0.95754 0.91400 0.87519 0.85671 0.92150 0.86827 0.88019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 10.09 59.85 0.60 1.14 16 2 N -0.73 -7.10 5.82 -68.59 -0.40 -7.50 16 3 C 0.61 7.76 8.63 -320.09 -2.76 4.99 16 4 N -0.90 -8.68 8.77 30.14 0.26 -8.42 16 5 N -0.65 -10.43 10.60 -62.96 -0.67 -11.10 16 6 C 0.14 2.16 6.40 -5.19 -0.03 2.13 16 7 C -0.17 -3.28 5.47 -104.57 -0.57 -3.85 16 8 C -0.05 -1.10 9.69 -39.61 -0.38 -1.49 16 9 C -0.23 -5.47 9.17 -39.39 -0.36 -5.84 16 10 C 0.15 3.92 6.65 -39.10 -0.26 3.66 16 11 O -0.18 -5.43 9.76 0.04 0.00 -5.43 16 12 C -0.39 -11.34 9.49 30.89 0.29 -11.04 16 13 H 0.09 2.45 5.20 -52.48 -0.27 2.18 16 14 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 15 N -0.87 -26.13 13.67 55.48 0.76 -25.37 16 16 Si 0.94 21.19 29.55 -169.99 -5.02 16.16 16 17 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 C -0.19 -4.39 9.99 -39.39 -0.39 -4.79 16 21 C -0.07 -1.36 9.69 -39.61 -0.38 -1.75 16 22 H 0.05 0.28 7.94 -51.93 -0.41 -0.13 16 23 H 0.05 0.25 8.06 -51.93 -0.42 -0.17 16 24 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.42 3.94 8.94 -40.82 -0.37 3.57 16 26 H 0.41 3.98 6.21 -40.82 -0.25 3.73 16 27 H 0.39 2.69 7.38 -40.82 -0.30 2.39 16 28 H 0.02 0.33 5.39 -51.93 -0.28 0.05 16 29 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 30 H 0.11 1.95 8.06 -52.48 -0.42 1.53 16 31 H 0.13 2.92 5.64 -52.49 -0.30 2.63 16 32 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.11 2.47 8.06 -52.49 -0.42 2.05 16 34 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 293.73 15.07 4.43 4.43 Total: -1.00 -34.29 293.73 -8.83 -43.12 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -3.85 Total: 9.95 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -4.35 Total: -15.85 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.04 Total: -52.39 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: 0.00 Total: -5.43 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -34.29 -8.83 -43.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171043159.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.216 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds