Wall clock time and date at job start Thu Apr 9 2020 12:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37484 * 119.99836 * 2 1 4 4 N 1.37483 * 120.00078 * 359.97438 * 3 2 1 5 5 N 1.30342 * 120.00026 * 180.02562 * 3 2 1 6 6 C 1.46494 * 120.00040 * 173.80260 * 5 3 2 7 7 C 1.50708 * 109.47137 * 114.32818 * 6 5 3 8 8 C 1.38302 * 119.93037 * 90.00293 * 7 6 5 9 9 C 1.38095 * 120.06991 * 180.02562 * 8 7 6 10 10 C 1.38884 * 119.92867 * 359.96916 * 9 8 7 11 11 O 1.35753 * 120.06976 * 180.02562 * 10 9 8 12 12 C 1.34830 * 116.99808 * 5.43466 * 11 10 9 13 13 H 1.08006 * 120.00015 * 354.91684 * 12 11 10 14 14 C 1.38656 * 119.99926 * 174.91067 * 12 11 10 15 15 N 1.31551 * 120.00097 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00012 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47210 * 90.00175 * 16 14 12 18 18 H 1.48499 * 109.47008 * 209.99935 * 16 14 12 19 19 H 1.48494 * 109.47307 * 330.00240 * 16 14 12 20 20 C 1.38881 * 119.86086 * 0.27904 * 10 9 8 21 21 C 1.38100 * 119.93018 * 359.44757 * 20 10 9 22 22 H 1.09000 * 109.47145 * 300.00397 * 1 2 3 23 23 H 1.09003 * 109.47247 * 59.99907 * 1 2 3 24 24 H 1.09002 * 109.47052 * 180.02562 * 1 2 3 25 25 H 0.96991 * 119.99971 * 179.97438 * 2 1 3 26 26 H 0.96998 * 119.99920 * 184.98121 * 4 3 2 27 27 H 0.96999 * 119.99939 * 4.99001 * 4 3 2 28 28 H 1.08999 * 109.47476 * 354.32999 * 6 5 3 29 29 H 1.09001 * 109.46879 * 234.32448 * 6 5 3 30 30 H 1.08004 * 119.96233 * 359.97438 * 8 7 6 31 31 H 1.07995 * 120.03660 * 179.97438 * 9 8 7 32 32 H 0.96997 * 120.00310 * 180.02562 * 15 14 12 33 33 H 1.08001 * 120.03093 * 179.72264 * 20 10 9 34 34 H 1.07998 * 119.96459 * 180.27470 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1524 1.1907 0.0000 4 7 1.4650 2.3813 -0.0005 5 7 3.4559 1.1907 -0.0005 6 6 4.1882 2.4520 -0.1375 7 6 4.9468 2.7331 1.1341 8 6 6.2399 2.2658 1.2838 9 6 6.9374 2.5212 2.4480 10 6 6.3394 3.2487 3.4687 11 8 7.0227 3.5019 4.6141 12 6 8.3145 3.1177 4.6538 13 1 8.7375 2.5597 3.8315 14 6 9.0999 3.4390 5.7504 15 7 8.5846 4.1183 6.7522 16 14 10.8897 2.9073 5.8052 17 1 11.7390 3.9646 5.2001 18 1 11.2989 2.6910 7.2162 19 1 11.0543 1.6437 5.0428 20 6 5.0390 3.7122 3.3173 21 6 4.3487 3.4583 2.1484 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.9500 -0.8400 0.0004 26 1 1.9473 3.2197 -0.0735 27 1 0.4977 2.3829 0.0722 28 1 3.4842 3.2623 -0.3271 29 1 4.8886 2.3770 -0.9693 30 1 6.7042 1.6998 0.4898 31 1 7.9470 2.1556 2.5645 32 1 9.1341 4.3434 7.5191 33 1 4.5697 4.2744 4.1111 34 1 3.3390 3.8222 2.0283 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171043159.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:12 Heat of formation + Delta-G solvation = 11.578298 kcal Electronic energy + Delta-G solvation = -17171.042694 eV Core-core repulsion = 14297.294414 eV Total energy + Delta-G solvation = -2873.748280 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.78911 -39.51966 -38.23307 -35.17568 -34.26014 -32.87435 -31.77318 -30.91017 -27.95132 -27.13250 -25.20320 -23.60675 -22.26298 -21.01190 -19.83590 -18.84234 -18.61733 -17.56176 -16.47834 -16.40113 -16.19529 -15.90018 -15.50337 -15.35410 -14.99811 -14.60701 -14.42359 -14.19507 -13.73668 -13.39983 -13.04852 -12.98450 -12.80098 -12.43473 -12.30254 -12.18920 -12.10439 -11.17773 -10.80108 -10.05988 -9.90357 -9.76870 -8.90746 -8.59170 -8.46851 -6.15020 0.60332 0.71429 1.34552 1.44238 1.52432 2.12553 2.18386 2.27207 2.83804 3.14787 3.28723 3.52609 4.05354 4.16436 4.28371 4.37004 4.47037 4.60754 4.71343 4.76627 4.82066 4.95338 4.99258 5.09498 5.17188 5.31896 5.59260 5.72341 5.78198 5.87394 6.03382 6.11192 6.24774 6.60857 6.97728 7.18019 7.78880 7.83031 8.76614 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.045696 B = 0.003960 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.599984 B = 7069.801984 C = 7196.638073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.732 5.732 3 C 0.617 3.383 4 N -0.886 5.886 5 N -0.701 5.701 6 C 0.140 3.860 7 C -0.150 4.150 8 C -0.059 4.059 9 C -0.242 4.242 10 C 0.110 3.890 11 O -0.234 6.234 12 C -0.415 4.415 13 H 0.099 0.901 14 C -0.023 4.023 15 N -0.922 5.922 16 Si 1.020 2.980 17 H -0.262 1.262 18 H -0.269 1.269 19 H -0.254 1.254 20 C -0.204 4.204 21 C -0.062 4.062 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.099 0.901 25 H 0.416 0.584 26 H 0.410 0.590 27 H 0.402 0.598 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.131 0.869 31 H 0.117 0.883 32 H 0.273 0.727 33 H 0.113 0.887 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.662 -5.709 -15.507 22.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.376 5.376 3 C 0.251 3.749 4 N -0.446 5.446 5 N -0.447 5.447 6 C 0.009 3.991 7 C -0.151 4.151 8 C -0.078 4.078 9 C -0.261 4.261 10 C 0.060 3.940 11 O -0.141 6.141 12 C -0.491 4.491 13 H 0.116 0.884 14 C -0.220 4.220 15 N -0.560 5.560 16 Si 0.839 3.161 17 H -0.187 1.187 18 H -0.194 1.194 19 H -0.178 1.178 20 C -0.223 4.223 21 C -0.081 4.081 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.118 0.882 25 H 0.252 0.748 26 H 0.244 0.756 27 H 0.233 0.767 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.149 0.851 31 H 0.135 0.865 32 H 0.082 0.918 33 H 0.131 0.869 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.140 -6.051 -15.074 22.205 hybrid contribution 0.466 0.683 0.563 1.001 sum -14.674 -5.368 -14.511 21.324 Atomic orbital electron populations 1.21757 0.77667 1.04805 1.01497 1.43843 1.06750 1.04390 1.82588 1.19158 0.87124 0.81742 0.86909 1.43054 1.10940 1.06152 1.84441 1.72596 1.03211 1.26874 1.41972 1.20201 0.95585 0.90578 0.92726 1.19908 0.94885 1.02138 0.98180 1.20890 0.94310 0.96841 0.95722 1.21246 1.01963 1.06792 0.96090 1.19893 0.93042 0.94370 0.86684 1.83934 1.24873 1.73379 1.31864 1.21823 0.84100 1.36358 1.06847 0.88362 1.26600 1.05223 0.96262 0.93948 1.70182 1.38900 1.38710 1.08225 0.84577 0.73839 0.79225 0.78493 1.18676 1.19385 1.17814 1.20421 0.93393 1.07921 1.00567 1.20773 0.98934 0.97038 0.91328 0.92625 0.91821 0.88226 0.74752 0.75611 0.76712 0.93122 0.91172 0.85123 0.86513 0.91815 0.86871 0.84150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.09 127.77 1.29 1.97 16 2 N -0.73 -11.93 5.82 -370.91 -2.16 -14.09 16 3 C 0.62 13.58 8.63 260.54 2.25 15.83 16 4 N -0.89 -13.65 8.77 -58.57 -0.51 -14.17 16 5 N -0.70 -20.45 10.60 -353.10 -3.74 -24.20 16 6 C 0.14 3.98 6.40 85.64 0.55 4.53 16 7 C -0.15 -5.37 5.47 -19.83 -0.11 -5.48 16 8 C -0.06 -2.36 9.69 22.25 0.22 -2.14 16 9 C -0.24 -11.59 9.17 22.39 0.21 -11.38 16 10 C 0.11 5.89 6.65 22.58 0.15 6.04 16 11 O -0.23 -14.79 9.76 -22.77 -0.22 -15.02 16 12 C -0.42 -25.34 9.49 67.92 0.64 -24.69 16 13 H 0.10 5.57 5.20 -2.91 -0.02 5.55 16 14 C -0.02 -1.36 5.49 84.83 0.47 -0.90 16 15 N -0.92 -58.18 13.67 21.61 0.30 -57.89 16 16 Si 1.02 44.41 29.55 68.60 2.03 46.43 16 17 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 18 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 19 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 20 C -0.20 -9.34 9.99 22.39 0.22 -9.11 16 21 C -0.06 -2.29 9.69 22.25 0.22 -2.07 16 22 H 0.06 0.42 7.94 -2.39 -0.02 0.40 16 23 H 0.06 0.37 8.06 -2.39 -0.02 0.35 16 24 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.42 6.85 8.94 -92.72 -0.83 6.02 16 26 H 0.41 6.25 6.21 -92.71 -0.58 5.67 16 27 H 0.40 3.94 7.38 -92.71 -0.68 3.25 16 28 H 0.05 1.16 5.39 -2.39 -0.01 1.14 16 29 H 0.07 1.96 8.08 -2.39 -0.02 1.94 16 30 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 31 H 0.12 5.66 5.64 -2.91 -0.02 5.65 16 32 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 33 H 0.11 5.07 8.06 -2.91 -0.02 5.04 16 34 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -78.53 293.73 0.85 -77.68 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: -0.93 Total: 28.65 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: 6.10 Total: -27.41 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -6.12 Total: -110.34 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.22 Total: -15.02 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -78.53 0.85 -77.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171043159.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.259 kcal (2) G-P(sol) polarization free energy of solvation -78.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds