Wall clock time and date at job start Thu Apr 9 2020 12:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.91452 * 2 1 4 4 C 1.55448 * 111.11787 * 236.01156 * 2 1 3 5 5 C 1.54321 * 102.96961 * 206.45980 * 4 2 1 6 6 H 1.08998 * 110.01151 * 262.70109 * 5 4 2 7 7 C 1.50700 * 109.88135 * 141.60820 * 5 4 2 8 8 C 1.38219 * 120.01243 * 265.46647 * 7 5 4 9 9 C 1.38221 * 120.02444 * 179.72567 * 8 7 5 10 10 C 1.38266 * 120.05227 * 0.54854 * 9 8 7 11 11 C 1.38175 * 120.02553 * 359.72165 * 10 9 8 12 12 C 1.38434 * 120.01313 * 85.74025 * 7 5 4 13 13 F 1.35106 * 120.02460 * 0.02562 * 12 7 5 14 14 N 1.47026 * 107.26791 * 22.19024 * 5 4 2 15 15 C 1.36941 * 125.64206 * 181.07813 * 14 5 4 16 16 H 1.07996 * 120.00459 * 359.97438 * 15 14 5 17 17 C 1.38815 * 119.99408 * 180.02562 * 15 14 5 18 18 N 1.31617 * 119.99985 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99927 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47294 * 89.99647 * 19 17 15 21 21 H 1.48497 * 109.47254 * 210.00512 * 19 17 15 22 22 H 1.48503 * 109.46897 * 330.00038 * 19 17 15 23 23 C 1.47419 * 108.70576 * 1.06162 * 14 5 4 24 24 H 1.09000 * 109.47194 * 297.54464 * 1 2 3 25 25 H 1.09001 * 109.47578 * 57.54908 * 1 2 3 26 26 H 1.09003 * 109.46933 * 177.54637 * 1 2 3 27 27 H 1.08998 * 110.70855 * 88.08785 * 4 2 1 28 28 H 1.08998 * 110.85957 * 324.90400 * 4 2 1 29 29 H 1.08007 * 119.98921 * 359.97438 * 8 7 5 30 30 H 1.08002 * 119.97643 * 180.27157 * 9 8 7 31 31 H 1.07996 * 119.98919 * 179.74799 * 10 9 8 32 32 H 1.08002 * 120.01566 * 180.02562 * 11 10 9 33 33 H 0.97011 * 119.99705 * 179.97438 * 18 17 15 34 34 H 1.09002 * 110.36926 * 94.70918 * 23 14 5 35 35 H 1.08995 * 110.36556 * 216.92202 * 23 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0901 -0.8106 -1.2023 5 6 3.4707 -1.2757 -0.6935 6 1 4.2480 -0.6034 -1.0568 7 6 3.7452 -2.6797 -1.1671 8 6 3.4450 -3.7553 -0.3526 9 6 3.6914 -5.0434 -0.7890 10 6 4.2489 -5.2572 -2.0361 11 6 4.5551 -4.1833 -2.8499 12 6 4.3034 -2.8925 -2.4159 13 9 4.6029 -1.8417 -3.2105 14 7 3.4280 -1.2429 0.7758 15 6 4.4642 -1.5642 1.6116 16 1 5.4134 -1.8742 1.2005 17 6 4.2938 -1.4923 2.9874 18 7 3.1364 -1.1159 3.4884 19 14 5.7073 -1.9298 4.1276 20 1 6.5082 -0.7124 4.4128 21 1 5.1673 -2.4762 5.3984 22 1 6.5702 -2.9489 3.4778 23 6 2.0853 -0.8067 1.2002 24 1 -0.3633 0.4752 0.9112 25 1 -0.3634 0.5514 -0.8672 26 1 -0.3633 -1.0268 -0.0440 27 1 2.1972 -0.1736 -2.0803 28 1 1.4525 -1.6664 -1.4241 29 1 3.0139 -3.5893 0.6237 30 1 3.4524 -5.8834 -0.1537 31 1 4.4447 -6.2639 -2.3745 32 1 4.9902 -4.3505 -3.8242 33 1 3.0173 -1.0661 4.4499 34 1 1.4520 -1.6705 1.4023 35 1 2.1542 -0.1726 2.0841 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174043067.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:14 Heat of formation + Delta-G solvation = -0.604186 kcal Electronic energy + Delta-G solvation = -18603.958050 eV Core-core repulsion = 15709.761537 eV Total energy + Delta-G solvation = -2894.196514 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.40479 -38.95913 -37.16893 -33.01090 -31.97881 -30.00917 -29.69652 -27.64493 -25.69060 -23.88905 -22.34921 -21.69420 -19.49169 -19.36501 -17.19466 -16.81278 -15.94232 -15.29601 -15.09891 -14.99543 -14.14843 -13.72279 -13.49216 -13.13405 -12.76078 -12.67817 -12.26577 -11.85380 -11.76704 -11.62556 -11.51094 -11.04690 -10.86869 -10.80796 -10.63904 -10.15747 -10.07685 -9.82479 -9.75425 -9.38438 -8.72714 -8.36075 -8.10607 -6.89939 -5.68476 -3.11468 1.65885 1.76573 3.38223 3.44287 3.45536 4.12280 4.45413 4.75586 5.15700 5.19573 5.35975 5.44833 5.51782 5.62974 5.64472 5.70331 5.87671 5.91935 6.04752 6.22879 6.31504 6.32981 6.45464 6.47499 6.61057 6.65624 6.66865 6.79280 6.91238 6.98242 7.23223 7.45452 7.54337 7.64289 7.85011 8.33246 9.19462 9.78965 10.43390 11.34265 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.016768 B = 0.009977 C = 0.007312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.428776 B = 2805.808643 C = 3828.294237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.123 4.123 3 H 0.068 0.932 4 C -0.113 4.113 5 C 0.193 3.807 6 H 0.048 0.952 7 C -0.110 4.110 8 C -0.053 4.053 9 C -0.141 4.141 10 C -0.109 4.109 11 C -0.168 4.168 12 C 0.087 3.913 13 F -0.146 7.146 14 N -0.591 5.591 15 C -0.220 4.220 16 H 0.076 0.924 17 C -0.007 4.007 18 N -0.919 5.919 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.158 3.842 24 H 0.053 0.947 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.146 0.854 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.252 0.748 34 H 0.013 0.987 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.288 -3.773 -9.359 10.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.142 4.142 3 H 0.087 0.913 4 C -0.151 4.151 5 C 0.085 3.915 6 H 0.065 0.935 7 C -0.113 4.113 8 C -0.071 4.071 9 C -0.159 4.159 10 C -0.128 4.128 11 C -0.187 4.187 12 C 0.067 3.933 13 F -0.124 7.124 14 N -0.314 5.314 15 C -0.348 4.348 16 H 0.094 0.906 17 C -0.203 4.203 18 N -0.567 5.567 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.207 1.207 23 C 0.033 3.967 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.164 0.836 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.227 -3.734 -9.117 10.101 hybrid contribution 0.940 -0.228 0.381 1.040 sum -1.286 -3.962 -8.736 9.678 Atomic orbital electron populations 1.21609 0.95646 1.01101 1.00625 1.22670 0.94544 0.99462 0.97572 0.91327 1.22640 0.95693 0.99196 0.97585 1.19886 0.95688 0.89344 0.86628 0.93457 1.21085 0.98436 0.99880 0.91894 1.21206 0.95696 0.90385 0.99785 1.21237 1.00983 0.97449 0.96213 1.20831 0.99580 0.97899 0.94442 1.20941 1.05173 0.91336 1.01228 1.17678 1.02008 0.83560 0.90014 1.91430 1.91339 1.56503 1.73166 1.44584 1.10556 1.78154 0.98083 1.19027 0.90979 1.37832 0.86949 0.90638 1.24752 0.97130 1.01863 0.96560 1.69814 1.22170 1.53591 1.11160 0.86125 0.81291 0.78051 0.80410 1.21584 1.21649 1.20697 1.22013 0.83766 0.95994 0.94903 0.92777 0.93806 0.93114 0.92178 0.91878 0.83634 0.86162 0.86117 0.85839 0.93708 0.96873 0.87540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 9.31 37.16 0.35 -1.74 16 2 C -0.12 -2.33 3.65 -88.31 -0.32 -2.65 16 3 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.11 -2.08 5.95 -24.74 -0.15 -2.23 16 5 C 0.19 4.11 3.10 -68.10 -0.21 3.90 16 6 H 0.05 1.07 7.83 -51.93 -0.41 0.66 16 7 C -0.11 -2.18 4.74 -104.56 -0.50 -2.68 16 8 C -0.05 -1.03 8.82 -39.59 -0.35 -1.38 16 9 C -0.14 -2.29 10.04 -39.58 -0.40 -2.69 16 10 C -0.11 -1.59 10.04 -39.59 -0.40 -1.99 16 11 C -0.17 -2.60 10.03 -39.51 -0.40 -3.00 16 12 C 0.09 1.58 7.25 -39.42 -0.29 1.30 16 13 F -0.15 -2.65 16.59 2.25 0.04 -2.61 16 14 N -0.59 -14.51 2.18 -163.88 -0.36 -14.87 16 15 C -0.22 -5.90 8.98 -15.06 -0.14 -6.04 16 16 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 17 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 18 N -0.92 -25.86 10.09 55.49 0.56 -25.30 16 19 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.16 3.70 5.35 -2.53 -0.01 3.68 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 1.13 7.73 -51.93 -0.40 0.73 16 29 H 0.15 3.23 6.91 -52.48 -0.36 2.87 16 30 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 31 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.01 0.33 8.04 -51.93 -0.42 -0.09 16 35 H 0.11 2.83 5.87 -51.93 -0.30 2.52 16 LS Contribution 289.84 15.07 4.37 4.37 Total: -1.00 -27.98 289.84 -8.14 -36.12 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -4.82 Total: 1.33 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -2.90 Total: -15.82 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.20 Total: -40.17 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.98 -8.14 -36.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174043067.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.512 kcal (2) G-P(sol) polarization free energy of solvation -27.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds