Wall clock time and date at job start Thu Apr 9 2020 12:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.91452 * 2 1 4 4 C 1.55448 * 111.11787 * 236.01156 * 2 1 3 5 5 C 1.54321 * 102.96961 * 206.45980 * 4 2 1 6 6 H 1.08998 * 110.01151 * 262.70109 * 5 4 2 7 7 C 1.50700 * 109.88135 * 141.60820 * 5 4 2 8 8 C 1.38219 * 120.01243 * 265.46647 * 7 5 4 9 9 C 1.38221 * 120.02444 * 179.72567 * 8 7 5 10 10 C 1.38266 * 120.05227 * 0.54854 * 9 8 7 11 11 C 1.38175 * 120.02553 * 359.72165 * 10 9 8 12 12 C 1.38434 * 120.01313 * 85.74025 * 7 5 4 13 13 F 1.35106 * 120.02460 * 0.02562 * 12 7 5 14 14 N 1.47026 * 107.26791 * 22.19024 * 5 4 2 15 15 C 1.36941 * 125.64206 * 181.07813 * 14 5 4 16 16 H 1.07996 * 120.00459 * 359.97438 * 15 14 5 17 17 C 1.38815 * 119.99408 * 180.02562 * 15 14 5 18 18 N 1.31617 * 119.99985 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99927 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47294 * 89.99647 * 19 17 15 21 21 H 1.48497 * 109.47254 * 210.00512 * 19 17 15 22 22 H 1.48503 * 109.46897 * 330.00038 * 19 17 15 23 23 C 1.47419 * 108.70576 * 1.06162 * 14 5 4 24 24 H 1.09000 * 109.47194 * 297.54464 * 1 2 3 25 25 H 1.09001 * 109.47578 * 57.54908 * 1 2 3 26 26 H 1.09003 * 109.46933 * 177.54637 * 1 2 3 27 27 H 1.08998 * 110.70855 * 88.08785 * 4 2 1 28 28 H 1.08998 * 110.85957 * 324.90400 * 4 2 1 29 29 H 1.08007 * 119.98921 * 359.97438 * 8 7 5 30 30 H 1.08002 * 119.97643 * 180.27157 * 9 8 7 31 31 H 1.07996 * 119.98919 * 179.74799 * 10 9 8 32 32 H 1.08002 * 120.01566 * 180.02562 * 11 10 9 33 33 H 0.97011 * 119.99705 * 179.97438 * 18 17 15 34 34 H 1.09002 * 110.36926 * 94.70918 * 23 14 5 35 35 H 1.08995 * 110.36556 * 216.92202 * 23 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0901 -0.8106 -1.2023 5 6 3.4707 -1.2757 -0.6935 6 1 4.2480 -0.6034 -1.0568 7 6 3.7452 -2.6797 -1.1671 8 6 3.4450 -3.7553 -0.3526 9 6 3.6914 -5.0434 -0.7890 10 6 4.2489 -5.2572 -2.0361 11 6 4.5551 -4.1833 -2.8499 12 6 4.3034 -2.8925 -2.4159 13 9 4.6029 -1.8417 -3.2105 14 7 3.4280 -1.2429 0.7758 15 6 4.4642 -1.5642 1.6116 16 1 5.4134 -1.8742 1.2005 17 6 4.2938 -1.4923 2.9874 18 7 3.1364 -1.1159 3.4884 19 14 5.7073 -1.9298 4.1276 20 1 6.5082 -0.7124 4.4128 21 1 5.1673 -2.4762 5.3984 22 1 6.5702 -2.9489 3.4778 23 6 2.0853 -0.8067 1.2002 24 1 -0.3633 0.4752 0.9112 25 1 -0.3634 0.5514 -0.8672 26 1 -0.3633 -1.0268 -0.0440 27 1 2.1972 -0.1736 -2.0803 28 1 1.4525 -1.6664 -1.4241 29 1 3.0139 -3.5893 0.6237 30 1 3.4524 -5.8834 -0.1537 31 1 4.4447 -6.2639 -2.3745 32 1 4.9902 -4.3505 -3.8242 33 1 3.0173 -1.0661 4.4499 34 1 1.4520 -1.6705 1.4023 35 1 2.1542 -0.1726 2.0841 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174043067.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:14 Heat of formation + Delta-G solvation = -13.968707 kcal Electronic energy + Delta-G solvation = -18604.537580 eV Core-core repulsion = 15709.761537 eV Total energy + Delta-G solvation = -2894.776043 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.79623 -40.46774 -38.70178 -34.90272 -33.52870 -31.47342 -31.32817 -29.18454 -27.50695 -25.56757 -23.81801 -23.14759 -21.14203 -20.99293 -18.90854 -18.39938 -17.50195 -16.84192 -16.56224 -16.50158 -15.89615 -15.41269 -14.95450 -14.60703 -14.23275 -14.14712 -13.87291 -13.46741 -13.32270 -13.19922 -13.00183 -12.76128 -12.71277 -12.37470 -12.10811 -11.96945 -11.74931 -11.59518 -11.37276 -11.12414 -10.74881 -9.74978 -9.48757 -8.88013 -7.75957 -5.20619 0.31015 0.43345 1.44845 1.45606 1.54214 2.47725 2.77525 3.31140 3.42038 3.63693 3.78899 3.98744 4.04168 4.13973 4.21690 4.28200 4.47648 4.51119 4.63731 4.73933 4.82164 4.93821 5.05641 5.12858 5.15220 5.22697 5.30532 5.35900 5.38196 5.51302 5.57903 5.73811 5.77536 5.85963 6.09893 6.32421 7.12500 7.78260 8.42658 9.24780 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.016768 B = 0.009977 C = 0.007312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.428776 B = 2805.808643 C = 3828.294237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.114 4.114 3 H 0.066 0.934 4 C -0.102 4.102 5 C 0.187 3.813 6 H 0.029 0.971 7 C -0.131 4.131 8 C -0.076 4.076 9 C -0.138 4.138 10 C -0.093 4.093 11 C -0.157 4.157 12 C 0.072 3.928 13 F -0.149 7.149 14 N -0.606 5.606 15 C -0.222 4.222 16 H 0.068 0.932 17 C -0.059 4.059 18 N -0.944 5.944 19 Si 0.970 3.030 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.274 1.274 23 C 0.164 3.836 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.142 0.858 31 H 0.167 0.833 32 H 0.158 0.842 33 H 0.247 0.753 34 H -0.010 1.010 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.948 -5.280 -11.513 12.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.133 4.133 3 H 0.085 0.915 4 C -0.140 4.140 5 C 0.080 3.920 6 H 0.047 0.953 7 C -0.134 4.134 8 C -0.095 4.095 9 C -0.156 4.156 10 C -0.111 4.111 11 C -0.175 4.175 12 C 0.053 3.947 13 F -0.128 7.128 14 N -0.329 5.329 15 C -0.351 4.351 16 H 0.085 0.915 17 C -0.252 4.252 18 N -0.593 5.593 19 Si 0.799 3.201 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.200 1.200 23 C 0.039 3.961 24 H 0.073 0.927 25 H 0.092 0.908 26 H 0.069 0.931 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.125 0.875 30 H 0.160 0.840 31 H 0.184 0.816 32 H 0.176 0.824 33 H 0.057 0.943 34 H 0.008 0.992 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.885 -5.243 -11.305 12.603 hybrid contribution 0.864 0.182 0.979 1.319 sum -1.021 -5.060 -10.326 11.544 Atomic orbital electron populations 1.21556 0.92832 1.01731 1.02088 1.22568 0.96812 0.98438 0.95495 0.91533 1.22597 0.93998 0.99540 0.97817 1.19973 0.96822 0.90479 0.84757 0.95286 1.20852 1.00509 0.98750 0.93319 1.20964 0.97699 0.92232 0.98596 1.21503 1.00186 0.96452 0.97463 1.21309 0.97052 0.99805 0.92908 1.21368 1.03561 0.90018 1.02564 1.17834 1.02633 0.84739 0.89534 1.91417 1.91419 1.56949 1.73016 1.44738 1.10344 1.78189 0.99613 1.19155 0.91326 1.37030 0.87591 0.91453 1.25457 0.99312 1.02609 0.97805 1.70046 1.23645 1.54820 1.10802 0.85198 0.78760 0.77721 0.78425 1.21534 1.21785 1.19951 1.21770 0.83506 0.94967 0.95821 0.92714 0.90776 0.93052 0.89917 0.91254 0.87455 0.83984 0.81558 0.82437 0.94347 0.99167 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.78 9.31 71.98 0.67 -3.11 16 2 C -0.11 -4.33 3.65 -9.30 -0.03 -4.36 16 3 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 4 C -0.10 -3.70 5.95 31.88 0.19 -3.51 16 5 C 0.19 8.15 3.10 44.59 0.14 8.29 16 6 H 0.03 1.35 7.83 -2.39 -0.02 1.34 16 7 C -0.13 -5.24 4.74 -19.82 -0.09 -5.34 16 8 C -0.08 -3.02 8.82 22.26 0.20 -2.83 16 9 C -0.14 -4.20 10.04 22.27 0.22 -3.98 16 10 C -0.09 -2.30 10.04 22.26 0.22 -2.08 16 11 C -0.16 -4.25 10.03 22.31 0.22 -4.03 16 12 C 0.07 2.51 7.25 22.38 0.16 2.67 16 13 F -0.15 -5.22 16.59 44.97 0.75 -4.47 16 14 N -0.61 -31.08 2.18 -672.41 -1.47 -32.54 16 15 C -0.22 -12.41 8.98 84.03 0.75 -11.65 16 16 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 17 C -0.06 -3.33 5.49 84.86 0.47 -2.86 16 18 N -0.94 -55.50 10.09 21.65 0.22 -55.28 16 19 Si 0.97 45.99 29.55 68.60 2.03 48.02 16 20 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 21 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 22 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 23 C 0.16 8.07 5.35 86.85 0.46 8.54 16 24 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.05 1.55 8.12 -2.39 -0.02 1.53 16 27 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.07 2.43 7.73 -2.39 -0.02 2.41 16 29 H 0.11 5.05 6.91 -2.91 -0.02 5.03 16 30 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 31 H 0.17 2.69 8.06 -2.91 -0.02 2.66 16 32 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 33 H 0.25 14.15 8.31 -92.70 -0.77 13.38 16 34 H -0.01 -0.51 8.04 -2.39 -0.02 -0.53 16 35 H 0.07 4.05 5.87 -2.39 -0.01 4.04 16 Total: -1.00 -63.48 289.84 6.18 -57.30 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 1.07 Total: 11.24 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: 3.58 Total: -24.26 kcal Atomic # 7 Polarization: -86.58 SS G_CDS: -1.25 Total: -87.83 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.75 Total: -4.47 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -63.48 6.18 -57.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174043067.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.332 kcal (2) G-P(sol) polarization free energy of solvation -63.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds