Wall clock time and date at job start Thu Apr 9 2020 12:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 110.88280 * 2 1 4 4 C 1.55400 * 110.92791 * 123.86468 * 2 1 3 5 5 C 1.54324 * 102.82602 * 82.74915 * 4 2 1 6 6 H 1.08995 * 109.88255 * 262.53104 * 5 4 2 7 7 C 1.50699 * 109.88478 * 141.51838 * 5 4 2 8 8 C 1.38217 * 120.01373 * 265.04234 * 7 5 4 9 9 C 1.38229 * 120.02544 * 179.71896 * 8 7 5 10 10 C 1.38266 * 120.04648 * 0.54893 * 9 8 7 11 11 C 1.38169 * 120.02927 * 359.73026 * 10 9 8 12 12 C 1.38434 * 120.01087 * 85.31365 * 7 5 4 13 13 F 1.35095 * 120.02714 * 359.97438 * 12 7 5 14 14 N 1.47028 * 107.40308 * 22.02192 * 5 4 2 15 15 C 1.36936 * 125.64861 * 181.16769 * 14 5 4 16 16 H 1.07996 * 119.99810 * 13.78979 * 15 14 5 17 17 C 1.38810 * 119.99834 * 193.78511 * 15 14 5 18 18 N 1.31620 * 120.00075 * 8.44274 * 17 15 14 19 19 Si 1.86804 * 119.99744 * 188.44101 * 17 15 14 20 20 H 1.48501 * 109.47151 * 94.85055 * 19 17 15 21 21 H 1.48501 * 109.46715 * 214.84792 * 19 17 15 22 22 H 1.48503 * 109.47239 * 334.84748 * 19 17 15 23 23 C 1.47425 * 108.70213 * 1.14161 * 14 5 4 24 24 H 1.09006 * 109.46568 * 182.42774 * 1 2 3 25 25 H 1.09003 * 109.46838 * 302.42166 * 1 2 3 26 26 H 1.08995 * 109.47223 * 62.42426 * 1 2 3 27 27 H 1.09000 * 110.85566 * 324.38902 * 4 2 1 28 28 H 1.08998 * 110.69873 * 201.03550 * 4 2 1 29 29 H 1.07998 * 119.98706 * 359.97438 * 8 7 5 30 30 H 1.08001 * 119.97458 * 180.29814 * 9 8 7 31 31 H 1.08006 * 119.98010 * 179.74249 * 10 9 8 32 32 H 1.08000 * 120.01216 * 180.02562 * 11 10 9 33 33 H 0.96998 * 119.99550 * 179.97438 * 18 17 15 34 34 H 1.08994 * 110.36722 * 94.70522 * 23 14 5 35 35 H 1.09000 * 110.36519 * 217.03065 * 23 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0185 0.0000 4 6 2.0851 -0.8088 1.2052 5 6 2.0301 -2.2644 0.6955 6 1 1.1251 -2.7507 1.0595 7 6 3.2443 -3.0201 1.1705 8 6 4.3543 -3.1286 0.3541 9 6 5.4703 -3.8167 0.7919 10 6 5.4734 -4.4069 2.0423 11 6 4.3628 -4.3047 2.8579 12 6 3.2462 -3.6107 2.4226 13 9 2.1600 -3.5095 3.2195 14 7 2.0148 -2.2155 -0.7739 15 6 1.9459 -3.2994 -1.6078 16 1 1.6750 -4.2676 -1.2136 17 6 2.2242 -3.1536 -2.9599 18 7 2.7135 -2.0186 -3.4125 19 14 1.9043 -4.5683 -4.1371 20 1 0.5638 -4.4049 -4.7548 21 1 2.9417 -4.5722 -5.1997 22 1 1.9532 -5.8524 -3.3928 23 6 2.0853 -0.8061 -1.2007 24 1 -0.3633 -1.0268 0.0435 25 1 -0.3633 0.5510 0.8675 26 1 -0.3633 0.4757 -0.9109 27 1 1.4502 -0.6831 2.0823 28 1 3.1116 -0.5160 1.4257 29 1 4.3512 -2.6720 -0.6246 30 1 6.3390 -3.8969 0.1552 31 1 6.3444 -4.9479 2.3816 32 1 4.3656 -4.7655 3.8346 33 1 2.9083 -1.9170 -4.3572 34 1 3.1180 -0.5223 -1.4031 35 1 1.4668 -0.6458 -2.0838 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174043078.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:16 Heat of formation + Delta-G solvation = -2.953048 kcal Electronic energy + Delta-G solvation = -18712.907879 eV Core-core repulsion = 15818.609512 eV Total energy + Delta-G solvation = -2894.298368 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.37439 -38.96001 -37.23560 -32.92089 -31.81446 -29.94258 -29.58107 -27.50936 -25.83177 -24.11704 -22.33415 -21.74205 -19.52336 -19.11365 -17.18405 -16.77648 -15.82479 -15.36807 -15.06335 -14.56674 -14.28175 -13.87021 -13.48504 -13.02020 -12.74453 -12.63562 -12.39802 -12.09168 -11.67165 -11.36721 -11.26681 -11.09320 -10.85404 -10.76910 -10.59518 -10.12329 -9.99756 -9.86901 -9.78673 -9.58189 -8.64500 -8.30420 -8.06282 -6.83280 -5.79380 -3.13796 1.71137 1.82595 3.37645 3.44533 3.45555 4.18204 4.46256 4.79866 5.18819 5.24719 5.36781 5.42631 5.52939 5.65967 5.67225 5.77352 5.89604 5.97332 6.15058 6.22821 6.26312 6.34244 6.49574 6.56536 6.66382 6.69506 6.71797 6.86857 6.96689 7.06089 7.27970 7.48053 7.52418 7.59205 7.77622 8.22417 9.16484 9.76670 10.45332 11.33081 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017483 B = 0.010189 C = 0.007513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.180253 B = 2747.457192 C = 3725.853463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.124 4.124 3 H 0.066 0.934 4 C -0.113 4.113 5 C 0.194 3.806 6 H 0.047 0.953 7 C -0.110 4.110 8 C -0.049 4.049 9 C -0.141 4.141 10 C -0.110 4.110 11 C -0.170 4.170 12 C 0.086 3.914 13 F -0.147 7.147 14 N -0.586 5.586 15 C -0.225 4.225 16 H 0.073 0.927 17 C -0.001 4.001 18 N -0.915 5.915 19 Si 0.906 3.094 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.179 3.821 24 H 0.058 0.942 25 H 0.039 0.961 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.150 0.850 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.253 0.747 34 H 0.029 0.971 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.351 0.670 9.253 9.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.143 4.143 3 H 0.084 0.916 4 C -0.151 4.151 5 C 0.086 3.914 6 H 0.064 0.936 7 C -0.114 4.114 8 C -0.067 4.067 9 C -0.159 4.159 10 C -0.128 4.128 11 C -0.189 4.189 12 C 0.066 3.934 13 F -0.125 7.125 14 N -0.310 5.310 15 C -0.354 4.354 16 H 0.091 0.909 17 C -0.198 4.198 18 N -0.561 5.561 19 Si 0.737 3.263 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.206 1.206 23 C 0.054 3.946 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.168 0.832 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.327 0.634 9.021 9.338 hybrid contribution -0.202 -0.919 -0.500 1.066 sum 2.125 -0.285 8.521 8.787 Atomic orbital electron populations 1.21618 0.95406 1.01795 0.99966 1.22639 0.95624 0.98391 0.97660 0.91563 1.22614 1.00406 0.94638 0.97466 1.19899 0.91917 0.92883 0.86687 0.93552 1.21069 0.99107 0.99421 0.91787 1.21279 0.90323 0.95198 0.99925 1.21244 0.99030 0.99539 0.96116 1.20826 0.97401 1.00101 0.94447 1.20919 0.93669 1.03097 1.01179 1.17688 0.84160 1.01567 0.89970 1.91421 1.53242 1.94797 1.73084 1.44533 1.85677 1.02688 0.98074 1.18950 1.39429 0.88294 0.88710 0.90937 1.24811 1.00332 0.97296 0.97378 1.69949 1.48032 1.24355 1.13753 0.86189 0.77512 0.81688 0.80959 1.21622 1.21743 1.20562 1.21442 0.98152 0.82056 0.92911 0.92285 0.94216 0.93180 0.91934 0.91905 0.83201 0.86226 0.86204 0.85942 0.93660 0.95284 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.24 37.16 0.34 -1.90 16 2 C -0.12 -2.29 3.72 -88.33 -0.33 -2.61 16 3 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 4 C -0.11 -2.06 5.98 -24.76 -0.15 -2.20 16 5 C 0.19 4.08 2.70 -68.10 -0.18 3.90 16 6 H 0.05 1.03 7.83 -51.93 -0.41 0.62 16 7 C -0.11 -2.22 4.75 -104.56 -0.50 -2.72 16 8 C -0.05 -0.99 8.82 -39.59 -0.35 -1.34 16 9 C -0.14 -2.38 10.05 -39.57 -0.40 -2.78 16 10 C -0.11 -1.64 10.04 -39.60 -0.40 -2.04 16 11 C -0.17 -2.68 10.03 -39.52 -0.40 -3.08 16 12 C 0.09 1.58 7.24 -39.42 -0.29 1.29 16 13 F -0.15 -2.68 16.59 2.25 0.04 -2.64 16 14 N -0.59 -14.11 2.17 -163.88 -0.36 -14.47 16 15 C -0.23 -5.99 8.91 -15.06 -0.13 -6.13 16 16 H 0.07 1.96 7.84 -52.49 -0.41 1.55 16 17 C 0.00 -0.03 5.40 -17.43 -0.09 -0.12 16 18 N -0.91 -25.52 10.80 55.49 0.60 -24.92 16 19 Si 0.91 21.67 29.56 -169.99 -5.03 16.65 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.18 4.13 4.84 -2.53 -0.01 4.11 16 24 H 0.06 1.11 7.82 -51.93 -0.41 0.71 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.06 1.03 8.05 -51.93 -0.42 0.61 16 28 H 0.06 1.12 7.84 -51.93 -0.41 0.71 16 29 H 0.15 3.48 6.89 -52.49 -0.36 3.12 16 30 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 31 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 32 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 33 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.03 0.73 8.00 -51.93 -0.42 0.31 16 35 H 0.07 1.69 7.07 -51.93 -0.37 1.32 16 LS Contribution 290.42 15.07 4.38 4.38 Total: -1.00 -27.60 290.42 -8.11 -35.71 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -4.87 Total: 0.90 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -2.88 Total: -15.62 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.24 Total: -39.39 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.60 -8.11 -35.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174043078.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.760 kcal (2) G-P(sol) polarization free energy of solvation -27.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds