Wall clock time and date at job start Thu Apr 9 2020 12:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 110.88280 * 2 1 4 4 C 1.55400 * 110.92791 * 123.86468 * 2 1 3 5 5 C 1.54324 * 102.82602 * 82.74915 * 4 2 1 6 6 H 1.08995 * 109.88255 * 262.53104 * 5 4 2 7 7 C 1.50699 * 109.88478 * 141.51838 * 5 4 2 8 8 C 1.38217 * 120.01373 * 265.04234 * 7 5 4 9 9 C 1.38229 * 120.02544 * 179.71896 * 8 7 5 10 10 C 1.38266 * 120.04648 * 0.54893 * 9 8 7 11 11 C 1.38169 * 120.02927 * 359.73026 * 10 9 8 12 12 C 1.38434 * 120.01087 * 85.31365 * 7 5 4 13 13 F 1.35095 * 120.02714 * 359.97438 * 12 7 5 14 14 N 1.47028 * 107.40308 * 22.02192 * 5 4 2 15 15 C 1.36936 * 125.64861 * 181.16769 * 14 5 4 16 16 H 1.07996 * 119.99810 * 13.78979 * 15 14 5 17 17 C 1.38810 * 119.99834 * 193.78511 * 15 14 5 18 18 N 1.31620 * 120.00075 * 8.44274 * 17 15 14 19 19 Si 1.86804 * 119.99744 * 188.44101 * 17 15 14 20 20 H 1.48501 * 109.47151 * 94.85055 * 19 17 15 21 21 H 1.48501 * 109.46715 * 214.84792 * 19 17 15 22 22 H 1.48503 * 109.47239 * 334.84748 * 19 17 15 23 23 C 1.47425 * 108.70213 * 1.14161 * 14 5 4 24 24 H 1.09006 * 109.46568 * 182.42774 * 1 2 3 25 25 H 1.09003 * 109.46838 * 302.42166 * 1 2 3 26 26 H 1.08995 * 109.47223 * 62.42426 * 1 2 3 27 27 H 1.09000 * 110.85566 * 324.38902 * 4 2 1 28 28 H 1.08998 * 110.69873 * 201.03550 * 4 2 1 29 29 H 1.07998 * 119.98706 * 359.97438 * 8 7 5 30 30 H 1.08001 * 119.97458 * 180.29814 * 9 8 7 31 31 H 1.08006 * 119.98010 * 179.74249 * 10 9 8 32 32 H 1.08000 * 120.01216 * 180.02562 * 11 10 9 33 33 H 0.96998 * 119.99550 * 179.97438 * 18 17 15 34 34 H 1.08994 * 110.36722 * 94.70522 * 23 14 5 35 35 H 1.09000 * 110.36519 * 217.03065 * 23 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0185 0.0000 4 6 2.0851 -0.8088 1.2052 5 6 2.0301 -2.2644 0.6955 6 1 1.1251 -2.7507 1.0595 7 6 3.2443 -3.0201 1.1705 8 6 4.3543 -3.1286 0.3541 9 6 5.4703 -3.8167 0.7919 10 6 5.4734 -4.4069 2.0423 11 6 4.3628 -4.3047 2.8579 12 6 3.2462 -3.6107 2.4226 13 9 2.1600 -3.5095 3.2195 14 7 2.0148 -2.2155 -0.7739 15 6 1.9459 -3.2994 -1.6078 16 1 1.6750 -4.2676 -1.2136 17 6 2.2242 -3.1536 -2.9599 18 7 2.7135 -2.0186 -3.4125 19 14 1.9043 -4.5683 -4.1371 20 1 0.5638 -4.4049 -4.7548 21 1 2.9417 -4.5722 -5.1997 22 1 1.9532 -5.8524 -3.3928 23 6 2.0853 -0.8061 -1.2007 24 1 -0.3633 -1.0268 0.0435 25 1 -0.3633 0.5510 0.8675 26 1 -0.3633 0.4757 -0.9109 27 1 1.4502 -0.6831 2.0823 28 1 3.1116 -0.5160 1.4257 29 1 4.3512 -2.6720 -0.6246 30 1 6.3390 -3.8969 0.1552 31 1 6.3444 -4.9479 2.3816 32 1 4.3656 -4.7655 3.8346 33 1 2.9083 -1.9170 -4.3572 34 1 3.1180 -0.5223 -1.4031 35 1 1.4668 -0.6458 -2.0838 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174043078.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:15 Heat of formation + Delta-G solvation = -16.042978 kcal Electronic energy + Delta-G solvation = -18713.475501 eV Core-core repulsion = 15818.609512 eV Total energy + Delta-G solvation = -2894.865990 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.77989 -40.49195 -38.75669 -34.83719 -33.34726 -31.43489 -31.26701 -29.02936 -27.60567 -25.89154 -23.82509 -23.18084 -21.23377 -20.69498 -18.86730 -18.39662 -17.28603 -16.98146 -16.50533 -16.35809 -15.74014 -15.65182 -14.93658 -14.51987 -14.39839 -14.13778 -13.97827 -13.61601 -13.15437 -13.11662 -12.98816 -12.64467 -12.61520 -12.46051 -12.15777 -11.96819 -11.66679 -11.50331 -11.39718 -11.32034 -10.66878 -9.72235 -9.46469 -8.79793 -7.86459 -5.21539 0.33058 0.46202 1.44061 1.45272 1.53609 2.48461 2.79843 3.31615 3.43775 3.65486 3.79064 3.98522 4.05345 4.16704 4.25340 4.26794 4.50770 4.53399 4.68894 4.70067 4.78023 4.91066 5.13358 5.16668 5.19186 5.27626 5.31936 5.33416 5.44394 5.49773 5.61205 5.68457 5.75624 5.81625 6.12109 6.24037 7.11424 7.77510 8.45843 9.24809 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017483 B = 0.010189 C = 0.007513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.180253 B = 2747.457192 C = 3725.853463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.114 4.114 3 H 0.090 0.910 4 C -0.103 4.103 5 C 0.190 3.810 6 H 0.032 0.968 7 C -0.132 4.132 8 C -0.074 4.074 9 C -0.141 4.141 10 C -0.094 4.094 11 C -0.158 4.158 12 C 0.073 3.927 13 F -0.148 7.148 14 N -0.598 5.598 15 C -0.226 4.226 16 H 0.063 0.937 17 C -0.049 4.049 18 N -0.940 5.940 19 Si 0.963 3.037 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.274 1.274 23 C 0.187 3.813 24 H 0.035 0.965 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.138 0.862 31 H 0.166 0.834 32 H 0.158 0.842 33 H 0.248 0.752 34 H -0.001 1.001 35 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.073 -0.106 11.559 11.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.133 4.133 3 H 0.108 0.892 4 C -0.140 4.140 5 C 0.083 3.917 6 H 0.050 0.950 7 C -0.135 4.135 8 C -0.092 4.092 9 C -0.159 4.159 10 C -0.111 4.111 11 C -0.176 4.176 12 C 0.053 3.947 13 F -0.127 7.127 14 N -0.322 5.322 15 C -0.355 4.355 16 H 0.081 0.919 17 C -0.244 4.244 18 N -0.588 5.588 19 Si 0.792 3.208 20 H -0.217 1.217 21 H -0.219 1.219 22 H -0.199 1.199 23 C 0.062 3.938 24 H 0.055 0.945 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.126 0.874 30 H 0.156 0.844 31 H 0.183 0.817 32 H 0.175 0.825 33 H 0.057 0.943 34 H 0.017 0.983 35 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.043 -0.146 11.360 11.761 hybrid contribution -0.379 -0.716 -1.140 1.399 sum 2.664 -0.862 10.220 10.596 Atomic orbital electron populations 1.21559 0.94070 1.00912 1.01583 1.22577 0.96643 0.98790 0.95281 0.89179 1.22584 1.01140 0.92467 0.97858 1.19963 0.91995 0.94932 0.84818 0.95030 1.20886 0.98690 1.00752 0.93153 1.20989 0.92276 0.97348 0.98628 1.21482 0.98344 0.98587 0.97452 1.21286 0.98451 0.98523 0.92863 1.21350 0.92423 1.01353 1.02522 1.17818 0.85135 1.02283 0.89456 1.91412 1.53541 1.94893 1.72873 1.44634 1.85540 1.02461 0.99516 1.19049 1.38437 0.88714 0.89347 0.91929 1.25444 1.00909 0.99373 0.98653 1.70117 1.49363 1.25861 1.13421 0.85291 0.76968 0.79504 0.78992 1.21671 1.21898 1.19915 1.21214 0.96034 0.82675 0.93863 0.94545 0.90764 0.93196 0.89487 0.91559 0.87431 0.84388 0.81685 0.82452 0.94291 0.98261 0.94994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.13 9.24 71.98 0.66 -3.46 16 2 C -0.11 -4.16 3.72 -9.31 -0.03 -4.19 16 3 H 0.09 2.89 8.14 -2.38 -0.02 2.87 16 4 C -0.10 -3.65 5.98 31.87 0.19 -3.46 16 5 C 0.19 8.13 2.70 44.59 0.12 8.25 16 6 H 0.03 1.43 7.83 -2.39 -0.02 1.41 16 7 C -0.13 -5.31 4.75 -19.82 -0.09 -5.40 16 8 C -0.07 -3.03 8.82 22.26 0.20 -2.83 16 9 C -0.14 -4.50 10.05 22.27 0.22 -4.28 16 10 C -0.09 -2.42 10.04 22.26 0.22 -2.19 16 11 C -0.16 -4.38 10.03 22.31 0.22 -4.16 16 12 C 0.07 2.54 7.24 22.38 0.16 2.70 16 13 F -0.15 -5.16 16.59 44.97 0.75 -4.41 16 14 N -0.60 -30.04 2.17 -672.38 -1.46 -31.50 16 15 C -0.23 -12.52 8.91 84.03 0.75 -11.78 16 16 H 0.06 3.51 7.84 -2.91 -0.02 3.49 16 17 C -0.05 -2.77 5.40 84.86 0.46 -2.31 16 18 N -0.94 -54.97 10.80 21.65 0.23 -54.74 16 19 Si 0.96 45.80 29.56 68.60 2.03 47.83 16 20 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 21 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 22 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 23 C 0.19 9.03 4.84 86.86 0.42 9.45 16 24 H 0.04 1.36 7.82 -2.38 -0.02 1.34 16 25 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.09 2.67 8.05 -2.39 -0.02 2.65 16 28 H 0.07 2.30 7.84 -2.39 -0.02 2.28 16 29 H 0.11 5.32 6.89 -2.91 -0.02 5.30 16 30 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 31 H 0.17 2.85 8.06 -2.91 -0.02 2.82 16 32 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 33 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 34 H 0.00 -0.03 8.00 -2.39 -0.02 -0.05 16 35 H 0.03 1.73 7.07 -2.39 -0.02 1.71 16 Total: -1.00 -62.80 290.42 6.12 -56.68 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 1.07 Total: 9.81 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 3.50 Total: -23.66 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -1.22 Total: -86.24 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.75 Total: -4.41 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -62.80 6.12 -56.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174043078.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.634 kcal (2) G-P(sol) polarization free energy of solvation -62.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds