Wall clock time and date at job start Thu Apr 9 2020 12:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.88880 * 2 1 4 4 C 1.55165 * 111.00426 * 236.08068 * 2 1 3 5 5 C 1.54319 * 102.93946 * 277.42637 * 4 2 1 6 6 H 1.08996 * 109.88141 * 97.22784 * 5 4 2 7 7 C 1.50701 * 110.00699 * 218.31681 * 5 4 2 8 8 C 1.38224 * 120.01421 * 99.34370 * 7 5 4 9 9 C 1.38222 * 120.02689 * 179.97438 * 8 7 5 10 10 C 1.38263 * 120.04880 * 0.02562 * 9 8 7 11 11 C 1.38171 * 120.03007 * 359.97438 * 10 9 8 12 12 C 1.38442 * 120.01275 * 279.05986 * 7 5 4 13 13 F 1.35100 * 120.02529 * 0.02562 * 12 7 5 14 14 N 1.47020 * 107.27311 * 337.80601 * 5 4 2 15 15 C 1.36936 * 125.64620 * 178.97858 * 14 5 4 16 16 H 1.07997 * 120.00341 * 359.97438 * 15 14 5 17 17 C 1.38814 * 119.99936 * 179.97438 * 15 14 5 18 18 N 1.31623 * 119.99967 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00077 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47271 * 59.99411 * 19 17 15 21 21 H 1.48507 * 109.47072 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46627 * 299.99280 * 19 17 15 23 23 C 1.47426 * 108.70587 * 358.94015 * 14 5 4 24 24 H 1.09002 * 109.47153 * 297.56874 * 1 2 3 25 25 H 1.09001 * 109.46832 * 177.57065 * 1 2 3 26 26 H 1.09004 * 109.47261 * 57.57047 * 1 2 3 27 27 H 1.08997 * 110.71954 * 35.79359 * 4 2 1 28 28 H 1.09001 * 110.71924 * 159.06441 * 4 2 1 29 29 H 1.07997 * 119.98289 * 359.95210 * 8 7 5 30 30 H 1.07993 * 119.97504 * 179.97438 * 9 8 7 31 31 H 1.08006 * 119.98561 * 179.97438 * 10 9 8 32 32 H 1.08002 * 120.01605 * 179.97438 * 11 10 9 33 33 H 0.96995 * 120.00053 * 179.97438 * 18 17 15 34 34 H 1.08993 * 110.36607 * 265.29341 * 23 14 5 35 35 H 1.08998 * 110.46164 * 143.01016 * 23 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0861 -0.8083 -1.2020 5 6 2.0285 -2.2648 -0.6953 6 1 1.1219 -2.7482 -1.0591 7 6 3.2402 -3.0244 -1.1707 8 6 4.3137 -3.2154 -0.3212 9 6 5.4249 -3.9126 -0.7567 10 6 5.4643 -4.4191 -2.0426 11 6 4.3924 -4.2295 -2.8936 12 6 3.2761 -3.5363 -2.4565 13 9 2.2253 -3.3547 -3.2860 14 7 2.0139 -2.2156 0.7740 15 6 1.9461 -3.2994 1.6081 16 1 1.8972 -4.2963 1.1955 17 6 1.9403 -3.1169 2.9842 18 7 2.0005 -1.9021 3.4872 19 14 1.8485 -4.5955 4.1222 20 1 3.0183 -5.4782 3.8823 21 1 1.8577 -4.1349 5.5340 22 1 0.5969 -5.3487 3.8550 23 6 2.0853 -0.8062 1.2006 24 1 -0.3633 0.4756 0.9110 25 1 -0.3633 -1.0268 -0.0436 26 1 -0.3634 0.5511 -0.8674 27 1 1.4524 -0.6798 -2.0795 28 1 3.1133 -0.5165 -1.4208 29 1 4.2843 -2.8195 0.6832 30 1 6.2633 -4.0610 -0.0924 31 1 6.3333 -4.9634 -2.3820 32 1 4.4236 -4.6249 -3.8982 33 1 1.9960 -1.7745 4.4487 34 1 3.1182 -0.5229 1.4025 35 1 1.4684 -0.6439 2.0844 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174043094.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:17 Heat of formation + Delta-G solvation = 0.766301 kcal Electronic energy + Delta-G solvation = -18704.640242 eV Core-core repulsion = 15810.503157 eV Total energy + Delta-G solvation = -2894.137085 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.40257 -38.99233 -37.24842 -32.92623 -31.85779 -29.99819 -29.54401 -27.48521 -25.81136 -24.13773 -22.34561 -21.76998 -19.50637 -19.07901 -17.25605 -16.78501 -15.85169 -15.38686 -15.08601 -14.63021 -14.28050 -13.82605 -13.51305 -13.00551 -12.75044 -12.66027 -12.35645 -12.07319 -11.67930 -11.40095 -11.27633 -11.07214 -10.87954 -10.73070 -10.59162 -10.14195 -10.00073 -9.85962 -9.75794 -9.42623 -8.71136 -8.35084 -8.09567 -6.89008 -5.68543 -3.11147 1.66464 1.77497 3.38687 3.43771 3.44503 4.13414 4.45361 4.76024 5.16155 5.21316 5.38673 5.45510 5.52259 5.63411 5.66613 5.80313 5.89706 5.93591 6.18444 6.24445 6.29643 6.38214 6.46371 6.54208 6.63273 6.73384 6.74985 6.90064 6.98088 7.02015 7.24731 7.47127 7.50176 7.63863 7.85649 8.33894 9.19638 9.79252 10.44003 11.34290 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017944 B = 0.010042 C = 0.007346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.001757 B = 2787.662096 C = 3810.846845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.122 4.122 3 H 0.064 0.936 4 C -0.114 4.114 5 C 0.196 3.804 6 H 0.047 0.953 7 C -0.112 4.112 8 C -0.054 4.054 9 C -0.141 4.141 10 C -0.109 4.109 11 C -0.169 4.169 12 C 0.087 3.913 13 F -0.146 7.146 14 N -0.588 5.588 15 C -0.221 4.221 16 H 0.075 0.925 17 C -0.006 4.006 18 N -0.919 5.919 19 Si 0.910 3.090 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.156 3.844 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.037 0.963 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.150 0.850 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.253 0.747 34 H 0.011 0.989 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.585 0.214 -9.219 9.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.142 4.142 3 H 0.082 0.918 4 C -0.152 4.152 5 C 0.087 3.913 6 H 0.065 0.935 7 C -0.115 4.115 8 C -0.072 4.072 9 C -0.159 4.159 10 C -0.128 4.128 11 C -0.188 4.188 12 C 0.067 3.933 13 F -0.125 7.125 14 N -0.312 5.312 15 C -0.349 4.349 16 H 0.093 0.907 17 C -0.202 4.202 18 N -0.567 5.567 19 Si 0.741 3.259 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.032 3.968 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.168 0.832 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.063 0.937 34 H 0.029 0.971 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.517 0.184 -8.973 9.639 hybrid contribution -0.061 -0.931 0.356 0.999 sum 3.456 -0.747 -8.617 9.314 Atomic orbital electron populations 1.21589 0.95344 1.01748 0.99891 1.22590 0.95724 0.98287 0.97580 0.91752 1.22579 1.00303 0.94639 0.97665 1.19837 0.91886 0.92950 0.86609 0.93519 1.21113 0.99287 0.99605 0.91489 1.21306 0.90518 0.94849 1.00501 1.21249 0.98978 0.99802 0.95900 1.20835 0.97727 1.00247 0.93958 1.20935 0.93969 1.03007 1.00851 1.17680 0.85207 1.01503 0.88893 1.91428 1.55921 1.93856 1.71246 1.44540 1.85544 1.03055 0.98021 1.18972 1.43069 0.85888 0.86958 0.90698 1.24744 1.02276 0.96656 0.96544 1.69799 1.57088 1.18598 1.11196 0.86216 0.78016 0.81697 0.79989 1.21174 1.21603 1.21181 1.22024 0.98231 0.81528 0.95017 0.93047 0.92351 0.94413 0.91991 0.92061 0.83232 0.86180 0.86149 0.85869 0.93654 0.97079 0.87302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 9.24 37.16 0.34 -1.95 16 2 C -0.12 -2.32 3.72 -88.47 -0.33 -2.65 16 3 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.11 -2.10 5.97 -24.89 -0.15 -2.25 16 5 C 0.20 4.12 2.66 -68.11 -0.18 3.94 16 6 H 0.05 1.04 7.97 -51.93 -0.41 0.63 16 7 C -0.11 -2.22 4.81 -104.55 -0.50 -2.72 16 8 C -0.05 -1.05 8.78 -39.59 -0.35 -1.40 16 9 C -0.14 -2.31 10.04 -39.58 -0.40 -2.71 16 10 C -0.11 -1.60 10.04 -39.60 -0.40 -2.00 16 11 C -0.17 -2.61 10.03 -39.52 -0.40 -3.01 16 12 C 0.09 1.57 7.25 -39.42 -0.29 1.28 16 13 F -0.15 -2.63 16.68 2.25 0.04 -2.60 16 14 N -0.59 -14.22 2.22 -163.88 -0.36 -14.59 16 15 C -0.22 -5.85 8.61 -15.06 -0.13 -5.98 16 16 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 17 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 18 N -0.92 -25.64 10.09 55.49 0.56 -25.08 16 19 Si 0.91 21.65 29.55 -169.99 -5.02 16.62 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.16 3.66 5.35 -2.53 -0.01 3.64 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.06 1.15 7.81 -51.93 -0.41 0.74 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.04 8.05 -51.93 -0.42 0.63 16 28 H 0.06 1.10 7.85 -51.93 -0.41 0.69 16 29 H 0.15 3.35 6.56 -52.49 -0.34 3.01 16 30 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 32 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.11 2.86 5.79 -51.93 -0.30 2.56 16 LS Contribution 288.74 15.07 4.35 4.35 Total: -1.00 -27.49 288.74 -8.12 -35.61 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -4.80 Total: 1.73 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -2.88 Total: -16.05 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.20 Total: -39.67 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.04 Total: -2.60 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.49 -8.12 -35.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174043094.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.375 kcal (2) G-P(sol) polarization free energy of solvation -27.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds