Wall clock time and date at job start Thu Apr 9 2020 12:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.88390 * 2 1 4 4 C 1.55155 * 111.03272 * 123.90447 * 2 1 3 5 5 C 1.54330 * 102.93959 * 153.59421 * 4 2 1 6 6 H 1.08996 * 109.88685 * 97.22234 * 5 4 2 7 7 C 1.50703 * 109.88256 * 218.39039 * 5 4 2 8 8 C 1.38214 * 120.01226 * 99.25729 * 7 5 4 9 9 C 1.38229 * 120.02609 * 179.97438 * 8 7 5 10 10 C 1.38273 * 120.04723 * 0.02562 * 9 8 7 11 11 C 1.38172 * 120.02789 * 359.97438 * 10 9 8 12 12 C 1.38434 * 120.00965 * 278.98660 * 7 5 4 13 13 F 1.35100 * 120.02725 * 359.97438 * 12 7 5 14 14 N 1.47025 * 107.26935 * 337.80560 * 5 4 2 15 15 C 1.36930 * 125.64890 * 179.20985 * 14 5 4 16 16 H 1.07996 * 120.00590 * 156.18111 * 15 14 5 17 17 C 1.38820 * 119.99911 * 336.18374 * 15 14 5 18 18 N 1.31613 * 119.99912 * 156.65750 * 17 15 14 19 19 Si 1.86795 * 119.99717 * 336.65604 * 17 15 14 20 20 H 1.48500 * 109.47382 * 87.90674 * 19 17 15 21 21 H 1.48503 * 109.46996 * 207.90494 * 19 17 15 22 22 H 1.48498 * 109.47505 * 327.90321 * 19 17 15 23 23 C 1.47422 * 108.70381 * 358.94176 * 14 5 4 24 24 H 1.08998 * 109.47270 * 182.42221 * 1 2 3 25 25 H 1.09002 * 109.47434 * 302.42764 * 1 2 3 26 26 H 1.09003 * 109.47182 * 62.42498 * 1 2 3 27 27 H 1.09004 * 110.72088 * 271.94979 * 4 2 1 28 28 H 1.08996 * 110.72509 * 35.05352 * 4 2 1 29 29 H 1.08001 * 119.99304 * 359.95865 * 8 7 5 30 30 H 1.08002 * 119.97660 * 180.02562 * 9 8 7 31 31 H 1.07995 * 119.98206 * 179.97438 * 10 9 8 32 32 H 1.07994 * 120.01419 * 179.97438 * 11 10 9 33 33 H 0.97008 * 119.99884 * 180.02562 * 18 17 15 34 34 H 1.08997 * 110.36887 * 142.96753 * 23 14 5 35 35 H 1.09003 * 110.36820 * 265.18186 * 23 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0869 -0.8078 1.2019 5 6 3.4683 -1.2732 0.6952 6 1 4.2432 -0.5985 1.0590 7 6 3.7424 -2.6768 1.1706 8 6 3.5351 -3.7472 0.3211 9 6 3.7869 -5.0347 0.7566 10 6 4.2458 -5.2533 2.0425 11 6 4.4537 -4.1848 2.8935 12 6 4.2071 -2.8940 2.4563 13 9 4.4158 -1.8480 3.2855 14 7 3.4275 -1.2419 -0.7741 15 6 4.4628 -1.5691 -1.6084 16 1 4.2610 -1.8882 -2.6202 17 6 5.7721 -1.4908 -1.1536 18 7 6.7137 -2.2053 -1.7324 19 14 6.1973 -0.3711 0.2799 20 1 6.0137 -1.1087 1.5556 21 1 7.6106 0.0693 0.1617 22 1 5.3058 0.8163 0.2620 23 6 2.0853 -0.8061 -1.2006 24 1 -0.3634 -1.0267 0.0434 25 1 -0.3634 0.5511 0.8674 26 1 -0.3634 0.4757 -0.9109 27 1 2.1929 -0.1699 2.0794 28 1 1.4464 -1.6616 1.4227 29 1 3.1761 -3.5777 -0.6833 30 1 3.6251 -5.8705 0.0920 31 1 4.4418 -6.2597 2.3818 32 1 4.8118 -4.3558 3.8979 33 1 7.6285 -2.1508 -1.4143 34 1 2.1554 -0.1713 -2.0839 35 1 1.4529 -1.6702 -1.4045 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174043108.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:19 Heat of formation + Delta-G solvation = 6.971681 kcal Electronic energy + Delta-G solvation = -19043.328024 eV Core-core repulsion = 16149.460025 eV Total energy + Delta-G solvation = -2893.867999 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.30815 -39.11142 -37.32289 -33.25183 -31.71038 -30.49523 -29.89244 -27.95485 -26.03776 -23.70585 -22.28459 -21.60900 -20.19136 -19.52192 -17.21438 -16.85916 -15.99147 -15.26669 -15.16948 -14.89376 -14.68398 -13.69429 -13.37770 -13.28684 -13.12682 -12.64826 -12.43958 -12.13677 -11.97971 -11.81354 -11.53800 -11.22841 -10.98854 -10.92866 -10.58218 -10.44373 -10.16793 -10.08758 -9.89461 -9.37654 -8.61206 -8.19624 -7.98280 -7.04733 -5.99257 -3.31170 1.78923 1.89975 3.40729 3.52211 3.52304 4.23552 4.55907 4.82388 4.92823 5.06613 5.19636 5.31782 5.38147 5.45195 5.54047 5.64119 5.78505 5.84405 5.90626 6.00259 6.04765 6.12574 6.22849 6.34078 6.40846 6.52194 6.59402 6.64428 6.72160 6.77351 6.86453 7.07395 7.23337 7.55502 7.76376 8.29192 8.82036 9.67712 10.17616 11.16403 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.013304 C = 0.010189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.775763 B = 2104.178853 C = 2747.442765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 H 0.075 0.925 4 C -0.115 4.115 5 C 0.181 3.819 6 H 0.050 0.950 7 C -0.106 4.106 8 C -0.038 4.038 9 C -0.140 4.140 10 C -0.106 4.106 11 C -0.171 4.171 12 C 0.091 3.909 13 F -0.147 7.147 14 N -0.600 5.600 15 C -0.252 4.252 16 H 0.092 0.908 17 C 0.041 3.959 18 N -0.897 5.897 19 Si 0.862 3.138 20 H -0.272 1.272 21 H -0.303 1.303 22 H -0.277 1.277 23 C 0.136 3.864 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.144 0.856 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.263 0.737 34 H 0.050 0.950 35 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.724 -1.746 6.791 11.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.132 4.132 3 H 0.093 0.907 4 C -0.153 4.153 5 C 0.075 3.925 6 H 0.067 0.933 7 C -0.109 4.109 8 C -0.056 4.056 9 C -0.159 4.159 10 C -0.124 4.124 11 C -0.190 4.190 12 C 0.071 3.929 13 F -0.126 7.126 14 N -0.324 5.324 15 C -0.378 4.378 16 H 0.109 0.891 17 C -0.159 4.159 18 N -0.539 5.539 19 Si 0.693 3.307 20 H -0.198 1.198 21 H -0.232 1.232 22 H -0.203 1.203 23 C 0.011 3.989 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.162 0.838 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -9.457 -1.764 6.702 11.724 hybrid contribution 0.774 0.831 1.057 1.551 sum -8.683 -0.932 7.759 11.682 Atomic orbital electron populations 1.21670 0.95023 1.01565 1.01102 1.22408 0.94861 0.99444 0.96462 0.90680 1.22625 0.95724 0.99455 0.97529 1.20121 0.95682 0.90475 0.86254 0.93313 1.20643 0.99773 0.98884 0.91579 1.21061 0.94777 0.90233 0.99500 1.21191 1.01466 0.97414 0.95785 1.20813 0.99740 0.97842 0.93988 1.20898 1.05782 0.91338 1.00977 1.17644 1.02535 0.83739 0.88962 1.91423 1.92886 1.56959 1.71298 1.44782 1.10065 1.78168 0.99420 1.18512 0.83288 1.39690 0.96331 0.89088 1.24987 0.95419 0.98156 0.97344 1.69838 1.01846 1.38801 1.43394 0.87214 0.76121 0.83367 0.84031 1.19848 1.23156 1.20292 1.21766 0.86764 0.95257 0.95083 0.92684 0.93132 0.92753 0.91642 0.91142 0.83802 0.86139 0.86123 0.85911 0.92706 0.93193 0.95226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.30 37.16 0.35 -1.37 16 2 C -0.11 -1.84 3.64 -88.47 -0.32 -2.16 16 3 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 4 C -0.12 -2.05 5.93 -24.89 -0.15 -2.20 16 5 C 0.18 4.02 1.85 -68.10 -0.13 3.89 16 6 H 0.05 1.22 3.19 -51.93 -0.17 1.06 16 7 C -0.11 -2.29 3.93 -104.56 -0.41 -2.70 16 8 C -0.04 -0.78 8.78 -39.59 -0.35 -1.13 16 9 C -0.14 -2.49 10.05 -39.57 -0.40 -2.89 16 10 C -0.11 -1.73 10.04 -39.59 -0.40 -2.13 16 11 C -0.17 -3.04 10.03 -39.51 -0.40 -3.43 16 12 C 0.09 1.88 6.58 -39.42 -0.26 1.62 16 13 F -0.15 -3.10 16.00 2.25 0.04 -3.06 16 14 N -0.60 -14.03 1.96 -163.88 -0.32 -14.35 16 15 C -0.25 -6.85 8.89 -15.06 -0.13 -6.99 16 16 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 17 C 0.04 1.20 5.27 -17.43 -0.09 1.10 16 18 N -0.90 -27.26 13.97 55.49 0.78 -26.49 16 19 Si 0.86 23.06 24.13 -169.99 -4.10 18.96 16 20 H -0.27 -7.22 5.32 56.52 0.30 -6.92 16 21 H -0.30 -8.27 7.11 56.52 0.40 -7.86 16 22 H -0.28 -7.34 6.99 56.52 0.39 -6.94 16 23 C 0.14 2.61 6.70 -2.53 -0.02 2.59 16 24 H 0.05 0.67 8.11 -51.93 -0.42 0.25 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.07 1.17 7.72 -51.93 -0.40 0.77 16 29 H 0.14 3.13 6.56 -52.49 -0.34 2.79 16 30 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 33 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.03 0.54 8.04 -51.93 -0.42 0.12 16 LS Contribution 281.32 15.07 4.24 4.24 Total: -1.00 -30.43 281.32 -6.87 -37.30 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -4.80 Total: -0.80 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -2.70 Total: -15.80 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.45 Total: -40.84 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.04 Total: -3.06 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.10 Total: 18.96 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.43 -6.87 -37.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174043108.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.276 kcal (2) G-P(sol) polarization free energy of solvation -30.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds