Wall clock time and date at job start Thu Apr 9 2020 12:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.88390 * 2 1 4 4 C 1.55155 * 111.03272 * 123.90447 * 2 1 3 5 5 C 1.54330 * 102.93959 * 153.59421 * 4 2 1 6 6 H 1.08996 * 109.88685 * 97.22234 * 5 4 2 7 7 C 1.50703 * 109.88256 * 218.39039 * 5 4 2 8 8 C 1.38214 * 120.01226 * 99.25729 * 7 5 4 9 9 C 1.38229 * 120.02609 * 179.97438 * 8 7 5 10 10 C 1.38273 * 120.04723 * 0.02562 * 9 8 7 11 11 C 1.38172 * 120.02789 * 359.97438 * 10 9 8 12 12 C 1.38434 * 120.00965 * 278.98660 * 7 5 4 13 13 F 1.35100 * 120.02725 * 359.97438 * 12 7 5 14 14 N 1.47025 * 107.26935 * 337.80560 * 5 4 2 15 15 C 1.36930 * 125.64890 * 179.20985 * 14 5 4 16 16 H 1.07996 * 120.00590 * 156.18111 * 15 14 5 17 17 C 1.38820 * 119.99911 * 336.18374 * 15 14 5 18 18 N 1.31613 * 119.99912 * 156.65750 * 17 15 14 19 19 Si 1.86795 * 119.99717 * 336.65604 * 17 15 14 20 20 H 1.48500 * 109.47382 * 87.90674 * 19 17 15 21 21 H 1.48503 * 109.46996 * 207.90494 * 19 17 15 22 22 H 1.48498 * 109.47505 * 327.90321 * 19 17 15 23 23 C 1.47422 * 108.70381 * 358.94176 * 14 5 4 24 24 H 1.08998 * 109.47270 * 182.42221 * 1 2 3 25 25 H 1.09002 * 109.47434 * 302.42764 * 1 2 3 26 26 H 1.09003 * 109.47182 * 62.42498 * 1 2 3 27 27 H 1.09004 * 110.72088 * 271.94979 * 4 2 1 28 28 H 1.08996 * 110.72509 * 35.05352 * 4 2 1 29 29 H 1.08001 * 119.99304 * 359.95865 * 8 7 5 30 30 H 1.08002 * 119.97660 * 180.02562 * 9 8 7 31 31 H 1.07995 * 119.98206 * 179.97438 * 10 9 8 32 32 H 1.07994 * 120.01419 * 179.97438 * 11 10 9 33 33 H 0.97008 * 119.99884 * 180.02562 * 18 17 15 34 34 H 1.08997 * 110.36887 * 142.96753 * 23 14 5 35 35 H 1.09003 * 110.36820 * 265.18186 * 23 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0869 -0.8078 1.2019 5 6 3.4683 -1.2732 0.6952 6 1 4.2432 -0.5985 1.0590 7 6 3.7424 -2.6768 1.1706 8 6 3.5351 -3.7472 0.3211 9 6 3.7869 -5.0347 0.7566 10 6 4.2458 -5.2533 2.0425 11 6 4.4537 -4.1848 2.8935 12 6 4.2071 -2.8940 2.4563 13 9 4.4158 -1.8480 3.2855 14 7 3.4275 -1.2419 -0.7741 15 6 4.4628 -1.5691 -1.6084 16 1 4.2610 -1.8882 -2.6202 17 6 5.7721 -1.4908 -1.1536 18 7 6.7137 -2.2053 -1.7324 19 14 6.1973 -0.3711 0.2799 20 1 6.0137 -1.1087 1.5556 21 1 7.6106 0.0693 0.1617 22 1 5.3058 0.8163 0.2620 23 6 2.0853 -0.8061 -1.2006 24 1 -0.3634 -1.0267 0.0434 25 1 -0.3634 0.5511 0.8674 26 1 -0.3634 0.4757 -0.9109 27 1 2.1929 -0.1699 2.0794 28 1 1.4464 -1.6616 1.4227 29 1 3.1761 -3.5777 -0.6833 30 1 3.6251 -5.8705 0.0920 31 1 4.4418 -6.2597 2.3818 32 1 4.8118 -4.3558 3.8979 33 1 7.6285 -2.1508 -1.4143 34 1 2.1554 -0.1713 -2.0839 35 1 1.4529 -1.6702 -1.4045 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174043108.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:19 Heat of formation + Delta-G solvation = -10.216392 kcal Electronic energy + Delta-G solvation = -19044.073355 eV Core-core repulsion = 16149.460025 eV Total energy + Delta-G solvation = -2894.613330 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.87030 -40.66756 -38.79865 -35.05421 -33.39577 -32.26356 -31.33940 -29.38950 -27.67604 -25.33069 -23.84641 -23.15898 -21.84198 -20.98627 -18.96578 -18.52857 -17.68834 -16.97656 -16.65326 -16.56731 -16.19639 -15.43725 -15.03101 -14.91515 -14.60910 -14.17762 -13.98819 -13.57060 -13.55232 -13.26577 -13.01400 -12.92915 -12.80994 -12.45324 -12.35811 -11.92482 -11.89263 -11.54034 -11.43846 -11.28897 -10.70724 -9.71421 -9.48210 -8.99568 -8.22286 -5.46698 0.31300 0.45159 1.25823 1.32028 1.36654 2.38001 2.76365 2.98902 3.32830 3.44912 3.66577 3.89731 3.92335 4.01570 4.13764 4.21574 4.34695 4.49549 4.62188 4.65363 4.70681 4.87781 4.89007 5.02508 5.09278 5.13404 5.20027 5.25516 5.30285 5.35060 5.51291 5.59154 5.65795 5.81542 6.09601 6.11829 6.77124 7.54731 8.13862 8.97469 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.013304 C = 0.010189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.775763 B = 2104.178853 C = 2747.442765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 H 0.069 0.931 4 C -0.108 4.108 5 C 0.174 3.826 6 H 0.020 0.980 7 C -0.127 4.127 8 C -0.061 4.061 9 C -0.139 4.139 10 C -0.094 4.094 11 C -0.166 4.166 12 C 0.062 3.938 13 F -0.155 7.155 14 N -0.614 5.614 15 C -0.223 4.223 16 H 0.067 0.933 17 C -0.003 4.003 18 N -0.939 5.939 19 Si 0.910 3.090 20 H -0.272 1.272 21 H -0.315 1.315 22 H -0.279 1.279 23 C 0.130 3.870 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.123 0.877 30 H 0.147 0.853 31 H 0.166 0.834 32 H 0.153 0.847 33 H 0.259 0.741 34 H 0.047 0.953 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.508 -2.639 8.389 14.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.121 4.121 3 H 0.088 0.912 4 C -0.146 4.146 5 C 0.067 3.933 6 H 0.037 0.963 7 C -0.130 4.130 8 C -0.080 4.080 9 C -0.157 4.157 10 C -0.112 4.112 11 C -0.185 4.185 12 C 0.043 3.957 13 F -0.134 7.134 14 N -0.338 5.338 15 C -0.351 4.351 16 H 0.085 0.915 17 C -0.200 4.200 18 N -0.584 5.584 19 Si 0.742 3.258 20 H -0.199 1.199 21 H -0.244 1.244 22 H -0.205 1.205 23 C 0.006 3.994 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.141 0.859 30 H 0.165 0.835 31 H 0.184 0.816 32 H 0.171 0.829 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.294 -2.636 8.320 14.273 hybrid contribution 1.234 1.025 0.532 1.690 sum -10.059 -1.611 8.852 13.496 Atomic orbital electron populations 1.21615 0.91574 1.02549 1.02719 1.22368 0.97532 0.98216 0.94017 0.91229 1.22628 0.93501 1.00247 0.98240 1.20182 0.97231 0.90743 0.85113 0.96308 1.20613 1.01293 0.98593 0.92517 1.20999 0.96590 0.91691 0.98695 1.21547 1.00215 0.96886 0.97027 1.21308 0.97463 0.99594 0.92822 1.21332 1.04294 0.90285 1.02559 1.17958 1.04025 0.84816 0.88904 1.91392 1.93111 1.57569 1.71354 1.44881 1.10541 1.78297 1.00124 1.18415 0.84203 1.36827 0.95676 0.91498 1.25325 0.95712 0.99732 0.99212 1.69925 1.01960 1.41085 1.45466 0.86428 0.74825 0.82132 0.82406 1.19858 1.24424 1.20516 1.21972 0.84947 0.96135 0.96347 0.92040 0.91267 0.91417 0.90568 0.89777 0.85933 0.83541 0.81615 0.82940 0.93175 0.93492 0.93903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.30 71.98 0.67 -2.11 16 2 C -0.10 -3.14 3.64 -9.40 -0.03 -3.17 16 3 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 4 C -0.11 -3.68 5.93 31.78 0.19 -3.49 16 5 C 0.17 7.65 1.85 44.60 0.08 7.73 16 6 H 0.02 0.98 3.19 -2.39 -0.01 0.97 16 7 C -0.13 -5.45 3.93 -19.82 -0.08 -5.53 16 8 C -0.06 -2.51 8.78 22.26 0.20 -2.31 16 9 C -0.14 -4.60 10.05 22.28 0.22 -4.37 16 10 C -0.09 -2.72 10.04 22.26 0.22 -2.50 16 11 C -0.17 -5.39 10.03 22.31 0.22 -5.17 16 12 C 0.06 2.51 6.58 22.38 0.15 2.65 16 13 F -0.16 -6.43 16.00 44.97 0.72 -5.71 16 14 N -0.61 -28.87 1.96 -672.38 -1.32 -30.19 16 15 C -0.22 -12.43 8.89 84.04 0.75 -11.68 16 16 H 0.07 4.00 8.06 -2.91 -0.02 3.97 16 17 C 0.00 -0.19 5.27 84.86 0.45 0.25 16 18 N -0.94 -58.75 13.97 21.65 0.30 -58.44 16 19 Si 0.91 49.17 24.13 68.60 1.66 50.82 16 20 H -0.27 -14.52 5.32 99.48 0.53 -13.99 16 21 H -0.31 -17.33 7.11 99.48 0.71 -16.63 16 22 H -0.28 -14.83 6.99 99.48 0.70 -14.14 16 23 C 0.13 4.86 6.70 86.85 0.58 5.44 16 24 H 0.06 1.28 8.11 -2.39 -0.02 1.27 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 28 H 0.08 2.61 7.72 -2.39 -0.02 2.59 16 29 H 0.12 5.42 6.56 -2.91 -0.02 5.40 16 30 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 31 H 0.17 3.31 8.06 -2.91 -0.02 3.29 16 32 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 33 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.04 1.50 8.04 -2.39 -0.02 1.48 16 Total: -1.00 -67.64 281.32 5.86 -61.78 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 0.89 Total: 6.01 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 3.62 Total: -24.27 kcal Atomic # 7 Polarization: -87.62 SS G_CDS: -1.02 Total: -88.64 kcal Atomic # 9 Polarization: -6.43 SS G_CDS: 0.72 Total: -5.71 kcal Atomic # 14 Polarization: 49.17 SS G_CDS: 1.66 Total: 50.82 kcal Total: -67.64 5.86 -61.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174043108.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.566 kcal (2) G-P(sol) polarization free energy of solvation -67.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds