Wall clock time and date at job start Thu Apr 9 2020 12:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00161 * 2 1 4 4 C 1.50700 * 109.47068 * 66.05192 * 3 2 1 5 5 N 1.30524 * 126.34303 * 275.02578 * 4 3 2 6 6 N 1.28600 * 109.66877 * 179.97438 * 5 4 3 7 7 C 1.30512 * 109.67728 * 0.02562 * 6 5 4 8 8 N 1.35492 * 107.30534 * 359.77020 * 7 6 5 9 9 H 0.97005 * 126.98394 * 180.22670 * 8 7 6 10 10 C 1.46906 * 110.99771 * 236.04801 * 2 1 3 11 11 C 1.52993 * 109.47378 * 293.95638 * 10 2 1 12 12 H 1.09003 * 109.47360 * 54.99102 * 11 10 2 13 13 C 1.47206 * 109.46755 * 294.99867 * 11 10 2 14 14 N 3.66495 * 112.02641 * 160.59435 * 2 1 3 15 15 C 1.52993 * 109.47489 * 175.00066 * 11 10 2 16 16 C 1.50696 * 109.47454 * 185.00085 * 15 11 10 17 17 H 1.08002 * 119.99737 * 359.97438 * 16 15 11 18 18 C 1.37872 * 120.00193 * 180.02562 * 16 15 11 19 19 N 1.31522 * 119.99991 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00218 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47381 * 90.00084 * 20 18 16 22 22 H 1.48503 * 109.47427 * 210.00298 * 20 18 16 23 23 H 1.48501 * 109.46865 * 329.99791 * 20 18 16 24 24 H 1.08997 * 109.47293 * 183.95420 * 1 2 3 25 25 H 1.09000 * 109.46769 * 303.95193 * 1 2 3 26 26 H 1.08999 * 109.47106 * 63.94333 * 1 2 3 27 27 H 1.09004 * 109.47244 * 186.04995 * 3 2 1 28 28 H 1.08994 * 109.47665 * 306.05094 * 3 2 1 29 29 H 1.07997 * 126.34971 * 180.02562 * 7 6 5 30 30 H 1.09004 * 109.47040 * 53.95427 * 10 2 1 31 31 H 1.09000 * 109.47033 * 173.95379 * 10 2 1 32 32 H 1.09005 * 109.46976 * 305.00040 * 15 11 10 33 33 H 1.09005 * 109.47398 * 64.99651 * 15 11 10 34 34 H 0.97000 * 119.99670 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6371 2.0470 1.2985 5 7 0.5168 2.6603 1.5679 6 7 0.5522 3.1186 2.7690 7 6 1.6968 2.8191 3.3200 8 7 2.4160 2.1264 2.4043 9 1 3.3082 1.7626 2.5168 10 6 1.9954 -0.7660 -1.1377 11 6 1.6314 -2.2425 -0.9706 12 1 0.5531 -2.3388 -0.8433 13 6 2.3155 -2.7854 0.2144 14 7 2.8434 -3.2044 1.1288 15 6 2.0698 -3.0198 -2.2133 16 6 1.6029 -4.4483 -2.1031 17 1 1.0491 -4.7698 -1.2333 18 6 1.8834 -5.3451 -3.1120 19 7 1.4764 -6.5920 -3.0155 20 14 2.8418 -4.7893 -4.6160 21 1 4.2944 -4.9840 -4.3772 22 1 2.4221 -5.5899 -5.7942 23 1 2.5705 -3.3519 -4.8723 24 1 -0.3634 -1.0252 0.0709 25 1 -0.3633 0.5740 0.8525 26 1 -0.3633 0.4514 -0.9232 27 1 3.0798 1.3444 -0.1083 28 1 1.5611 1.9274 -0.8308 29 1 2.0107 3.0725 4.3218 30 1 1.5610 -0.3872 -2.0629 31 1 3.0797 -0.6611 -1.1757 32 1 1.6328 -2.5622 -3.1009 33 1 3.1568 -2.9978 -2.2909 34 1 1.6741 -7.2230 -3.7252 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175585077.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:21 Heat of formation + Delta-G solvation = 106.074865 kcal Electronic energy + Delta-G solvation = -17474.782331 eV Core-core repulsion = 14637.424481 eV Total energy + Delta-G solvation = -2837.357850 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.128 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.26837 -38.33329 -35.88374 -33.97186 -33.68739 -32.18626 -30.93838 -27.77589 -27.64510 -24.93437 -22.93640 -21.97330 -21.53290 -21.14016 -18.44303 -17.00567 -16.85165 -16.36397 -15.70114 -15.28590 -14.82596 -14.78742 -14.24163 -13.46735 -13.19379 -13.00169 -12.53011 -12.45816 -12.06503 -11.84848 -11.75721 -11.52235 -11.41504 -11.31054 -10.96689 -10.82096 -10.59866 -10.28544 -10.04250 -9.86075 -9.46777 -9.36570 -8.65215 -8.46869 -6.13801 -4.14967 1.58826 2.58445 2.68254 3.23713 3.30621 3.32150 3.60934 3.69870 3.85789 4.19028 4.34775 4.55072 4.66072 4.71685 5.12013 5.17278 5.20800 5.24647 5.40667 5.47475 5.62358 5.70077 5.78973 5.87088 6.05481 6.13915 6.29042 6.79460 6.85053 6.89039 6.93268 7.05982 7.59452 8.36702 8.47000 8.53434 8.89649 9.45617 10.99293 Molecular weight = 249.13amu Principal moments of inertia in cm(-1) A = 0.043032 B = 0.004437 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.516199 B = 6309.289660 C = 6495.310360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.543 5.543 3 C 0.136 3.864 4 C 0.195 3.805 5 N -0.290 5.290 6 N -0.299 5.299 7 C 0.151 3.849 8 N -0.573 5.573 9 H 0.431 0.569 10 C 0.060 3.940 11 C 0.020 3.980 12 H 0.108 0.892 13 C 0.253 3.747 14 N -0.473 5.473 15 C -0.005 4.005 16 C -0.529 4.529 17 H 0.074 0.926 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.878 3.122 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.263 1.263 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.036 0.964 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.220 0.780 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.038 0.962 33 H 0.021 0.979 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.214 18.915 5.290 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.268 5.268 3 C 0.006 3.994 4 C -0.074 4.074 5 N -0.132 5.132 6 N -0.139 5.139 7 C -0.139 4.139 8 N -0.186 5.186 9 H 0.270 0.730 10 C -0.068 4.068 11 C -0.002 4.002 12 H 0.126 0.874 13 C -0.064 4.064 14 N -0.149 5.149 15 C -0.044 4.044 16 C -0.567 4.567 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.534 5.534 20 Si 0.705 3.295 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.187 1.187 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.054 0.946 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.236 0.764 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.039 0.961 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.607 18.508 6.828 19.899 hybrid contribution 1.815 -0.169 -1.460 2.336 sum 4.423 18.339 5.368 19.614 Atomic orbital electron populations 1.22563 0.85974 1.03049 1.01604 1.61991 1.09514 1.10913 1.44416 1.20390 1.00925 0.89017 0.89052 1.24756 0.89512 1.01409 0.91770 1.74264 1.17706 1.12856 1.08363 1.74245 1.17317 1.20213 1.02157 1.26471 0.90653 0.98582 0.98178 1.44095 1.18852 1.43292 1.12324 0.72966 1.22312 1.00744 0.92442 0.91295 1.19012 0.99940 0.91790 0.89468 0.87405 1.28725 0.92849 0.91630 0.93172 1.80995 1.10655 1.10375 1.12913 1.19646 0.97052 0.96424 0.91233 1.21011 1.36839 0.92052 1.06787 0.90796 1.24992 0.95211 0.94691 0.98184 1.69909 1.46096 1.03549 1.33856 0.86814 0.80594 0.79307 0.82788 1.20266 1.21235 1.18719 0.90506 0.90715 0.94573 0.88804 0.90671 0.76374 0.92134 0.90045 0.94407 0.96086 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.15 60.06 0.55 0.74 16 2 N -0.54 -6.49 4.45 -244.38 -1.09 -7.57 16 3 C 0.14 1.30 5.59 -4.98 -0.03 1.27 16 4 C 0.20 2.15 7.05 -154.98 -1.09 1.05 16 5 N -0.29 -4.00 11.10 32.80 0.36 -3.63 16 6 N -0.30 -3.96 12.21 29.68 0.36 -3.59 16 7 C 0.15 1.34 13.19 -89.95 -1.19 0.15 16 8 N -0.57 -4.78 6.20 -11.36 -0.07 -4.85 16 9 H 0.43 2.25 8.96 -40.82 -0.37 1.89 16 10 C 0.06 0.75 4.32 -3.82 -0.02 0.73 16 11 C 0.02 0.33 2.13 -93.41 -0.20 0.13 16 12 H 0.11 1.78 6.34 -51.93 -0.33 1.45 16 13 C 0.25 5.02 13.67 -20.76 -0.28 4.74 16 14 N -0.47 -10.34 18.54 42.15 0.78 -9.56 16 15 C 0.00 -0.09 3.49 -27.89 -0.10 -0.19 16 16 C -0.53 -13.95 9.15 -34.44 -0.32 -14.27 16 17 H 0.07 2.16 7.84 -52.49 -0.41 1.75 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 19 N -0.90 -26.73 13.96 55.43 0.77 -25.96 16 20 Si 0.88 20.16 27.47 -169.99 -4.67 15.49 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.26 -5.52 6.54 56.52 0.37 -5.15 16 24 H 0.08 0.98 6.37 -51.93 -0.33 0.65 16 25 H 0.07 1.00 6.34 -51.93 -0.33 0.68 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.09 0.68 7.93 -51.93 -0.41 0.27 16 28 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 29 H 0.22 0.91 8.06 -52.49 -0.42 0.49 16 30 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 31 H 0.08 0.93 7.93 -51.93 -0.41 0.51 16 32 H 0.04 0.73 7.20 -51.93 -0.37 0.35 16 33 H 0.02 0.43 7.57 -51.93 -0.39 0.03 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 295.11 15.07 4.45 4.45 Total: -1.00 -34.66 295.11 -6.08 -40.73 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -4.21 Total: -1.74 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -2.77 Total: -3.76 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 1.12 Total: -55.17 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.67 Total: 15.49 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -34.66 -6.08 -40.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175585077.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.808 kcal (2) G-P(sol) polarization free energy of solvation -34.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds