Wall clock time and date at job start Thu Apr 9 2020 12:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00161 * 2 1 4 4 C 1.50700 * 109.47068 * 66.05192 * 3 2 1 5 5 N 1.30524 * 126.34303 * 275.02578 * 4 3 2 6 6 N 1.28600 * 109.66877 * 179.97438 * 5 4 3 7 7 C 1.30512 * 109.67728 * 0.02562 * 6 5 4 8 8 N 1.35492 * 107.30534 * 359.77020 * 7 6 5 9 9 H 0.97005 * 126.98394 * 180.22670 * 8 7 6 10 10 C 1.46906 * 110.99771 * 236.04801 * 2 1 3 11 11 C 1.52993 * 109.47378 * 293.95638 * 10 2 1 12 12 H 1.09003 * 109.47360 * 54.99102 * 11 10 2 13 13 C 1.47206 * 109.46755 * 294.99867 * 11 10 2 14 14 N 3.66495 * 112.02641 * 160.59435 * 2 1 3 15 15 C 1.52993 * 109.47489 * 175.00066 * 11 10 2 16 16 C 1.50696 * 109.47454 * 185.00085 * 15 11 10 17 17 H 1.08002 * 119.99737 * 359.97438 * 16 15 11 18 18 C 1.37872 * 120.00193 * 180.02562 * 16 15 11 19 19 N 1.31522 * 119.99991 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00218 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47381 * 90.00084 * 20 18 16 22 22 H 1.48503 * 109.47427 * 210.00298 * 20 18 16 23 23 H 1.48501 * 109.46865 * 329.99791 * 20 18 16 24 24 H 1.08997 * 109.47293 * 183.95420 * 1 2 3 25 25 H 1.09000 * 109.46769 * 303.95193 * 1 2 3 26 26 H 1.08999 * 109.47106 * 63.94333 * 1 2 3 27 27 H 1.09004 * 109.47244 * 186.04995 * 3 2 1 28 28 H 1.08994 * 109.47665 * 306.05094 * 3 2 1 29 29 H 1.07997 * 126.34971 * 180.02562 * 7 6 5 30 30 H 1.09004 * 109.47040 * 53.95427 * 10 2 1 31 31 H 1.09000 * 109.47033 * 173.95379 * 10 2 1 32 32 H 1.09005 * 109.46976 * 305.00040 * 15 11 10 33 33 H 1.09005 * 109.47398 * 64.99651 * 15 11 10 34 34 H 0.97000 * 119.99670 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6371 2.0470 1.2985 5 7 0.5168 2.6603 1.5679 6 7 0.5522 3.1186 2.7690 7 6 1.6968 2.8191 3.3200 8 7 2.4160 2.1264 2.4043 9 1 3.3082 1.7626 2.5168 10 6 1.9954 -0.7660 -1.1377 11 6 1.6314 -2.2425 -0.9706 12 1 0.5531 -2.3388 -0.8433 13 6 2.3155 -2.7854 0.2144 14 7 2.8434 -3.2044 1.1288 15 6 2.0698 -3.0198 -2.2133 16 6 1.6029 -4.4483 -2.1031 17 1 1.0491 -4.7698 -1.2333 18 6 1.8834 -5.3451 -3.1120 19 7 1.4764 -6.5920 -3.0155 20 14 2.8418 -4.7893 -4.6160 21 1 4.2944 -4.9840 -4.3772 22 1 2.4221 -5.5899 -5.7942 23 1 2.5705 -3.3519 -4.8723 24 1 -0.3634 -1.0252 0.0709 25 1 -0.3633 0.5740 0.8525 26 1 -0.3633 0.4514 -0.9232 27 1 3.0798 1.3444 -0.1083 28 1 1.5611 1.9274 -0.8308 29 1 2.0107 3.0725 4.3218 30 1 1.5610 -0.3872 -2.0629 31 1 3.0797 -0.6611 -1.1757 32 1 1.6328 -2.5622 -3.1009 33 1 3.1568 -2.9978 -2.2909 34 1 1.6741 -7.2230 -3.7252 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175585077.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:21 Heat of formation + Delta-G solvation = 81.223914 kcal Electronic energy + Delta-G solvation = -17475.859949 eV Core-core repulsion = 14637.424481 eV Total energy + Delta-G solvation = -2838.435468 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.128 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.02590 -39.42428 -37.27442 -35.46780 -34.67769 -33.82236 -31.97169 -29.23271 -28.51587 -26.18554 -23.74794 -23.30661 -22.86173 -21.96779 -19.16295 -18.88709 -18.24540 -17.31412 -16.54599 -16.42703 -15.92226 -15.70000 -15.63745 -14.90419 -14.65602 -14.28912 -13.93432 -13.76865 -13.38578 -13.14111 -12.96472 -12.80778 -12.64313 -12.45157 -12.36663 -11.76889 -11.74459 -11.67346 -11.56942 -11.35713 -11.24755 -10.71359 -10.29876 -9.33109 -8.22483 -6.28570 0.87643 1.46042 1.47542 1.58509 1.85436 1.99086 2.06619 2.13316 2.43602 2.98940 3.14506 3.32775 3.47393 3.90417 4.07128 4.14489 4.32620 4.43243 4.51676 4.61530 4.63274 4.74076 4.80424 4.87985 4.94218 5.10955 5.22980 5.29095 5.47454 5.65876 5.97738 5.98942 6.28127 6.30932 6.79420 6.91530 7.36098 7.75553 8.94671 Molecular weight = 249.13amu Principal moments of inertia in cm(-1) A = 0.043032 B = 0.004437 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.516199 B = 6309.289660 C = 6495.310360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.556 5.556 3 C 0.139 3.861 4 C 0.190 3.810 5 N -0.330 5.330 6 N -0.352 5.352 7 C 0.168 3.832 8 N -0.565 5.565 9 H 0.446 0.554 10 C 0.071 3.929 11 C 0.023 3.977 12 H 0.108 0.892 13 C 0.264 3.736 14 N -0.516 5.516 15 C -0.002 4.002 16 C -0.532 4.532 17 H 0.025 0.975 18 C 0.001 3.999 19 N -0.957 5.957 20 Si 0.950 3.050 21 H -0.275 1.275 22 H -0.293 1.293 23 H -0.218 1.218 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.123 0.877 28 H 0.086 0.914 29 H 0.262 0.738 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.031 0.969 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.975 21.529 4.045 22.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.282 5.282 3 C 0.009 3.991 4 C -0.082 4.082 5 N -0.171 5.171 6 N -0.192 5.192 7 C -0.122 4.122 8 N -0.178 5.178 9 H 0.288 0.712 10 C -0.058 4.058 11 C 0.001 3.999 12 H 0.126 0.874 13 C -0.052 4.052 14 N -0.194 5.194 15 C -0.041 4.041 16 C -0.570 4.570 17 H 0.043 0.957 18 C -0.195 4.195 19 N -0.598 5.598 20 Si 0.772 3.228 21 H -0.201 1.201 22 H -0.219 1.219 23 H -0.140 1.140 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.141 0.859 28 H 0.104 0.896 29 H 0.278 0.722 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.084 0.916 33 H 0.050 0.950 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.373 21.161 5.600 22.323 hybrid contribution 1.224 -1.024 -0.924 1.844 sum 5.598 20.137 4.676 21.418 Atomic orbital electron populations 1.22448 0.86627 1.01966 1.01617 1.61861 1.09080 1.12639 1.44575 1.20526 1.02537 0.87362 0.88647 1.25003 0.89270 1.01085 0.92795 1.74160 1.19464 1.14341 1.09139 1.74152 1.19826 1.22476 1.02697 1.27264 0.89301 0.96408 0.99234 1.44095 1.19358 1.42854 1.11527 0.71156 1.22215 1.02146 0.88886 0.92508 1.19112 0.99573 0.94562 0.86638 0.87410 1.29419 0.91988 0.90544 0.93273 1.80992 1.12264 1.11784 1.14357 1.19597 0.97600 0.93055 0.93876 1.21421 1.35406 0.95420 1.04748 0.95706 1.26084 0.96630 0.94524 1.02305 1.70106 1.48788 1.05477 1.35400 0.85676 0.78412 0.81135 0.77537 1.20081 1.21934 1.14042 0.91824 0.92309 0.93211 0.85945 0.89603 0.72222 0.89379 0.88082 0.91554 0.95016 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.15 127.69 1.17 1.66 16 2 N -0.56 -11.68 4.45 -927.07 -4.13 -15.81 16 3 C 0.14 2.17 5.59 85.56 0.48 2.65 16 4 C 0.19 3.79 7.05 137.98 0.97 4.76 16 5 N -0.33 -8.84 11.10 -50.15 -0.56 -9.40 16 6 N -0.35 -9.06 12.21 -60.00 -0.73 -9.79 16 7 C 0.17 2.63 13.19 180.12 2.37 5.00 16 8 N -0.56 -8.03 6.20 -189.87 -1.18 -9.20 16 9 H 0.45 3.31 8.96 -92.70 -0.83 2.48 16 10 C 0.07 1.46 4.32 86.30 0.37 1.83 16 11 C 0.02 0.73 2.13 -12.60 -0.03 0.70 16 12 H 0.11 3.43 6.34 -2.39 -0.02 3.42 16 13 C 0.26 10.24 13.67 89.44 1.22 11.46 16 14 N -0.52 -22.55 18.54 20.01 0.37 -22.18 16 15 C 0.00 -0.09 3.49 29.84 0.10 0.02 16 16 C -0.53 -28.14 9.15 25.60 0.23 -27.91 16 17 H 0.02 1.50 7.84 -2.91 -0.02 1.48 16 18 C 0.00 0.05 5.47 84.65 0.46 0.51 16 19 N -0.96 -58.90 13.96 21.45 0.30 -58.60 16 20 Si 0.95 40.17 27.47 68.60 1.88 42.06 16 21 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 22 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.22 -7.64 6.54 99.48 0.65 -6.99 16 24 H 0.06 1.59 6.37 -2.39 -0.02 1.58 16 25 H 0.06 1.56 6.34 -2.39 -0.02 1.54 16 26 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.12 1.20 7.93 -2.38 -0.02 1.18 16 28 H 0.09 1.19 8.12 -2.39 -0.02 1.17 16 29 H 0.26 1.31 8.06 -2.91 -0.02 1.29 16 30 H 0.09 1.41 8.12 -2.38 -0.02 1.39 16 31 H 0.10 1.76 7.93 -2.39 -0.02 1.74 16 32 H 0.07 2.21 7.20 -2.38 -0.02 2.19 16 33 H 0.03 1.16 7.57 -2.38 -0.02 1.14 16 34 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -79.47 295.11 3.56 -75.91 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 0.24 Total: 6.33 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 7.36 Total: 0.69 kcal Atomic # 7 Polarization: -119.06 SS G_CDS: -5.92 Total: -124.98 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 1.88 Total: 42.06 kcal Total: -79.47 3.56 -75.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175585077.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.130 kcal (2) G-P(sol) polarization free energy of solvation -79.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds