Wall clock time and date at job start Thu Apr 9 2020 12:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99919 * 2 1 4 4 C 1.50694 * 109.47739 * 66.04636 * 3 2 1 5 5 N 1.30527 * 126.34553 * 275.02751 * 4 3 2 6 6 N 1.28591 * 109.67114 * 179.97438 * 5 4 3 7 7 C 1.30515 * 109.67805 * 0.02562 * 6 5 4 8 8 N 1.35485 * 126.35060 * 94.71014 * 4 3 2 9 9 H 0.97006 * 126.97671 * 0.04407 * 8 4 3 10 10 C 1.46898 * 110.99809 * 236.04154 * 2 1 3 11 11 C 1.53003 * 109.46814 * 199.66498 * 10 2 1 12 12 H 1.08992 * 109.47446 * 304.67021 * 11 10 2 13 13 C 1.47201 * 109.47164 * 64.67329 * 11 10 2 14 14 N 3.66014 * 124.18065 * 157.05536 * 2 1 3 15 15 C 1.53008 * 109.46922 * 184.67054 * 11 10 2 16 16 C 1.50697 * 109.46861 * 175.00580 * 15 11 10 17 17 H 1.07996 * 120.00548 * 359.97438 * 16 15 11 18 18 C 1.37883 * 119.99496 * 179.72451 * 16 15 11 19 19 N 1.31518 * 119.99826 * 180.26953 * 18 16 15 20 20 Si 1.86792 * 120.00320 * 0.27125 * 18 16 15 21 21 H 1.48507 * 109.46926 * 89.99928 * 20 18 16 22 22 H 1.48493 * 109.47429 * 209.99828 * 20 18 16 23 23 H 1.48502 * 109.47334 * 330.00096 * 20 18 16 24 24 H 1.09002 * 109.46703 * 188.20583 * 1 2 3 25 25 H 1.08997 * 109.46996 * 308.19863 * 1 2 3 26 26 H 1.08995 * 109.47325 * 68.20152 * 1 2 3 27 27 H 1.09000 * 109.47033 * 186.04719 * 3 2 1 28 28 H 1.09011 * 109.46861 * 306.04159 * 3 2 1 29 29 H 1.07994 * 126.35092 * 179.97438 * 7 6 5 30 30 H 1.09001 * 109.46767 * 79.67202 * 10 2 1 31 31 H 1.08992 * 109.47506 * 319.67073 * 10 2 1 32 32 H 1.09000 * 109.47018 * 54.99981 * 15 11 10 33 33 H 1.09000 * 109.46672 * 295.00296 * 15 11 10 34 34 H 0.96996 * 120.00197 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2983 5 7 0.5167 2.6605 1.5677 6 7 0.5521 3.1190 2.7686 7 6 1.6967 2.8196 3.3198 8 7 2.4155 2.1257 2.4045 9 1 3.3075 1.7616 2.5172 10 6 1.9954 -0.7661 -1.1375 11 6 3.4464 -1.1627 -0.8575 12 1 4.0303 -0.2702 -0.6331 13 6 3.4910 -2.0803 0.2927 14 7 3.5253 -2.7884 1.1804 15 6 4.0314 -1.8588 -2.0881 16 6 5.4940 -2.1396 -1.8584 17 1 5.9599 -1.8503 -0.9281 18 6 6.2363 -2.7707 -2.8341 19 7 7.5115 -3.0206 -2.6316 20 14 5.4307 -3.2707 -4.4435 21 1 5.5485 -2.1599 -5.4221 22 1 6.1071 -4.4782 -4.9816 23 1 3.9959 -3.5714 -4.2065 24 1 -0.3633 -1.0172 0.1467 25 1 -0.3633 0.6355 0.8076 26 1 -0.3634 0.3816 -0.9541 27 1 3.0797 1.3444 -0.1083 28 1 1.5611 1.9273 -0.8311 29 1 2.0108 3.0738 4.3213 30 1 1.9536 -0.1538 -2.0384 31 1 1.3943 -1.6640 -1.2803 32 1 3.9176 -1.2133 -2.9590 33 1 3.5038 -2.7971 -2.2598 34 1 8.0336 -3.4649 -3.3178 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175585100.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:23 Heat of formation + Delta-G solvation = 104.751624 kcal Electronic energy + Delta-G solvation = -17599.481416 eV Core-core repulsion = 14762.066186 eV Total energy + Delta-G solvation = -2837.415230 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.128 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.21153 -38.32443 -35.89410 -33.88459 -33.71200 -32.12137 -31.08412 -27.91455 -27.55085 -24.69200 -22.93674 -22.09462 -21.54124 -21.10666 -18.42853 -17.04014 -16.96249 -16.14855 -15.65320 -15.43209 -14.77281 -14.59381 -14.25887 -13.45324 -13.25912 -13.04246 -12.51834 -12.27088 -12.26482 -11.88521 -11.84155 -11.56988 -11.42671 -11.28342 -10.91179 -10.83285 -10.55839 -10.46219 -10.01816 -9.84328 -9.43748 -9.38990 -8.68364 -8.46891 -6.17550 -4.18828 1.65524 2.65702 2.73441 3.20878 3.30692 3.30719 3.57484 3.67528 3.87617 4.22978 4.32336 4.63473 4.68157 4.75114 5.13576 5.17568 5.22094 5.28790 5.36394 5.48172 5.61955 5.66707 5.75731 5.89788 6.05749 6.07397 6.16810 6.81484 6.83994 6.86949 6.95590 7.04427 7.56176 8.32443 8.44131 8.58304 8.84949 9.42251 10.95440 Molecular weight = 249.13amu Principal moments of inertia in cm(-1) A = 0.033525 B = 0.004892 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.993107 B = 5721.735250 C = 5936.284706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.543 5.543 3 C 0.130 3.870 4 C 0.197 3.803 5 N -0.293 5.293 6 N -0.301 5.301 7 C 0.151 3.849 8 N -0.572 5.572 9 H 0.433 0.567 10 C 0.059 3.941 11 C 0.021 3.979 12 H 0.103 0.897 13 C 0.252 3.748 14 N -0.471 5.471 15 C -0.006 4.006 16 C -0.530 4.530 17 H 0.073 0.927 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.877 3.123 21 H -0.274 1.274 22 H -0.287 1.287 23 H -0.264 1.264 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.032 0.968 27 H 0.101 0.899 28 H 0.077 0.923 29 H 0.220 0.780 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.034 0.966 33 H 0.026 0.974 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.432 10.751 4.427 15.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.268 5.268 3 C 0.001 3.999 4 C -0.073 4.073 5 N -0.135 5.135 6 N -0.141 5.141 7 C -0.139 4.139 8 N -0.184 5.184 9 H 0.273 0.727 10 C -0.069 4.069 11 C -0.001 4.001 12 H 0.120 0.880 13 C -0.065 4.065 14 N -0.147 5.147 15 C -0.045 4.045 16 C -0.567 4.567 17 H 0.091 0.909 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.704 3.296 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.188 1.188 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.051 0.949 27 H 0.120 0.880 28 H 0.095 0.905 29 H 0.236 0.764 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.052 0.948 33 H 0.044 0.956 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.612 9.999 5.939 16.435 hybrid contribution 1.387 -0.413 -1.519 2.098 sum -10.225 9.586 4.421 14.696 Atomic orbital electron populations 1.22479 0.86231 1.02571 1.01407 1.61951 1.08944 1.11372 1.44518 1.20524 1.01771 0.88660 0.88994 1.24740 0.89472 1.01333 0.91763 1.74230 1.17872 1.13030 1.08413 1.74222 1.17437 1.20279 1.02179 1.26465 0.90639 0.98532 0.98223 1.44115 1.18962 1.43042 1.12260 0.72744 1.22333 0.95261 0.98275 0.91077 1.18986 0.95293 0.95460 0.90330 0.87972 1.28711 0.91467 0.93184 0.93182 1.81017 1.10093 1.10883 1.12721 1.19656 0.97516 0.96080 0.91261 1.20994 0.91924 1.39763 1.04048 0.90858 1.24989 0.94652 0.94914 0.98489 1.69899 1.06982 1.41828 1.34707 0.86822 0.80223 0.78573 0.83978 1.19998 1.21285 1.18813 0.91398 0.90437 0.94905 0.88037 0.90543 0.76377 0.91937 0.89629 0.94811 0.95555 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.37 60.07 0.56 0.80 16 2 N -0.54 -6.50 4.37 -244.37 -1.07 -7.57 16 3 C 0.13 1.36 5.42 -4.98 -0.03 1.33 16 4 C 0.20 2.29 7.06 -154.99 -1.09 1.20 16 5 N -0.29 -4.12 11.00 32.79 0.36 -3.76 16 6 N -0.30 -4.08 12.21 29.69 0.36 -3.71 16 7 C 0.15 1.43 13.19 -89.95 -1.19 0.25 16 8 N -0.57 -5.34 6.19 -11.37 -0.07 -5.41 16 9 H 0.43 2.93 8.96 -40.82 -0.37 2.56 16 10 C 0.06 0.73 4.36 -3.82 -0.02 0.72 16 11 C 0.02 0.34 2.26 -93.40 -0.21 0.13 16 12 H 0.10 1.48 6.67 -51.93 -0.35 1.14 16 13 C 0.25 4.85 13.66 -20.76 -0.28 4.57 16 14 N -0.47 -10.14 18.54 42.15 0.78 -9.36 16 15 C -0.01 -0.12 3.49 -27.88 -0.10 -0.22 16 16 C -0.53 -13.58 9.15 -34.44 -0.32 -13.90 16 17 H 0.07 2.06 7.84 -52.49 -0.41 1.65 16 18 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 19 N -0.90 -26.27 13.96 55.43 0.77 -25.49 16 20 Si 0.88 19.93 27.47 -169.99 -4.67 15.26 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.08 0.99 6.15 -51.93 -0.32 0.67 16 26 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.10 0.92 6.57 -51.93 -0.34 0.58 16 28 H 0.08 0.72 8.12 -51.92 -0.42 0.30 16 29 H 0.22 1.06 8.06 -52.49 -0.42 0.63 16 30 H 0.06 0.66 8.00 -51.93 -0.42 0.24 16 31 H 0.09 1.07 7.94 -51.93 -0.41 0.66 16 32 H 0.03 0.62 7.58 -51.93 -0.39 0.23 16 33 H 0.03 0.54 7.19 -51.93 -0.37 0.17 16 34 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 295.58 15.07 4.45 4.45 Total: -1.00 -33.91 295.58 -6.08 -39.98 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -4.23 Total: -1.12 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -2.77 Total: -3.27 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 1.14 Total: -55.30 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.67 Total: 15.26 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.91 -6.08 -39.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175585100.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.735 kcal (2) G-P(sol) polarization free energy of solvation -33.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds