Wall clock time and date at job start Thu Apr 9 2020 12:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99919 * 2 1 4 4 C 1.50694 * 109.47739 * 66.04636 * 3 2 1 5 5 N 1.30527 * 126.34553 * 275.02751 * 4 3 2 6 6 N 1.28591 * 109.67114 * 179.97438 * 5 4 3 7 7 C 1.30515 * 109.67805 * 0.02562 * 6 5 4 8 8 N 1.35485 * 126.35060 * 94.71014 * 4 3 2 9 9 H 0.97006 * 126.97671 * 0.04407 * 8 4 3 10 10 C 1.46898 * 110.99809 * 236.04154 * 2 1 3 11 11 C 1.53003 * 109.46814 * 199.66498 * 10 2 1 12 12 H 1.08992 * 109.47446 * 304.67021 * 11 10 2 13 13 C 1.47201 * 109.47164 * 64.67329 * 11 10 2 14 14 N 3.66014 * 124.18065 * 157.05536 * 2 1 3 15 15 C 1.53008 * 109.46922 * 184.67054 * 11 10 2 16 16 C 1.50697 * 109.46861 * 175.00580 * 15 11 10 17 17 H 1.07996 * 120.00548 * 359.97438 * 16 15 11 18 18 C 1.37883 * 119.99496 * 179.72451 * 16 15 11 19 19 N 1.31518 * 119.99826 * 180.26953 * 18 16 15 20 20 Si 1.86792 * 120.00320 * 0.27125 * 18 16 15 21 21 H 1.48507 * 109.46926 * 89.99928 * 20 18 16 22 22 H 1.48493 * 109.47429 * 209.99828 * 20 18 16 23 23 H 1.48502 * 109.47334 * 330.00096 * 20 18 16 24 24 H 1.09002 * 109.46703 * 188.20583 * 1 2 3 25 25 H 1.08997 * 109.46996 * 308.19863 * 1 2 3 26 26 H 1.08995 * 109.47325 * 68.20152 * 1 2 3 27 27 H 1.09000 * 109.47033 * 186.04719 * 3 2 1 28 28 H 1.09011 * 109.46861 * 306.04159 * 3 2 1 29 29 H 1.07994 * 126.35092 * 179.97438 * 7 6 5 30 30 H 1.09001 * 109.46767 * 79.67202 * 10 2 1 31 31 H 1.08992 * 109.47506 * 319.67073 * 10 2 1 32 32 H 1.09000 * 109.47018 * 54.99981 * 15 11 10 33 33 H 1.09000 * 109.46672 * 295.00296 * 15 11 10 34 34 H 0.96996 * 120.00197 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2983 5 7 0.5167 2.6605 1.5677 6 7 0.5521 3.1190 2.7686 7 6 1.6967 2.8196 3.3198 8 7 2.4155 2.1257 2.4045 9 1 3.3075 1.7616 2.5172 10 6 1.9954 -0.7661 -1.1375 11 6 3.4464 -1.1627 -0.8575 12 1 4.0303 -0.2702 -0.6331 13 6 3.4910 -2.0803 0.2927 14 7 3.5253 -2.7884 1.1804 15 6 4.0314 -1.8588 -2.0881 16 6 5.4940 -2.1396 -1.8584 17 1 5.9599 -1.8503 -0.9281 18 6 6.2363 -2.7707 -2.8341 19 7 7.5115 -3.0206 -2.6316 20 14 5.4307 -3.2707 -4.4435 21 1 5.5485 -2.1599 -5.4221 22 1 6.1071 -4.4782 -4.9816 23 1 3.9959 -3.5714 -4.2065 24 1 -0.3633 -1.0172 0.1467 25 1 -0.3633 0.6355 0.8076 26 1 -0.3634 0.3816 -0.9541 27 1 3.0797 1.3444 -0.1083 28 1 1.5611 1.9273 -0.8311 29 1 2.0108 3.0738 4.3213 30 1 1.9536 -0.1538 -2.0384 31 1 1.3943 -1.6640 -1.2803 32 1 3.9176 -1.2133 -2.9590 33 1 3.5038 -2.7971 -2.2598 34 1 8.0336 -3.4649 -3.3178 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175585100.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:22 Heat of formation + Delta-G solvation = 81.018698 kcal Electronic energy + Delta-G solvation = -17600.510553 eV Core-core repulsion = 14762.066186 eV Total energy + Delta-G solvation = -2838.444367 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.128 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.03059 -39.40066 -37.26960 -35.44417 -34.66548 -33.77427 -32.06541 -29.36972 -28.42207 -25.96901 -23.78681 -23.23006 -23.02297 -21.96800 -19.22808 -18.88841 -18.27497 -17.11540 -16.62947 -16.47299 -15.89828 -15.66916 -15.55738 -14.95763 -14.57453 -14.21906 -13.98420 -13.78469 -13.32762 -13.14003 -13.07617 -12.76145 -12.69777 -12.47451 -12.30372 -12.01660 -11.74885 -11.62565 -11.49164 -11.38992 -11.21587 -10.69756 -10.28869 -9.32946 -8.21899 -6.26936 0.87991 1.45253 1.48894 1.58066 1.85076 1.98843 2.07711 2.15862 2.43799 2.97556 3.15555 3.35296 3.44294 3.93618 4.07890 4.09490 4.33901 4.41725 4.50922 4.61846 4.66533 4.72567 4.80357 4.87968 4.94736 5.07874 5.21826 5.28252 5.47906 5.66868 5.96800 6.00280 6.27173 6.29641 6.81052 6.93868 7.37904 7.74496 8.94811 Molecular weight = 249.13amu Principal moments of inertia in cm(-1) A = 0.033525 B = 0.004892 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.993107 B = 5721.735250 C = 5936.284706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.556 5.556 3 C 0.131 3.869 4 C 0.191 3.809 5 N -0.326 5.326 6 N -0.349 5.349 7 C 0.168 3.832 8 N -0.567 5.567 9 H 0.444 0.556 10 C 0.069 3.931 11 C 0.027 3.973 12 H 0.120 0.880 13 C 0.264 3.736 14 N -0.519 5.519 15 C -0.005 4.005 16 C -0.527 4.527 17 H 0.031 0.969 18 C 0.004 3.996 19 N -0.955 5.955 20 Si 0.945 3.055 21 H -0.257 1.257 22 H -0.300 1.300 23 H -0.236 1.236 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.115 0.885 28 H 0.089 0.911 29 H 0.262 0.738 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.026 0.974 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.846 11.647 3.176 16.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.282 5.282 3 C 0.001 3.999 4 C -0.080 4.080 5 N -0.168 5.168 6 N -0.189 5.189 7 C -0.122 4.122 8 N -0.180 5.180 9 H 0.286 0.714 10 C -0.060 4.060 11 C 0.005 3.995 12 H 0.138 0.862 13 C -0.053 4.053 14 N -0.196 5.196 15 C -0.045 4.045 16 C -0.565 4.565 17 H 0.050 0.950 18 C -0.193 4.193 19 N -0.596 5.596 20 Si 0.768 3.232 21 H -0.181 1.181 22 H -0.227 1.227 23 H -0.159 1.159 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.133 0.867 28 H 0.107 0.893 29 H 0.277 0.723 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.044 0.956 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.056 10.916 4.699 17.655 hybrid contribution 1.895 -0.656 -0.994 2.238 sum -11.161 10.261 3.705 15.607 Atomic orbital electron populations 1.22377 0.85865 1.02110 1.01613 1.61825 1.09289 1.12374 1.44676 1.20643 1.02550 0.87854 0.88836 1.24959 0.89306 1.01131 0.92645 1.74137 1.19301 1.14251 1.09093 1.74140 1.19705 1.22340 1.02672 1.27259 0.89330 0.96392 0.99247 1.44153 1.19379 1.42781 1.11714 0.71353 1.22216 0.92314 0.99111 0.92312 1.19110 0.98194 0.94799 0.87383 0.86217 1.29459 0.89951 0.92658 0.93185 1.81021 1.11898 1.12360 1.14363 1.19616 0.93564 0.97184 0.94088 1.21398 0.94911 1.38207 1.02018 0.95026 1.26001 0.95049 0.95322 1.02897 1.70084 1.09151 1.44074 1.36283 0.85743 0.80281 0.78055 0.79122 1.18136 1.22654 1.15934 0.91647 0.92076 0.93324 0.86675 0.89272 0.72269 0.88739 0.89419 0.91569 0.95571 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.37 127.69 1.20 1.78 16 2 N -0.56 -11.76 4.37 -927.05 -4.06 -15.81 16 3 C 0.13 2.35 5.42 85.56 0.46 2.81 16 4 C 0.19 4.12 7.06 137.98 0.97 5.10 16 5 N -0.33 -8.89 11.00 -50.16 -0.55 -9.45 16 6 N -0.35 -9.17 12.21 -59.99 -0.73 -9.90 16 7 C 0.17 2.88 13.19 180.11 2.38 5.25 16 8 N -0.57 -9.53 6.19 -189.87 -1.18 -10.70 16 9 H 0.44 5.10 8.96 -92.70 -0.83 4.27 16 10 C 0.07 1.44 4.36 86.30 0.38 1.81 16 11 C 0.03 0.79 2.26 -12.60 -0.03 0.76 16 12 H 0.12 3.11 6.67 -2.39 -0.02 3.10 16 13 C 0.26 9.85 13.66 89.44 1.22 11.08 16 14 N -0.52 -22.27 18.54 20.01 0.37 -21.90 16 15 C -0.01 -0.20 3.49 29.85 0.10 -0.10 16 16 C -0.53 -26.76 9.15 25.60 0.23 -26.53 16 17 H 0.03 1.81 7.84 -2.91 -0.02 1.79 16 18 C 0.00 0.21 5.47 84.66 0.46 0.67 16 19 N -0.96 -57.32 13.96 21.45 0.30 -57.02 16 20 Si 0.94 39.74 27.47 68.60 1.88 41.62 16 21 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 22 H -0.30 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.24 -8.83 6.54 99.48 0.65 -8.18 16 24 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.06 1.49 6.15 -2.39 -0.01 1.48 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.12 1.71 6.57 -2.39 -0.02 1.69 16 28 H 0.09 1.39 8.12 -2.38 -0.02 1.37 16 29 H 0.26 1.73 8.06 -2.91 -0.02 1.71 16 30 H 0.09 1.45 8.00 -2.39 -0.02 1.43 16 31 H 0.09 1.85 7.94 -2.39 -0.02 1.83 16 32 H 0.07 2.08 7.58 -2.39 -0.02 2.07 16 33 H 0.03 0.98 7.19 -2.39 -0.02 0.96 16 34 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -76.17 295.58 3.66 -72.51 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 0.24 Total: 8.01 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 7.38 Total: 2.64 kcal Atomic # 7 Polarization: -118.94 SS G_CDS: -5.85 Total: -124.79 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 1.88 Total: 41.62 kcal Total: -76.17 3.66 -72.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175585100.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.533 kcal (2) G-P(sol) polarization free energy of solvation -76.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds