Wall clock time and date at job start Thu Apr 9 2020 12:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47254 * 2 1 4 4 C 1.50702 * 109.47238 * 119.99510 * 2 1 3 5 5 H 1.08008 * 119.99730 * 92.31236 * 4 2 1 6 6 C 1.37872 * 120.00008 * 272.31240 * 4 2 1 7 7 N 1.31517 * 119.99968 * 173.71336 * 6 4 2 8 8 Si 1.86804 * 120.00238 * 353.70794 * 6 4 2 9 9 H 1.48500 * 109.46893 * 273.88144 * 8 6 4 10 10 H 1.48501 * 109.46813 * 33.87911 * 8 6 4 11 11 H 1.48494 * 109.47206 * 153.88016 * 8 6 4 12 12 N 1.46506 * 109.47323 * 239.99476 * 2 1 3 13 13 C 1.46494 * 119.99902 * 300.00366 * 12 2 1 14 14 C 1.34782 * 119.99629 * 119.99747 * 12 2 1 15 15 O 1.21577 * 120.00154 * 0.02562 * 14 12 2 16 16 N 1.34773 * 119.99633 * 180.02562 * 14 12 2 17 17 C 1.39538 * 119.99908 * 184.52396 * 16 14 12 18 18 C 1.39405 * 120.85666 * 324.81079 * 17 16 14 19 19 C 1.37938 * 119.07332 * 179.75543 * 18 17 16 20 20 N 1.31979 * 120.83665 * 0.52761 * 19 18 17 21 21 C 1.31969 * 121.89348 * 359.72785 * 20 19 18 22 22 C 1.37943 * 120.84192 * 0.02562 * 21 20 19 23 23 H 1.08999 * 109.46826 * 55.68162 * 1 2 3 24 24 H 1.09002 * 109.46465 * 175.68052 * 1 2 3 25 25 H 1.09000 * 109.47089 * 295.68250 * 1 2 3 26 26 H 0.96996 * 119.99985 * 179.97438 * 7 6 4 27 27 H 1.08994 * 109.47488 * 90.00276 * 13 12 2 28 28 H 1.09004 * 109.46836 * 209.99870 * 13 12 2 29 29 H 1.08994 * 109.46999 * 329.99396 * 13 12 2 30 30 H 0.97000 * 119.99920 * 4.52026 * 16 14 12 31 31 H 1.08000 * 120.46028 * 359.97438 * 18 17 16 32 32 H 1.07999 * 119.58593 * 180.25577 * 19 18 17 33 33 H 1.08003 * 119.58048 * 179.97438 * 21 20 19 34 34 H 1.07994 * 120.46429 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.2480 -1.7680 1.1933 6 6 2.2168 -0.0100 2.4037 7 7 2.5356 -0.6493 3.5080 8 14 2.0139 1.8469 2.4250 9 1 3.2947 2.4892 2.0347 10 1 0.9506 2.2396 1.4655 11 1 1.6352 2.2879 3.7914 12 7 2.0184 -0.6907 -1.1961 13 6 1.6645 -2.0933 -1.4279 14 6 2.7933 -0.0357 -2.0833 15 8 3.0873 1.1282 -1.8908 16 7 3.2421 -0.6710 -3.1840 17 6 4.1204 -0.0235 -4.0538 18 6 4.0140 1.3465 -4.2885 19 6 4.9049 1.9498 -5.1516 20 7 5.8413 1.2453 -5.7588 21 6 5.9710 -0.0539 -5.5667 22 6 5.1230 -0.7311 -4.7152 23 1 -0.3633 0.5794 -0.8488 24 1 -0.3632 -1.0248 -0.0774 25 1 -0.3633 0.4454 0.9261 26 1 2.6657 -0.1566 4.3333 27 1 0.7377 -2.1445 -1.9992 28 1 2.4630 -2.5820 -1.9862 29 1 1.5296 -2.5968 -0.4707 30 1 2.9547 -1.5782 -3.3714 31 1 3.2469 1.9279 -3.7987 32 1 4.8326 3.0115 -5.3363 33 1 6.7506 -0.5940 -6.0834 34 1 5.2344 -1.7944 -4.5628 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176525917.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:24 Heat of formation + Delta-G solvation = 20.031874 kcal Electronic energy + Delta-G solvation = -18076.227507 eV Core-core repulsion = 15202.845802 eV Total energy + Delta-G solvation = -2873.381705 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.66817 -39.21490 -35.99762 -34.87108 -32.79294 -31.12474 -31.01581 -29.56820 -26.42241 -25.30585 -23.69569 -23.30061 -21.24372 -19.37945 -18.25393 -17.45359 -16.74148 -15.85840 -15.81364 -15.52499 -14.84288 -14.33800 -14.06988 -13.68187 -13.58284 -13.30971 -12.83967 -12.50244 -12.34601 -11.97860 -11.80381 -11.47237 -11.15742 -10.82517 -10.68108 -10.51311 -9.86818 -9.83532 -9.38228 -9.27337 -9.03929 -8.65077 -8.52419 -7.79820 -6.22344 -4.24462 1.22634 1.36291 2.89726 3.28153 3.34824 3.41202 3.52483 3.98097 4.23719 4.33715 4.54618 4.88954 5.08294 5.15139 5.28153 5.40390 5.53740 5.76886 5.79544 5.92673 6.06467 6.20671 6.23706 6.34497 6.49529 6.52060 6.77123 6.84847 6.93978 7.26022 7.41361 7.54340 8.08108 8.19658 8.41445 8.77718 8.93355 9.39611 10.89535 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.030430 B = 0.005983 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.933476 B = 4678.889330 C = 5004.273293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.239 3.761 3 H 0.065 0.935 4 C -0.530 4.530 5 H 0.078 0.922 6 C 0.081 3.919 7 N -0.890 5.890 8 Si 0.873 3.127 9 H -0.271 1.271 10 H -0.261 1.261 11 H -0.286 1.286 12 N -0.596 5.596 13 C 0.080 3.920 14 C 0.698 3.302 15 O -0.579 6.579 16 N -0.690 5.690 17 C 0.221 3.779 18 C -0.175 4.175 19 C 0.112 3.888 20 N -0.508 5.508 21 C 0.113 3.887 22 C -0.210 4.210 23 H 0.026 0.974 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.267 0.733 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.089 0.911 30 H 0.407 0.593 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.211 -1.964 -15.277 15.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.139 3.861 3 H 0.082 0.918 4 C -0.568 4.568 5 H 0.096 0.904 6 C -0.123 4.123 7 N -0.527 5.527 8 Si 0.699 3.301 9 H -0.197 1.197 10 H -0.186 1.186 11 H -0.213 1.213 12 N -0.330 5.330 13 C -0.064 4.064 14 C 0.400 3.600 15 O -0.457 6.457 16 N -0.339 5.339 17 C 0.115 3.885 18 C -0.198 4.198 19 C -0.044 4.044 20 N -0.219 5.219 21 C -0.045 4.045 22 C -0.234 4.234 23 H 0.045 0.955 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.108 0.892 30 H 0.244 0.756 31 H 0.169 0.831 32 H 0.173 0.827 33 H 0.172 0.828 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.938 -0.710 -15.347 15.392 hybrid contribution -0.765 -0.203 0.802 1.126 sum 0.174 -0.913 -14.545 14.575 Atomic orbital electron populations 1.22273 0.98218 1.00375 0.99831 1.19265 0.90608 0.94697 0.81579 0.91760 1.21102 1.45627 0.97463 0.92579 0.90372 1.24901 0.93764 0.98413 0.95255 1.69884 1.46775 1.36185 0.99855 0.86937 0.79852 0.86059 0.77244 1.19689 1.18570 1.21254 1.47582 1.50796 1.11627 1.23022 1.21631 0.98536 0.83095 1.03138 1.15990 0.79630 0.84998 0.79421 1.90867 1.62339 1.15303 1.77153 1.42883 1.48560 1.18699 1.23795 1.17838 0.89036 0.92517 0.89076 1.22374 1.02950 0.94659 0.99825 1.22627 0.90002 0.99986 0.91833 1.67657 1.21671 1.08011 1.24549 1.22467 0.96935 0.90251 0.94800 1.21892 0.96675 1.01779 1.03026 0.95513 0.93264 0.92176 0.92307 0.93541 0.93086 0.89221 0.75583 0.83084 0.82733 0.82800 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.98 37.16 0.33 -2.69 16 2 C 0.24 5.59 2.19 -69.08 -0.15 5.44 16 3 H 0.06 1.66 4.42 -51.93 -0.23 1.43 16 4 C -0.53 -14.18 8.70 -34.44 -0.30 -14.48 16 5 H 0.08 2.21 6.86 -52.48 -0.36 1.85 16 6 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 7 N -0.89 -26.32 13.96 55.43 0.77 -25.54 16 8 Si 0.87 21.67 26.41 -169.99 -4.49 17.18 16 9 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.26 -6.20 6.37 56.52 0.36 -5.84 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 N -0.60 -11.86 2.75 -181.01 -0.50 -12.36 16 13 C 0.08 1.20 9.11 59.84 0.55 1.75 16 14 C 0.70 13.87 8.14 -86.92 -0.71 13.16 16 15 O -0.58 -13.58 13.18 5.30 0.07 -13.51 16 16 N -0.69 -10.47 5.18 -14.07 -0.07 -10.54 16 17 C 0.22 3.29 6.34 -83.48 -0.53 2.77 16 18 C -0.18 -2.72 8.77 -39.26 -0.34 -3.07 16 19 C 0.11 1.54 11.17 -17.60 -0.20 1.35 16 20 N -0.51 -7.10 10.36 -13.34 -0.14 -7.24 16 21 C 0.11 1.35 11.17 -17.60 -0.20 1.16 16 22 C -0.21 -2.56 10.06 -39.26 -0.39 -2.95 16 23 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.91 7.53 -51.93 -0.39 0.52 16 25 H 0.06 1.26 7.24 -51.93 -0.38 0.88 16 26 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.61 6.44 -51.93 -0.33 0.28 16 29 H 0.09 1.49 6.60 -51.93 -0.34 1.15 16 30 H 0.41 4.76 6.62 -40.82 -0.27 4.49 16 31 H 0.15 2.58 6.34 -52.49 -0.33 2.24 16 32 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 34 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 283.34 15.07 4.27 4.27 Total: -1.00 -32.81 283.34 -6.05 -38.86 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -3.93 Total: 4.29 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -2.04 Total: 4.59 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.06 Total: -55.68 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.07 Total: -13.51 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.49 Total: 17.18 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.81 -6.05 -38.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176525917.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.894 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds