Wall clock time and date at job start Thu Apr 9 2020 12:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47254 * 2 1 4 4 C 1.50702 * 109.47238 * 119.99510 * 2 1 3 5 5 H 1.08008 * 119.99730 * 92.31236 * 4 2 1 6 6 C 1.37872 * 120.00008 * 272.31240 * 4 2 1 7 7 N 1.31517 * 119.99968 * 173.71336 * 6 4 2 8 8 Si 1.86804 * 120.00238 * 353.70794 * 6 4 2 9 9 H 1.48500 * 109.46893 * 273.88144 * 8 6 4 10 10 H 1.48501 * 109.46813 * 33.87911 * 8 6 4 11 11 H 1.48494 * 109.47206 * 153.88016 * 8 6 4 12 12 N 1.46506 * 109.47323 * 239.99476 * 2 1 3 13 13 C 1.46494 * 119.99902 * 300.00366 * 12 2 1 14 14 C 1.34782 * 119.99629 * 119.99747 * 12 2 1 15 15 O 1.21577 * 120.00154 * 0.02562 * 14 12 2 16 16 N 1.34773 * 119.99633 * 180.02562 * 14 12 2 17 17 C 1.39538 * 119.99908 * 184.52396 * 16 14 12 18 18 C 1.39405 * 120.85666 * 324.81079 * 17 16 14 19 19 C 1.37938 * 119.07332 * 179.75543 * 18 17 16 20 20 N 1.31979 * 120.83665 * 0.52761 * 19 18 17 21 21 C 1.31969 * 121.89348 * 359.72785 * 20 19 18 22 22 C 1.37943 * 120.84192 * 0.02562 * 21 20 19 23 23 H 1.08999 * 109.46826 * 55.68162 * 1 2 3 24 24 H 1.09002 * 109.46465 * 175.68052 * 1 2 3 25 25 H 1.09000 * 109.47089 * 295.68250 * 1 2 3 26 26 H 0.96996 * 119.99985 * 179.97438 * 7 6 4 27 27 H 1.08994 * 109.47488 * 90.00276 * 13 12 2 28 28 H 1.09004 * 109.46836 * 209.99870 * 13 12 2 29 29 H 1.08994 * 109.46999 * 329.99396 * 13 12 2 30 30 H 0.97000 * 119.99920 * 4.52026 * 16 14 12 31 31 H 1.08000 * 120.46028 * 359.97438 * 18 17 16 32 32 H 1.07999 * 119.58593 * 180.25577 * 19 18 17 33 33 H 1.08003 * 119.58048 * 179.97438 * 21 20 19 34 34 H 1.07994 * 120.46429 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.2480 -1.7680 1.1933 6 6 2.2168 -0.0100 2.4037 7 7 2.5356 -0.6493 3.5080 8 14 2.0139 1.8469 2.4250 9 1 3.2947 2.4892 2.0347 10 1 0.9506 2.2396 1.4655 11 1 1.6352 2.2879 3.7914 12 7 2.0184 -0.6907 -1.1961 13 6 1.6645 -2.0933 -1.4279 14 6 2.7933 -0.0357 -2.0833 15 8 3.0873 1.1282 -1.8908 16 7 3.2421 -0.6710 -3.1840 17 6 4.1204 -0.0235 -4.0538 18 6 4.0140 1.3465 -4.2885 19 6 4.9049 1.9498 -5.1516 20 7 5.8413 1.2453 -5.7588 21 6 5.9710 -0.0539 -5.5667 22 6 5.1230 -0.7311 -4.7152 23 1 -0.3633 0.5794 -0.8488 24 1 -0.3632 -1.0248 -0.0774 25 1 -0.3633 0.4454 0.9261 26 1 2.6657 -0.1566 4.3333 27 1 0.7377 -2.1445 -1.9992 28 1 2.4630 -2.5820 -1.9862 29 1 1.5296 -2.5968 -0.4707 30 1 2.9547 -1.5782 -3.3714 31 1 3.2469 1.9279 -3.7987 32 1 4.8326 3.0115 -5.3363 33 1 6.7506 -0.5940 -6.0834 34 1 5.2344 -1.7944 -4.5628 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176525917.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:24 Heat of formation + Delta-G solvation = -3.097409 kcal Electronic energy + Delta-G solvation = -18077.230468 eV Core-core repulsion = 15202.845802 eV Total energy + Delta-G solvation = -2874.384666 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.95208 -40.46901 -37.55056 -36.29026 -34.72727 -32.60602 -32.12435 -30.94028 -27.77199 -27.26255 -24.92257 -24.39530 -22.73895 -20.90046 -19.65463 -19.07211 -18.37807 -17.24649 -17.10797 -16.77482 -16.20521 -16.10476 -15.25910 -15.06347 -14.78386 -14.53270 -14.48151 -14.15819 -14.05144 -13.38301 -13.10996 -12.98978 -12.87095 -12.64352 -12.32317 -11.96010 -11.80367 -11.36729 -11.24673 -10.78275 -10.43160 -10.07217 -9.82375 -9.29297 -8.37806 -6.41130 0.20141 0.27107 1.26971 1.34289 1.41589 1.55287 2.07019 2.27289 2.85391 2.93540 3.07815 3.63100 3.91944 4.05429 4.25043 4.27890 4.40013 4.52570 4.60055 4.73362 4.77756 4.81255 4.89379 4.96067 5.09996 5.13030 5.29800 5.40028 5.51771 5.72289 5.84215 5.85188 6.28427 6.63411 6.90354 7.06572 7.23869 7.45625 8.77418 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.030430 B = 0.005983 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.933476 B = 4678.889330 C = 5004.273293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.241 3.759 3 H 0.038 0.962 4 C -0.522 4.522 5 H 0.055 0.945 6 C 0.031 3.969 7 N -0.934 5.934 8 Si 0.922 3.078 9 H -0.287 1.287 10 H -0.245 1.245 11 H -0.277 1.277 12 N -0.605 5.605 13 C 0.075 3.925 14 C 0.693 3.307 15 O -0.622 6.622 16 N -0.671 5.671 17 C 0.196 3.804 18 C -0.197 4.197 19 C 0.108 3.892 20 N -0.522 5.522 21 C 0.113 3.887 22 C -0.197 4.197 23 H 0.045 0.955 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.268 0.732 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.424 0.576 31 H 0.128 0.872 32 H 0.173 0.827 33 H 0.193 0.807 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.261 -2.828 -17.484 17.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.138 3.862 3 H 0.056 0.944 4 C -0.561 4.561 5 H 0.073 0.927 6 C -0.169 4.169 7 N -0.573 5.573 8 Si 0.747 3.253 9 H -0.213 1.213 10 H -0.168 1.168 11 H -0.203 1.203 12 N -0.339 5.339 13 C -0.067 4.067 14 C 0.395 3.605 15 O -0.503 6.503 16 N -0.322 5.322 17 C 0.091 3.909 18 C -0.219 4.219 19 C -0.047 4.047 20 N -0.233 5.233 21 C -0.044 4.044 22 C -0.220 4.220 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.265 0.735 31 H 0.146 0.854 32 H 0.190 0.810 33 H 0.209 0.791 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.973 -1.623 -17.609 17.710 hybrid contribution -0.698 -0.027 1.356 1.525 sum 0.275 -1.650 -16.253 16.339 Atomic orbital electron populations 1.22122 0.95698 1.01863 1.00211 1.19015 0.92401 0.93147 0.81656 0.94358 1.21364 1.44218 0.96609 0.93866 0.92650 1.25555 0.94207 1.01925 0.95217 1.69984 1.49178 1.37608 1.00521 0.86147 0.79442 0.81830 0.77885 1.21343 1.16850 1.20258 1.47418 1.50985 1.13366 1.22112 1.21880 1.01362 0.80337 1.03125 1.16132 0.79375 0.84632 0.80353 1.90841 1.63761 1.17355 1.78334 1.42520 1.48133 1.19132 1.22391 1.18140 0.90162 0.92698 0.89873 1.22312 1.03382 0.95316 1.00927 1.22872 0.89561 1.00973 0.91323 1.67739 1.21613 1.09208 1.24766 1.23150 0.97271 0.89737 0.94199 1.22215 0.94971 1.03279 1.01521 0.93619 0.91476 0.93053 0.92261 0.90351 0.89826 0.91105 0.73485 0.85428 0.81017 0.79052 0.81448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.49 8.98 71.98 0.65 -4.85 16 2 C 0.24 11.13 2.19 44.25 0.10 11.23 16 3 H 0.04 1.99 4.42 -2.39 -0.01 1.98 16 4 C -0.52 -28.24 8.70 25.60 0.22 -28.02 16 5 H 0.06 3.19 6.86 -2.91 -0.02 3.17 16 6 C 0.03 1.74 5.47 84.65 0.46 2.20 16 7 N -0.93 -56.37 13.96 21.45 0.30 -56.07 16 8 Si 0.92 45.31 26.41 68.60 1.81 47.12 16 9 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 10 H -0.25 -11.26 6.37 99.48 0.63 -10.63 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 N -0.61 -23.35 2.75 -844.85 -2.33 -25.67 16 13 C 0.08 2.08 9.11 127.77 1.16 3.24 16 14 C 0.69 27.01 8.14 179.05 1.46 28.46 16 15 O -0.62 -29.55 13.18 -3.96 -0.05 -29.60 16 16 N -0.67 -19.03 5.18 -316.68 -1.64 -20.68 16 17 C 0.20 5.50 6.34 38.48 0.24 5.75 16 18 C -0.20 -6.05 8.77 22.48 0.20 -5.85 16 19 C 0.11 2.90 11.17 84.60 0.95 3.84 16 20 N -0.52 -13.46 10.36 -196.11 -2.03 -15.49 16 21 C 0.11 2.33 11.17 84.60 0.95 3.27 16 22 C -0.20 -4.12 10.06 22.48 0.23 -3.90 16 23 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.07 2.35 7.53 -2.39 -0.02 2.33 16 25 H 0.05 2.08 7.24 -2.39 -0.02 2.06 16 26 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 27 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.08 1.73 6.44 -2.38 -0.02 1.71 16 29 H 0.07 2.26 6.60 -2.39 -0.02 2.24 16 30 H 0.42 8.54 6.62 -92.71 -0.61 7.93 16 31 H 0.13 4.52 6.34 -2.91 -0.02 4.50 16 32 H 0.17 3.73 8.06 -2.91 -0.02 3.71 16 33 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -73.03 283.34 3.11 -69.92 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.44 Total: 15.10 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: 6.61 Total: 15.38 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -5.70 Total: -117.91 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.05 Total: -29.60 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.81 Total: 47.12 kcal Total: -73.03 3.11 -69.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176525917.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.822 kcal (2) G-P(sol) polarization free energy of solvation -73.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds